Rh4AG196400

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
48071572 .. 48073434
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG196400.1

Sequence Viewer

Length: 366 bp
ATGTGCAATGGACGCATCAAGATCAAACTTGGGTTTTACAATGCCAGCCATGCTGTTTCTAACAGCAAACATGCGGAAACAAAGGCACAAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAGGCATTGAGAAATTTAAAGTGAAATATGGTAATGGAGTTAGTGGAGATGATATCTACCAACATTTCAAAGAGCATGAAGATTTAATGGGTTTGGCTTCTACGAAGCCAATTTTGGATGGGGAAAGCCATCATGGGTCACTATTCCAGTTTTCTAAATCGGTCATATTTATGGGCTATATAATAGCTTATCATGCTTGTTGCGTAGCTGATGTTTTAGTTGATAGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.34

Weight (kDa)

6.64

Isoelectric Point (pI)

21.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 146
AgsI TTSAA 2 cut(s) 110, 202
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 3 cut(s) 114, 320, 341
AluI AGCT 3 cut(s) 114, 320, 341
ApoI RAATTY 1 cut(s) 146
BccI CCATC 2 cut(s) 245, 270
BmsI GCATC 2 cut(s) 24, 88
Bse1I ACTGG 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 13
BseGI GGATG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 13
BseNI ACTGG 1 cut(s) 280
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 280
BssMI GATC 1 cut(s) 21
Bst6I CTCTTC 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 46
BstF5I GGATG 1 cut(s) 256
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 12, 50, 326
BstNSI RCATGY 1 cut(s) 74
BtsCI GGATG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 46
CseI GACGC 1 cut(s) 21
CviAII CATG 5 cut(s) 50, 71, 209, 266, 326
CviJI RGCY 8 cut(s) 48, 114, 230, 241, 261, 309, 320, 341
CviKI_1 RGCY 8 cut(s) 48, 114, 230, 241, 261, 309, 320, 341
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraI TTTAAA 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco32I GATATC 1 cut(s) 187
EcoRV GATATC 1 cut(s) 187
FaeI CATG 5 cut(s) 53, 74, 212, 269, 329
FatI CATG 5 cut(s) 49, 70, 208, 265, 325
FokI GGATG 1 cut(s) 263
HgaI GACGC 1 cut(s) 21
Hin1II CATG 5 cut(s) 53, 74, 212, 269, 329
HindIII AAGCTT 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 6, 101
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 50, 326
Hsp92II CATG 5 cut(s) 53, 74, 212, 269, 329
Kzo9I GATC 1 cut(s) 21
LpnPI CCDG 2 cut(s) 58, 293
LweI GCATC 2 cut(s) 24, 88
MaeIII GTNAC 1 cut(s) 270
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 2 cut(s) 98, 224
MluCI AATT 2 cut(s) 146, 243
MseI TTAA 2 cut(s) 150, 218
MslI CAYNNNNRTG 1 cut(s) 302
MwoI GCNNNNNNNGC 3 cut(s) 12, 50, 326
NdeII GATC 1 cut(s) 21
NlaIII CATG 5 cut(s) 53, 74, 212, 269, 329
NmuCI GTSAC 1 cut(s) 270
NspI RCATGY 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 150, 218
Sau3AI GATC 1 cut(s) 21
SetI ASST 3 cut(s) 116, 322, 343
SfaNI GCATC 2 cut(s) 24, 88
SmiMI CAYNNNNRTG 1 cut(s) 302
Sse9I AATT 2 cut(s) 146, 243
SsiI CCGC 1 cut(s) 74
TaqII GACCGA 1 cut(s) 283
TasI AATT 2 cut(s) 146, 243
Tru1I TTAA 2 cut(s) 150, 218
Tru9I TTAA 2 cut(s) 150, 218
TseFI GTSAC 1 cut(s) 270
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 1 cut(s) 225
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.