pycom10g17220

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000200
Physical Location & Seq
Forward (+)
20454289 .. 20455608
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g17220.1

Sequence Viewer

Length: 1320 bp
ATGGCCACAAAAATCGAAGTTCAAATAATAGAGAGCCAAACAGTTAAACCATCCTCCCCAACTCCTCATCAACTTAGAAATTTTAAGCTCTCAGTTTTGGACCAGATGGCTCCTCTAGTTCATGTCCCACTACTTCTCTTCTATCCCAATATTGCTACTACTCATTCCATGGCTATGAATGAAAGATGTCAGCTTCTAAGTCAATCATTAGCCAAAGCTCTCACTCACTTCTACCCCCTTGCCGGAAGATTAGTTGAAGGCAGTTCCACGATTGAATGCAACGATGATGGAGCTGAATTCATCATAGCCCGTGTCAACTGTTCCTTAGCGGAGATTTTGGAACCCCCGGATGTCGTGATGCTAAACCAGTTCCTTCCAACCGAAGGAAAAGGCTCAATGCTTCTTGTGCAAGTCAACTTTTTCGAGTGCGGTGGAATGGCAATCGGATTCAAGATTTCACATATGATTGCTGATGGCTCCACAGTATTCACATTCATCAAATATTTGTCCACAATAGCACTTCAGTCCAGCGACAGTGATCAGGTGGTATTGCCTCCAGAATTTGGTGCTGCATCTCATTTTCCACCACTAGATTTTTTGAACTCATCACAGCCGGCACCAATGCCCAAGAAATTTCACCAAGCACAGAAGTGCATAACAGAGAGGTATGTGTTTGATGCGTCAAAAATTTCTACTCTCCAATCTGATGTAGCCAGTTCAATTGTTCCCCATCCTACGCGTGTAGAAGCAGTTTCAGCACTCATTTGGAAATGTGCAATGGAAGCGTCAAGATCAAACTCGCAGTCCCCAAGGCCATCCATGTTCCATCAAGGTGTGAACTTGCGCAAAAGGTTTGTGCCGCCTTTGCCAGAAAACTTAGCTGGGAACATCGTGGGCCGTTTTACATCGAAGGTTGAAGAGTTTGCGATGATAGATCTAAAAGACTTGGCTGCTAAGTTCAGGAAAGGGATTGAACAAGTGAAAGAAAAGTATGCTGCACAAGTAGTATTTGATTCTAATGAAGCATGTCAGGAGCAAAAAGACTTCTACAAAAACGTGCTAGATAATGATGGGATAGAAAATTATGCCTGCGCCAGTTGGTGTAGGTTTCCTTATTACGAAACTGATTTCGGATGGGGAAAGCCGGCATGGGTGAGCTTAACTAGTTTCTCAGTTGCGAATGTATTTACTTTGTTGGACAAAAGAGATTGCAAGGGATTAGAAGCATGGGTGACTATGAGTGAAGAAACCATGGCCATCCTTGAAAGCAATGTGGAACTGCTTGGATATGCTTCTGTAAATCCAAGTGTCACCTACTGA

Protein Analysis

440

Amino Acids

48.77

Weight (kDa)

5.57

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 427 1.2e-85 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 616
AccB7I CCANNNNNTGG 1 cut(s) 563
AccII CGCG 1 cut(s) 739
AciI CCGC 3 cut(s) 329, 429, 860
AcoI YGGCCR 2 cut(s) 3, 1254
AcsI RAATTY 5 cut(s) 79, 296, 560, 632, 687
AcuI CTGAAG 1 cut(s) 506
AfiI CCNNNNNNNGG 3 cut(s) 242, 383, 563
AflIII ACRYGT 1 cut(s) 737
AgsI TTSAA 9 cut(s) 23, 257, 275, 451, 601, 720, 917, 974, 1265
AhlI ACTAGT 1 cut(s) 1163
AleI CACNNNNGTG 1 cut(s) 649
AluBI AGCT 6 cut(s) 88, 193, 218, 293, 881, 1158
AluI AGCT 6 cut(s) 88, 193, 218, 293, 881, 1158
AoxI GGCC 4 cut(s) 3, 812, 895, 1254
ApeKI GCWGC 3 cut(s) 569, 950, 995
ApoI RAATTY 5 cut(s) 79, 296, 560, 632, 687
ArsI GACNNNNNNTTYG 2 cut(s) 788, 820
AspLEI GCGC 2 cut(s) 846, 1094
AspS9I GGNCC 2 cut(s) 100, 895
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 4 cut(s) 629, 1165, 1243, 1303
AvaII GGWCC 1 cut(s) 100
BalI TGGCCA 2 cut(s) 5, 1256
BanI GGYRCC 1 cut(s) 616
BbvI GCAGC 3 cut(s) 556, 937, 982
BceAI ACGGC 1 cut(s) 882
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 1163
BfaI CTAG 4 cut(s) 116, 590, 1061, 1164
BglII AGATCT 1 cut(s) 934
BisI GCNGC 4 cut(s) 570, 860, 951, 996
BlsI GCNGC 4 cut(s) 571, 861, 952, 997
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 100, 895
BmiI GGNNCC 4 cut(s) 111, 342, 478, 618
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 3 cut(s) 348, 581, 667
BpmI CTGGAG 1 cut(s) 540
Bpu10I CCTNAGC 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 168, 345, 809, 1251
Bsc4I CCNNNNNNNGG 3 cut(s) 242, 383, 563
Bse118I RCCGGY 2 cut(s) 613, 1144
Bse1I ACTGG 3 cut(s) 367, 714, 1095
Bse3DI GCAATG 2 cut(s) 783, 1276
BseDI CCNNGG 4 cut(s) 168, 345, 809, 1251
BseGI GGATG 6 cut(s) 50, 355, 730, 815, 1139, 1257
BseLI CCNNNNNNNGG 3 cut(s) 242, 383, 563
BseMI GCAATG 2 cut(s) 783, 1276
BseMII CTCAG 2 cut(s) 105, 1185
BseNI ACTGG 3 cut(s) 367, 714, 1095
BseRI GAGGAG 2 cut(s) 54, 102
BseXI GCAGC 3 cut(s) 556, 937, 982
BseYI CCCAGC 1 cut(s) 881
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 1 cut(s) 739
BshFI GGCC 4 cut(s) 5, 814, 897, 1256
BshNI GGYRCC 1 cut(s) 616
BsiSI CCGG 4 cut(s) 243, 347, 614, 1145
BslFI GGGAC 2 cut(s) 110, 790
BslI CCNNNNNNNGG 3 cut(s) 242, 383, 563
BsmFI GGGAC 2 cut(s) 110, 790
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 4 cut(s) 5, 814, 897, 1256
Bsp143I GATC 3 cut(s) 538, 791, 934
Bsp19I CCATGG 2 cut(s) 168, 1251
BspACI CCGC 3 cut(s) 329, 429, 860
BspANI GGCC 4 cut(s) 5, 814, 897, 1256
BspCNI CTCAG 2 cut(s) 104, 1184
BspFNI CGCG 1 cut(s) 739
BspLI GGNNCC 4 cut(s) 111, 342, 478, 618
BspT107I GGYRCC 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 783, 1276
BsrFI RCCGGY 2 cut(s) 613, 1144
BsrI ACTGG 3 cut(s) 367, 714, 1095
BssAI RCCGGY 2 cut(s) 613, 1144
BssECI CCNNGG 4 cut(s) 168, 345, 809, 1251
BssMI GATC 3 cut(s) 538, 791, 934
BssT1I CCWWGG 3 cut(s) 168, 809, 1251
Bst4CI ACNGT 4 cut(s) 43, 320, 484, 536
Bst6I CTCTTC 2 cut(s) 143, 912
BstC8I GCNNGC 3 cut(s) 615, 1090, 1146
BstDEI CTNAG 7 cut(s) 74, 91, 197, 325, 877, 954, 1171
BstDSI CCRYGG 2 cut(s) 168, 1251
BstF5I GGATG 6 cut(s) 50, 355, 730, 815, 1139, 1257
BstFNI CGCG 1 cut(s) 739
BstHHI GCGC 2 cut(s) 846, 1094
BstKTI GATC 3 cut(s) 541, 794, 937
BstMBI GATC 3 cut(s) 538, 791, 934
BstMWI GCNNNNNNNGC 4 cut(s) 406, 755, 782, 865
BstNSI RCATGY 1 cut(s) 1029
BstSCI CCNGG 1 cut(s) 345
BstUI CGCG 1 cut(s) 739
BstV1I GCAGC 3 cut(s) 556, 937, 982
BstX2I RGATCY 1 cut(s) 934
BstYI RGATCY 1 cut(s) 934
BsuRI GGCC 4 cut(s) 5, 814, 897, 1256
BtgI CCRYGG 2 cut(s) 168, 1251
BtgZI GCGATG 1 cut(s) 941
BtsCI GGATG 6 cut(s) 50, 355, 730, 815, 1139, 1257
BtsIMutI CAGTG 1 cut(s) 541
Cac8I GCNNGC 3 cut(s) 615, 1090, 1146
CfoI GCGC 2 cut(s) 846, 1094
Cfr10I RCCGGY 2 cut(s) 613, 1144
Cfr13I GGNCC 2 cut(s) 100, 895
CseI GACGC 2 cut(s) 669, 774
CviAII CATG 7 cut(s) 122, 169, 820, 1026, 1149, 1227, 1252
DdeI CTNAG 7 cut(s) 74, 91, 197, 325, 877, 954, 1171
DpnI GATC 3 cut(s) 540, 793, 936
DpnII GATC 3 cut(s) 538, 791, 934
EaeI YGGCCR 2 cut(s) 3, 1254
Eam1104I CTCTTC 2 cut(s) 143, 912
EarI CTCTTC 2 cut(s) 143, 912
Eco130I CCWWGG 3 cut(s) 168, 809, 1251
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 296
EcoT14I CCWWGG 3 cut(s) 168, 809, 1251
ErhI CCWWGG 3 cut(s) 168, 809, 1251
FaeI CATG 7 cut(s) 125, 172, 823, 1029, 1152, 1230, 1255
FaqI GGGAC 2 cut(s) 110, 790
FatI CATG 7 cut(s) 121, 168, 819, 1025, 1148, 1226, 1251
FauNDI CATATG 1 cut(s) 462
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 4 cut(s) 570, 860, 951, 996
FokI GGATG 6 cut(s) 37, 362, 717, 802, 1146, 1244
Fsp4HI GCNGC 4 cut(s) 570, 860, 951, 996
FspBI CTAG 4 cut(s) 116, 590, 1061, 1164
FspI TGCGCA 1 cut(s) 845
GlaI GCGC 2 cut(s) 845, 1093
GluI GCNGC 4 cut(s) 570, 860, 951, 996
GsaI CCCAGC 1 cut(s) 885
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 4 cut(s) 5, 814, 897, 1256
HapII CCGG 4 cut(s) 243, 347, 614, 1145
HgaI GACGC 2 cut(s) 669, 774
HhaI GCGC 2 cut(s) 846, 1094
Hin1II CATG 7 cut(s) 125, 172, 823, 1029, 1152, 1230, 1255
Hin6I GCGC 2 cut(s) 844, 1092
HinP1I GCGC 2 cut(s) 844, 1092
HincII GTYRAC 2 cut(s) 316, 415
HindII GTYRAC 2 cut(s) 316, 415
HinfI GANTC 2 cut(s) 447, 1013
HpaII CCGG 4 cut(s) 243, 347, 614, 1145
HphI GGTGA 4 cut(s) 629, 1165, 1243, 1303
Hpy166II GTNNAC 4 cut(s) 316, 415, 510, 838
Hpy188I TCNGA 3 cut(s) 446, 706, 1133
Hpy188III TCNNGA 6 cut(s) 355, 451, 557, 789, 961, 1031
Hpy8I GTNNAC 4 cut(s) 316, 415, 510, 838
HpyAV CCTTC 4 cut(s) 251, 377, 383, 904
HpyCH4III ACNGT 4 cut(s) 43, 320, 484, 536
HpyCH4IV ACGT 1 cut(s) 1056
HpyCH4V TGCA 7 cut(s) 279, 409, 572, 654, 776, 998, 1212
HpyF10VI GCNNNNNNNGC 4 cut(s) 406, 755, 782, 865
HpyF3I CTNAG 7 cut(s) 74, 91, 197, 325, 877, 954, 1171
HpySE526I ACGT 1 cut(s) 1056
Hsp92II CATG 7 cut(s) 125, 172, 823, 1029, 1152, 1230, 1255
HspAI GCGC 2 cut(s) 844, 1092
KroI GCCGGC 2 cut(s) 613, 1144
KroNI GCCGGC 2 cut(s) 615, 1146
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 3 cut(s) 538, 791, 934
LmnI GCTCC 4 cut(s) 115, 290, 482, 1033
Lsp1109I GCAGC 3 cut(s) 556, 937, 982
LweI GCATC 3 cut(s) 348, 581, 667
MaeI CTAG 4 cut(s) 116, 590, 1061, 1164
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 2 cut(s) 1231, 1309
MalI GATC 3 cut(s) 540, 793, 936
MboI GATC 3 cut(s) 538, 791, 934
MboII GAAGA 4 cut(s) 130, 258, 929, 1256
MfeI CAATTG 1 cut(s) 720
MflI RGATCY 1 cut(s) 934
MlsI TGGCCA 2 cut(s) 5, 1256
MluCI AATT 7 cut(s) 79, 296, 560, 632, 687, 720, 1081
MluI ACGCGT 1 cut(s) 737
MluNI TGGCCA 2 cut(s) 5, 1256
MmeI TCCRAC 2 cut(s) 401, 1176
MnlI CCTC 5 cut(s) 64, 75, 123, 564, 657
Mox20I TGGCCA 2 cut(s) 5, 1256
MroNI GCCGGC 2 cut(s) 613, 1144
MscI TGGCCA 2 cut(s) 5, 1256
MseI TTAA 3 cut(s) 45, 84, 1160
MslI CAYNNNNRTG 3 cut(s) 173, 649, 831
Msp20I TGGCCA 2 cut(s) 5, 1256
MspI CCGG 4 cut(s) 243, 347, 614, 1145
MspR9I CCNGG 1 cut(s) 347
MunI CAATTG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 281
MvnI CGCG 1 cut(s) 739
MwoI GCNNNNNNNGC 4 cut(s) 406, 755, 782, 865
NaeI GCCGGC 2 cut(s) 615, 1146
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 2 cut(s) 168, 1251
NdeI CATATG 1 cut(s) 462
NdeII GATC 3 cut(s) 538, 791, 934
NgoMIV GCCGGC 2 cut(s) 613, 1144
NlaIII CATG 7 cut(s) 125, 172, 823, 1029, 1152, 1230, 1255
NlaIV GGNNCC 4 cut(s) 111, 342, 478, 618
NmuCI GTSAC 2 cut(s) 1231, 1309
NsbI TGCGCA 1 cut(s) 845
NspI RCATGY 1 cut(s) 1029
OliI CACNNNNGTG 1 cut(s) 649
PctI GAATGC 1 cut(s) 281
PdiI GCCGGC 2 cut(s) 615, 1146
PfeI GAWTC 2 cut(s) 447, 1013
PflMI CCANNNNNTGG 1 cut(s) 563
PkrI GCNGC 4 cut(s) 571, 861, 952, 997
PspFI CCCAGC 1 cut(s) 881
PspN4I GGNNCC 4 cut(s) 111, 342, 478, 618
PspPI GGNCC 2 cut(s) 100, 895
PsuI RGATCY 1 cut(s) 934
RseI CAYNNNNRTG 3 cut(s) 173, 649, 831
SaqAI TTAA 3 cut(s) 45, 84, 1160
SatI GCNGC 4 cut(s) 570, 860, 951, 996
Sau3AI GATC 3 cut(s) 538, 791, 934
Sau96I GGNCC 2 cut(s) 100, 895
ScrFI CCNGG 1 cut(s) 347
SfaNI GCATC 3 cut(s) 348, 581, 667
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 3 cut(s) 173, 649, 831
SpeI ACTAGT 1 cut(s) 1163
Sse9I AATT 7 cut(s) 79, 296, 560, 632, 687, 720, 1081
SsiI CCGC 3 cut(s) 329, 429, 860
SspI AATATT 2 cut(s) 151, 503
SspMI CTAG 4 cut(s) 116, 590, 1061, 1164
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 3 cut(s) 168, 809, 1251
TaaI ACNGT 4 cut(s) 43, 320, 484, 536
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 3 cut(s) 15, 423, 908
TasI AATT 7 cut(s) 79, 296, 560, 632, 687, 720, 1081
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 2 cut(s) 447, 1013
Tru1I TTAA 3 cut(s) 45, 84, 1160
Tru9I TTAA 3 cut(s) 45, 84, 1160
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 2 cut(s) 1231, 1309
TseI GCWGC 3 cut(s) 569, 950, 995
Tsp45I GTSAC 2 cut(s) 1231, 1309
TspDTI ATGAA 6 cut(s) 110, 191, 195, 289, 484, 1035
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 563
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 5 cut(s) 79, 296, 560, 632, 687
XceI RCATGY 1 cut(s) 1029
XspI CTAG 4 cut(s) 116, 590, 1061, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.