MD10G1200100.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000200
Physical Location & Seq
Reverse (-)
29810087 .. 29810530
444 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1200100.v1.1.491

Sequence Viewer

Length: 444 bp
ATGATGGGTTCAGAGATGAAGGTAGAAGTCATTCACAAGGAAGCAATCAGACCATCCTCTCCAACTCCTCACTACCTCAAAACAACCAACCTCTCTGTTTTTTATCAGCTTATTCCTGATATTTATGTCCCCTTCCTTCTCTTCTATCCCAACAATAATACCAATCACCGATCTTTAGCAGCTGAAAGATCGAAAATCCTTAAGACATCATTATCTGAAATACTCACACACTTCTATCCCTTCGCAGGAAAGTTCCACTATAATGATTCAATCTGTTGCAATGACCATGGTGTTGCATTTGTTGAAGCCCAAGTCAACTGTCCCATATCCAAGATTTTGGACAAAGCAGATATTGGGATGGTAAAACAATTGCTTCCAGCTGATATGGCATCCAGACAAGCAGTCACAGGCTATCTTCTACTAGTCCAGGCCAATTTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

148

Amino Acids

16.61

Weight (kDa)

7.76

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 147 3.4e-27 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 245
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 270, 305
AhdI GACNNNNNGTC 1 cut(s) 401
AhlI ACTAGT 1 cut(s) 421
AjnI CCWGG 1 cut(s) 426
AluBI AGCT 3 cut(s) 109, 182, 380
AluI AGCT 3 cut(s) 109, 182, 380
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 1 cut(s) 179
Asp700I GAANNNNTTC 1 cut(s) 30
AsuHPI GGTGA 1 cut(s) 158
BbvI GCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 61, 352
BciT130I CCWGG 1 cut(s) 428
BcuI ACTAGT 1 cut(s) 421
BfaI CTAG 1 cut(s) 422
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 428
BmeRI GACNNNNNGTC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 398
BsaJI CCNNGG 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 428
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 3 cut(s) 53, 363, 389
BseLI CCNNNNNNNGG 1 cut(s) 245
BseMI GCAATG 1 cut(s) 286
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 191
BshFI GGCC 1 cut(s) 431
BslFI GGGAC 2 cut(s) 113, 306
BslI CCNNNNNNNGG 1 cut(s) 245
BsmFI GGGAC 2 cut(s) 113, 306
BsnI GGCC 1 cut(s) 431
Bsp143I GATC 2 cut(s) 170, 188
Bsp19I CCATGG 1 cut(s) 286
BspANI GGCC 1 cut(s) 431
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 2 cut(s) 170, 188
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 428
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 200
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 53, 363, 389
BstKTI GATC 2 cut(s) 173, 191
BstMBI GATC 2 cut(s) 170, 188
BstMWI GCNNNNNNNGC 1 cut(s) 386
BstNI CCWGG 1 cut(s) 428
BstSCI CCNGG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 191
BstXI CCANNNNNNTGG 1 cut(s) 337
BsuRI GGCC 1 cut(s) 431
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 3 cut(s) 53, 363, 389
CviAII CATG 1 cut(s) 287
CviJI RGCY 6 cut(s) 109, 182, 308, 380, 411, 431
CviKI_1 RGCY 6 cut(s) 109, 182, 308, 380, 411, 431
DpnI GATC 2 cut(s) 172, 190
DpnII GATC 2 cut(s) 170, 188
DriI GACNNNNNGTC 1 cut(s) 401
Eam1104I CTCTTC 1 cut(s) 146
Eam1105I GACNNNNNGTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 1 cut(s) 290
FaiI YATR 5 cut(s) 126, 261, 288, 326, 386
FaqI GGGAC 2 cut(s) 113, 306
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 3 cut(s) 40, 370, 376
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 1 cut(s) 422
GluI GCNGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 431
Hin1II CATG 1 cut(s) 290
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 1 cut(s) 266
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 13, 50, 217
Hpy188III TCNNGA 2 cut(s) 116, 393
Hpy8I GTNNAC 1 cut(s) 316
HpyAV CCTTC 4 cut(s) 13, 142, 146, 250
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 2 cut(s) 279, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 386
Hsp92II CATG 1 cut(s) 290
Kzo9I GATC 2 cut(s) 170, 188
LpnPI CCDG 7 cut(s) 129, 231, 390, 393, 406, 413, 440
Lsp1109I GCAGC 1 cut(s) 191
LweI GCATC 1 cut(s) 398
MaeI CTAG 1 cut(s) 422
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 172, 190
MboI GATC 2 cut(s) 170, 188
MboII GAAGA 3 cut(s) 133, 407, 430
MfeI CAATTG 1 cut(s) 368
MluCI AATT 2 cut(s) 368, 433
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 4 cut(s) 67, 78, 86, 101
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 2 cut(s) 182, 380
MspCI CTTAAG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 428
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 386
NcoI CCATGG 1 cut(s) 286
NdeII GATC 2 cut(s) 170, 188
NlaIII CATG 1 cut(s) 290
NmuCI GTSAC 1 cut(s) 403
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 426
PspGI CCWGG 1 cut(s) 426
PvuII CAGCTG 2 cut(s) 182, 380
RseI CAYNNNNRTG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 170, 188
ScrFI CCNGG 1 cut(s) 428
SetI ASST 6 cut(s) 24, 78, 93, 111, 184, 382
SfaNI GCATC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SpeI ACTAGT 1 cut(s) 421
Sse9I AATT 2 cut(s) 368, 433
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 286
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 191
TasI AATT 2 cut(s) 368, 433
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 403
TspDTI ATGAA 1 cut(s) 32
Vha464I CTTAAG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.