Rmu_ssc0000172.1_g000021

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000172.1
OG0000200
Physical Location & Seq
Reverse (-)
101922 .. 103259
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000172.1_g000021.1.cds

Sequence Viewer

Length: 1338 bp
atggatttagaaatgaaggttgaagtgatcgaaaaggaaacagttacaccatcatcccctactcctcaccaccttaaaactttcaacctttctagctttgatcagtttatgcctgacgtatatgttcggctacttctcttctttcccaacaatagtattattgatcataaggtcaatacagttgatcaccaccactctttaattaccgaaagatccaagcttttgaaaacgtcattatctcaaaccctcagccacttctatcccttcgccggaagaatatttagccacaataatattctttcaatatgttgcaatgaccatggggcagcatttatccaaactcgagtcaactgtcccatatcgaaggttatggaaaagtaccttcctgggacacaaaaccaattacttccaaatgcatcggaatcaacatttgaaagcacaggctatcttctgttagtccaagccaatttctttgaatgtggtggacttgctattggggtaagcatttcacataagatcgcggacggctacacactctatacattcatccgtagctgggcagcaatgagccttggctctgatgtaatagcagttccagctgtggaatttggtgttgtagcttctctttacccaccacaagatatcttcaccaactcatcgaaaacttcctttgaacatgtttacggagattgtgtgacaaggagatttgtgtttgatgcgtcaaagattctatctcttaagtctaaagctgccagtgccacagtgccaaatccaactcgcgttgaagtagtgtctgccctcatctggaaatgtgcaatggaagcatcaagatcaaagtttggttctataaggccatctaagttgtctcaagcggtgaactttaggaaagtaatggggaacacaaatttgatgggaaatcttctgggattcttccaagcaaagacaaaagaaagtgaagcaaatctgcaaagcttggttactatactaaggaaaggcattgaggaatttaaagtgaaatatggtaatgaaattagcagggatgctgctgcacgtgaactttacaaagattttgtgaacctaatgggaaaagatgatacaaaaatctataaatacaccagttggtgcaggtttggcttctatgaagccaattttggatggggaaacccatcatgggtgagcatcccaggtcgacgagtcaagaatctcattctattgcttgatacaaaagatggagatggcatagaagcgtacttgaattttgatgaagacgaaatggctgtaattgaaaccaataaggagctgcttgcatatgcctctctcaatcctattattaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

445

Amino Acids

49.85

Weight (kDa)

7.62

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1116
AccI GTMKAC 1 cut(s) 1189
AccII CGCG 2 cut(s) 521, 780
AciI CCGC 2 cut(s) 521, 872
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 4 cut(s) 605, 904, 1004, 1255
AcvI CACGTG 1 cut(s) 1052
AfaI GTAC 2 cut(s) 380, 1250
AfiI CCNNNNNNNGG 4 cut(s) 269, 556, 804, 1171
AflII CTTAAG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 676
AjnI CCWGG 2 cut(s) 385, 1183
AjuI GAANNNNNNNTTGG 2 cut(s) 1134, 1166
AluBI AGCT 8 cut(s) 96, 220, 555, 599, 620, 749, 972, 1300
AluI AGCT 8 cut(s) 96, 220, 555, 599, 620, 749, 972, 1300
Alw26I GTCTC 1 cut(s) 870
AlwI GGATC 1 cut(s) 207
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 1 cut(s) 851
ApeKI GCWGC 6 cut(s) 326, 560, 749, 1043, 1046, 1300
ApoI RAATTY 4 cut(s) 605, 904, 1004, 1255
AseI ATTAAT 1 cut(s) 1332
AsuHPI GGTGA 5 cut(s) 59, 179, 640, 886, 1186
AvaI CYCGRG 1 cut(s) 342
BbrPI CACGTG 1 cut(s) 1052
BbsI GAAGAC 1 cut(s) 1272
BbvCI CCTCAGC 1 cut(s) 248
BbvI GCAGC 6 cut(s) 338, 572, 736, 1030, 1033, 1287
BccI CCATC 7 cut(s) 58, 862, 904, 1149, 1174, 1223, 1229
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 2 cut(s) 387, 1185
BclI TGATCA 3 cut(s) 100, 163, 184
BcoDI GTCTC 1 cut(s) 870
BfaI CTAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 737
BfuAI ACCTGC 1 cut(s) 1116
BisI GCNGC 6 cut(s) 327, 561, 750, 1044, 1047, 1301
BlsI GCNGC 6 cut(s) 328, 562, 751, 1045, 1048, 1302
Bme1390I CCNGG 2 cut(s) 387, 1185
BmeT110I CYCGRG 1 cut(s) 342
BmrFI CCNGG 2 cut(s) 387, 1185
BmsI GCATC 5 cut(s) 425, 706, 833, 1030, 1188
BpiI GAAGAC 1 cut(s) 1272
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 1 cut(s) 852
BsaAI YACGTR 1 cut(s) 1052
BsaJI CCNNGG 4 cut(s) 319, 386, 571, 1183
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 556, 804, 1171
Bse1I ACTGG 2 cut(s) 753, 1116
Bse3DI GCAATG 3 cut(s) 319, 570, 822
BseBI CCWGG 2 cut(s) 387, 1185
BseDI CCNNGG 4 cut(s) 319, 386, 571, 1183
BseGI GGATG 5 cut(s) 53, 546, 1045, 1160, 1179
BseLI CCNNNNNNNGG 4 cut(s) 269, 556, 804, 1171
BseMI GCAATG 3 cut(s) 319, 570, 822
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 2 cut(s) 753, 1116
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 6 cut(s) 338, 572, 736, 1030, 1033, 1287
BseYI CCCAGC 1 cut(s) 555
BsgI GTGCAG 2 cut(s) 1032, 1144
Bsh1236I CGCG 2 cut(s) 521, 780
BshFI GGCC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 270
BslFI GGGAC 2 cut(s) 339, 403
BslI CCNNNNNNNGG 4 cut(s) 269, 556, 804, 1171
BsmAI GTCTC 1 cut(s) 870
BsmFI GGGAC 2 cut(s) 339, 403
BsnI GGCC 1 cut(s) 853
BsoBI CYCGRG 1 cut(s) 342
Bsp143I GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 2 cut(s) 521, 872
BspANI GGCC 1 cut(s) 853
BspCNI CTCAG 1 cut(s) 261
BspFNI CGCG 2 cut(s) 521, 780
BspMI ACCTGC 1 cut(s) 1116
BspPI GGATC 1 cut(s) 207
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 3 cut(s) 319, 570, 822
BsrI ACTGG 2 cut(s) 753, 1116
BssECI CCNNGG 4 cut(s) 319, 386, 571, 1183
BssMI GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
BssT1I CCWWGG 2 cut(s) 319, 571
Bst2UI CCWGG 2 cut(s) 387, 1185
Bst4CI ACNGT 4 cut(s) 43, 181, 353, 763
Bst6I CTCTTC 1 cut(s) 143
BstAFI CTTAAG 1 cut(s) 737
BstBAI YACGTR 1 cut(s) 1052
BstC8I GCNNGC 1 cut(s) 1305
BstDEI CTNAG 3 cut(s) 248, 858, 986
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 5 cut(s) 53, 546, 1045, 1160, 1179
BstFNI CGCG 2 cut(s) 521, 780
BstKTI GATC 7 cut(s) 30, 103, 166, 187, 215, 519, 833
BstMAI GTCTC 1 cut(s) 870
BstMBI GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
BstMWI GCNNNNNNNGC 4 cut(s) 596, 755, 821, 1131
BstNI CCWGG 2 cut(s) 387, 1185
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 2 cut(s) 385, 1183
BstUI CGCG 2 cut(s) 521, 780
BstV1I GCAGC 6 cut(s) 338, 572, 736, 1030, 1033, 1287
BstV2I GAAGAC 1 cut(s) 1272
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BsuRI GGCC 1 cut(s) 853
BtgI CCRYGG 1 cut(s) 319
BtsCI GGATG 5 cut(s) 53, 546, 1045, 1160, 1179
BtsIMutI CAGTG 2 cut(s) 760, 768
BveI ACCTGC 1 cut(s) 1116
Cac8I GCNNGC 1 cut(s) 1305
CseI GACGC 1 cut(s) 708
Csp6I GTAC 2 cut(s) 379, 1249
CviAII CATG 3 cut(s) 320, 677, 1170
CviQI GTAC 2 cut(s) 379, 1249
DdeI CTNAG 3 cut(s) 248, 858, 986
DpnI GATC 7 cut(s) 29, 102, 165, 186, 214, 518, 832
DpnII GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
DraI TTTAAA 1 cut(s) 1009
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 319, 571
Eco32I GATATC 1 cut(s) 643
Eco72I CACGTG 1 cut(s) 1052
Eco88I CYCGRG 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 385, 1183
EcoRV GATATC 1 cut(s) 643
EcoT14I CCWWGG 2 cut(s) 319, 571
EcoT22I ATGCAT 1 cut(s) 418
ErhI CCWWGG 2 cut(s) 319, 571
FaeI CATG 3 cut(s) 323, 680, 1173
FaqI GGGAC 2 cut(s) 339, 403
FatI CATG 3 cut(s) 319, 676, 1169
FauNDI CATATG 1 cut(s) 1309
FbaI TGATCA 3 cut(s) 100, 163, 184
FblI GTMKAC 1 cut(s) 1189
Fnu4HI GCNGC 6 cut(s) 327, 561, 750, 1044, 1047, 1301
FokI GGATG 5 cut(s) 40, 533, 1052, 1166, 1167
Fsp4HI GCNGC 6 cut(s) 327, 561, 750, 1044, 1047, 1301
FspBI CTAG 1 cut(s) 93
GluI GCNGC 6 cut(s) 327, 561, 750, 1044, 1047, 1301
GsaI CCCAGC 1 cut(s) 559
HaeIII GGCC 1 cut(s) 853
HapII CCGG 1 cut(s) 270
HgaI GACGC 1 cut(s) 708
Hin1II CATG 3 cut(s) 323, 680, 1173
HincII GTYRAC 2 cut(s) 349, 1190
HindII GTYRAC 2 cut(s) 349, 1190
HindIII AAGCTT 2 cut(s) 218, 970
HinfI GANTC 6 cut(s) 345, 422, 727, 927, 1194, 1201
HpaII CCGG 1 cut(s) 270
HphI GGTGA 5 cut(s) 59, 179, 640, 886, 1186
Hpy166II GTNNAC 7 cut(s) 349, 485, 682, 877, 1055, 1075, 1190
Hpy188I TCNGA 2 cut(s) 421, 580
Hpy188III TCNNGA 3 cut(s) 805, 828, 1198
Hpy8I GTNNAC 7 cut(s) 349, 485, 682, 877, 1055, 1075, 1190
Hpy99I CGWCG 1 cut(s) 1194
HpyAV CCTTC 4 cut(s) 10, 274, 358, 392
HpyCH4III ACNGT 4 cut(s) 43, 181, 353, 763
HpyCH4IV ACGT 3 cut(s) 117, 230, 1051
HpyCH4V TGCA 7 cut(s) 312, 416, 815, 967, 1049, 1125, 1307
HpyF10VI GCNNNNNNNGC 4 cut(s) 596, 755, 821, 1131
HpyF3I CTNAG 3 cut(s) 248, 858, 986
HpySE526I ACGT 3 cut(s) 117, 230, 1051
Hsp92II CATG 3 cut(s) 323, 680, 1173
Ksp22I TGATCA 3 cut(s) 100, 163, 184
Kzo9I GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
LmnI GCTCC 1 cut(s) 1297
Lsp1109I GCAGC 6 cut(s) 338, 572, 736, 1030, 1033, 1287
LweI GCATC 5 cut(s) 425, 706, 833, 1030, 1188
MaeI CTAG 1 cut(s) 93
MaeII ACGT 3 cut(s) 117, 230, 1051
MaeIII GTNAC 3 cut(s) 43, 694, 976
MalI GATC 7 cut(s) 29, 102, 165, 186, 214, 518, 832
MboI GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
MboII GAAGA 7 cut(s) 130, 285, 440, 637, 911, 922, 1277
MflI RGATCY 1 cut(s) 212
MlyI GAGTC 2 cut(s) 354, 1203
MmeI TCCRAC 1 cut(s) 797
MnlI CCTC 5 cut(s) 75, 257, 809, 994, 1324
Mph1103I ATGCAT 1 cut(s) 418
MseI TTAA 5 cut(s) 75, 200, 738, 1008, 1332
MspA1I CMGCKG 1 cut(s) 599
MspCI CTTAAG 1 cut(s) 737
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 387, 1185
MvaI CCWGG 2 cut(s) 387, 1185
MvnI CGCG 2 cut(s) 521, 780
MwoI GCNNNNNNNGC 4 cut(s) 596, 755, 821, 1131
NcoI CCATGG 1 cut(s) 319
NdeI CATATG 1 cut(s) 1309
NdeII GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
NlaIII CATG 3 cut(s) 323, 680, 1173
NmuCI GTSAC 1 cut(s) 694
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 342
PciI ACATGT 1 cut(s) 676
PfeI GAWTC 4 cut(s) 422, 727, 927, 1201
PkrI GCNGC 6 cut(s) 328, 562, 751, 1045, 1048, 1302
PleI GAGTC 2 cut(s) 353, 1202
PmaCI CACGTG 1 cut(s) 1052
PmlI CACGTG 1 cut(s) 1052
PpsI GAGTC 2 cut(s) 353, 1202
Ppu21I YACGTR 1 cut(s) 1052
PscI ACATGT 1 cut(s) 676
PshBI ATTAAT 1 cut(s) 1332
Psp6I CCWGG 2 cut(s) 385, 1183
PspCI CACGTG 1 cut(s) 1052
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 2 cut(s) 385, 1183
PspXI VCTCGAGB 1 cut(s) 342
PsrI GAACNNNNNNTAC 2 cut(s) 576, 608
PsuI RGATCY 1 cut(s) 212
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 2 cut(s) 380, 1250
RsaNI GTAC 2 cut(s) 379, 1249
SalI GTCGAC 1 cut(s) 1188
SaqAI TTAA 5 cut(s) 75, 200, 738, 1008, 1332
SatI GCNGC 6 cut(s) 327, 561, 750, 1044, 1047, 1301
Sau3AI GATC 7 cut(s) 27, 100, 163, 184, 212, 516, 830
SchI GAGTC 2 cut(s) 354, 1203
ScrFI CCNGG 2 cut(s) 387, 1185
SfaNI GCATC 5 cut(s) 425, 706, 833, 1030, 1188
Sfr274I CTCGAG 1 cut(s) 342
SlaI CTCGAG 1 cut(s) 342
SmlI CTYRAG 3 cut(s) 342, 737, 867
SmoI CTYRAG 3 cut(s) 342, 737, 867
SsiI CCGC 2 cut(s) 521, 872
SspI AATATT 2 cut(s) 279, 295
SspMI CTAG 1 cut(s) 93
StyD4I CCNGG 2 cut(s) 385, 1183
StyI CCWWGG 2 cut(s) 319, 571
TaaI ACNGT 4 cut(s) 43, 181, 353, 763
TaiI ACGT 3 cut(s) 120, 233, 1054
TaqI TCGA 5 cut(s) 30, 343, 362, 659, 1189
TfiI GAWTC 4 cut(s) 422, 727, 927, 1201
Tru1I TTAA 5 cut(s) 75, 200, 738, 1008, 1332
Tru9I TTAA 5 cut(s) 75, 200, 738, 1008, 1332
TscAI CASTG 2 cut(s) 760, 768
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 6 cut(s) 326, 560, 749, 1043, 1046, 1300
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 5 cut(s) 29, 535, 1041, 1155, 1278
TspGWI ACGGA 2 cut(s) 539, 699
TspRI CASTG 2 cut(s) 760, 768
Vha464I CTTAAG 1 cut(s) 737
VspI ATTAAT 1 cut(s) 1332
XapI RAATTY 4 cut(s) 605, 904, 1004, 1255
XceI RCATGY 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 1189
XspI CTAG 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.