Rh5DG187300

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000200
Physical Location & Seq
Forward (+)
20808434 .. 20808898
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG187300.1

Sequence Viewer

Length: 465 bp
ATGCGGAAAAGATCAGGGCAGCCCTTGACAGAGAACTCACTGGGGAATTTTGTTTGGTACTTTGCATCAATGACAATGGAAATTGAAGTAGATATCCAAAGCTTGGTTGCTAAATTCAGGAAAGGCATTGAGGAATTTAAAGAAAAATATCCTAATGGAGTTAGTCCGCAGGACGTATGTCAAACCATACAGGAATCTGGGAACCTCATGACAAAGGATGGTATAGACAATTATAGTTGCAGCAGCTGGTGCAGATTTCCCTTCTATGAAGCCAATTTTGGATGGGGTAAGCCATCATGGGTGAGTATCCGTACTATGGCAGCAAAGAACACAATTCAATTGACAGATGCGAGGGATGGAAAGGGTATAGAAGTGTCCTTGGCTTTGAAAGAAGAAGATATGGCCATAATTGGTAGTAATGAGGAGCTGCGTGCATATGCATCTCTAAATCCAGCTGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

154

Amino Acids

17.31

Weight (kDa)

5.09

Isoelectric Point (pI)

47.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 142 2.7e-19 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 2 cut(s) 4, 167
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 3 cut(s) 46, 113, 134
AfaI GTAC 2 cut(s) 59, 313
AfiI CCNNNNNNNGG 2 cut(s) 103, 316
AgsI TTSAA 3 cut(s) 86, 338, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 4 cut(s) 102, 246, 427, 455
AluI AGCT 4 cut(s) 102, 246, 427, 455
AlwNI CAGNNNCTG 1 cut(s) 246
AoxI GGCC 1 cut(s) 402
ApeKI GCWGC 6 cut(s) 19, 240, 243, 320, 427, 455
ApoI RAATTY 3 cut(s) 46, 113, 134
AsuHPI GGTGA 1 cut(s) 313
BalI TGGCCA 1 cut(s) 404
BbvI GCAGC 6 cut(s) 31, 252, 255, 332, 414, 442
BccI CCATC 4 cut(s) 212, 276, 301, 350
BciVI GTATCC 1 cut(s) 317
BfuI GTATCC 1 cut(s) 317
BisI GCNGC 6 cut(s) 20, 241, 244, 321, 428, 456
BlsI GCNGC 6 cut(s) 21, 242, 245, 322, 429, 457
BmiI GGNNCC 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 74, 337, 449
BmuI ACTGGG 1 cut(s) 50
BoxI GACNNNNGTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 378
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 316
Bse1I ACTGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 378
BseGI GGATG 3 cut(s) 223, 287, 361
BseLI CCNNNNNNNGG 2 cut(s) 103, 316
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 6 cut(s) 31, 252, 255, 332, 414, 442
BsgI GTGCAG 1 cut(s) 271
BshFI GGCC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 103, 316
BsnI GGCC 1 cut(s) 404
Bsp143I GATC 1 cut(s) 11
BspACI CCGC 2 cut(s) 4, 167
BspANI GGCC 1 cut(s) 404
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 378
BssMI GATC 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 432
BstF5I GGATG 3 cut(s) 223, 287, 361
BstKTI GATC 1 cut(s) 14
BstMBI GATC 1 cut(s) 11
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstPAI GACNNNNGTC 1 cut(s) 177
BstV1I GCAGC 6 cut(s) 31, 252, 255, 332, 414, 442
BsuI GTATCC 1 cut(s) 317
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 3 cut(s) 223, 287, 361
BtsIMutI CAGTG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 246
CciI TCATGA 1 cut(s) 207
Csp6I GTAC 2 cut(s) 58, 312
CviAII CATG 2 cut(s) 208, 297
CviJI RGCY 9 cut(s) 22, 102, 246, 272, 292, 383, 404, 427, 455
CviKI_1 RGCY 9 cut(s) 22, 102, 246, 272, 292, 383, 404, 427, 455
CviQI GTAC 2 cut(s) 58, 312
DpnI GATC 1 cut(s) 13
DpnII GATC 1 cut(s) 11
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 378
Eco32I GATATC 1 cut(s) 94
EcoRV GATATC 1 cut(s) 94
EcoT14I CCWWGG 1 cut(s) 378
EcoT22I ATGCAT 1 cut(s) 442
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 2 cut(s) 211, 300
FatI CATG 2 cut(s) 207, 296
FauNDI CATATG 1 cut(s) 436
Fnu4HI GCNGC 6 cut(s) 20, 241, 244, 321, 428, 456
FokI GGATG 3 cut(s) 230, 294, 368
Fsp4HI GCNGC 6 cut(s) 20, 241, 244, 321, 428, 456
GluI GCNGC 6 cut(s) 20, 241, 244, 321, 428, 456
HaeIII GGCC 1 cut(s) 404
Hin1II CATG 2 cut(s) 211, 300
HindIII AAGCTT 1 cut(s) 100
HinfI GANTC 1 cut(s) 194
HphI GGTGA 1 cut(s) 313
Hpy188III TCNNGA 2 cut(s) 118, 208
HpyAV CCTTC 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 5 cut(s) 65, 240, 252, 434, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 2 cut(s) 211, 300
Kzo9I GATC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 424
LpnPI CCDG 6 cut(s) 26, 103, 155, 176, 183, 232
Lsp1109I GCAGC 6 cut(s) 31, 252, 255, 332, 414, 442
LweI GCATC 3 cut(s) 74, 337, 449
MaeII ACGT 1 cut(s) 174
MalI GATC 1 cut(s) 13
MboI GATC 1 cut(s) 11
MboII GAAGA 2 cut(s) 404, 407
MfeI CAATTG 1 cut(s) 338
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 9 cut(s) 46, 81, 113, 134, 229, 274, 333, 338, 408
MluNI TGGCCA 1 cut(s) 404
MnlI CCTC 4 cut(s) 124, 215, 345, 415
Mox20I TGGCCA 1 cut(s) 404
Mph1103I ATGCAT 1 cut(s) 442
MscI TGGCCA 1 cut(s) 404
MseI TTAA 1 cut(s) 138
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 2 cut(s) 246, 455
MunI CAATTG 1 cut(s) 338
MwoI GCNNNNNNNGC 1 cut(s) 249
NdeI CATATG 1 cut(s) 436
NdeII GATC 1 cut(s) 11
NlaIII CATG 2 cut(s) 211, 300
NlaIV GGNNCC 1 cut(s) 203
NsiI ATGCAT 1 cut(s) 442
PagI TCATGA 1 cut(s) 207
PfeI GAWTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 6 cut(s) 21, 242, 245, 322, 429, 457
PshAI GACNNNNGTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 203
PstNI CAGNNNCTG 1 cut(s) 246
PvuII CAGCTG 2 cut(s) 246, 455
RsaI GTAC 2 cut(s) 59, 313
RsaNI GTAC 2 cut(s) 58, 312
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 6 cut(s) 20, 241, 244, 321, 428, 456
Sau3AI GATC 1 cut(s) 11
SetI ASST 6 cut(s) 104, 177, 207, 248, 429, 457
SfaNI GCATC 3 cut(s) 74, 337, 449
Sse9I AATT 9 cut(s) 46, 81, 113, 134, 229, 274, 333, 338, 408
SsiI CCGC 2 cut(s) 4, 167
StyI CCWWGG 1 cut(s) 378
TaiI ACGT 1 cut(s) 177
TasI AATT 9 cut(s) 46, 81, 113, 134, 229, 274, 333, 338, 408
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 1 cut(s) 45
TseI GCWGC 6 cut(s) 19, 240, 243, 320, 427, 455
TspDTI ATGAA 1 cut(s) 282
TspGWI ACGGA 1 cut(s) 299
TspRI CASTG 1 cut(s) 45
Van91I CCANNNNNTGG 1 cut(s) 103
XapI RAATTY 3 cut(s) 46, 113, 134
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.