FvH4_3g35170

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000200
Physical Location & Seq
Reverse (-)
30342974 .. 30343855
882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35170.t1

Sequence Viewer

Length: 882 bp
ATGGCAATTGTAGTCAACATTTTACATAAGGTCGCGGATGCTTTTACCTTGAGCACATTCTTAAAAAGCTGGGCAGCAGCTTCCCTTGGCTCTAGTAGTAGCTGTACTACTCATGATCATCCAGTGCTTCCTCCAAAGTTCGGTTCTGCAGCTTCTCTTTACCCATCACAAGATTTCTTAAACTCACGAAAACCTGATTTTGTGGGATCTGTTCAAGAAAAGTGCACAAGAAGAAGATTCGTATTTGATGCCTCAAGGATTGTGGCTCTCAAGTCCAAATGTGCTAGTCCTGCCGTGCCACATCCTACGCGTGTTGAAGTAGTGTCAGCACTCATCTGGAAATGTGCCATGGACGCATCGAGATCAAACTTGGGTGTTATAAGGCCTTCCTCGTGGTCTCAAGCGGTGAACATGCGAAAAAGAAGATCAGGTCACGCATTCACAGAAAACTTGATGGGGAATTTTGTGTGGTCGTACACTGCAGCAATGACAGTAAATACTGAAGTAGATCTTCAAAGCTTGGTTGCAACATTCCGGAAATGCAAGGAGGACTATGAAGTAAACTTTCCTAATGGGGTTACCGCTGAGCTTGCCTATCAAAAAATCAAAGAGTCTTGGAAGAACTTGGCAAAGGAGGGCATAGACAACTATGGTTGCACCAGTTGGTGCTGGTTTCCTTTCTACGAAACCAACTTTGGATGGGGAAAGCCATCATGGGTAAGTACCCGTGGTTTTCAAGTCAAAAATACAGTGGTATTGATGGATGCGAAAGATGGCGATGGCATCGAAGCGTCCTTGACTTTCATAGAAGAGAAAATGGCCATATTTGAAAGCAATCAGGAGCTGCTTGCTTATGCATCTCTGAATCCAAGTGTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

294

Amino Acids

32.6

Weight (kDa)

8.77

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 282 5e-42 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AccII CGCG 2 cut(s) 35, 310
AccIII TCCGGA 1 cut(s) 534
AciI CCGC 3 cut(s) 35, 404, 582
AclWI GGATC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 1 cut(s) 460
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 3 cut(s) 106, 476, 724
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 5 cut(s) 215, 317, 515, 737, 830
AjuI GAANNNNNNNTTGG 4 cut(s) 127, 159, 678, 710
AluBI AGCT 7 cut(s) 69, 80, 102, 152, 519, 589, 844
AluI AGCT 7 cut(s) 69, 80, 102, 152, 519, 589, 844
Alw21I GWGCWC 2 cut(s) 56, 227
Alw26I GTCTC 1 cut(s) 402
Alw44I GTGCAC 1 cut(s) 223
AlwI GGATC 1 cut(s) 214
AlwNI CAGNNNCTG 1 cut(s) 844
Aor13HI TCCGGA 1 cut(s) 534
AoxI GGCC 2 cut(s) 383, 819
ApaLI GTGCAC 1 cut(s) 223
ApeKI GCWGC 5 cut(s) 74, 77, 149, 482, 844
ApoI RAATTY 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 227
BalI TGGCCA 1 cut(s) 821
BauI CACGAG 1 cut(s) 391
Bbv12I GWGCWC 2 cut(s) 56, 227
BbvI GCAGC 5 cut(s) 86, 89, 161, 494, 831
BccI CCATC 7 cut(s) 172, 448, 693, 718, 754, 767, 773
BceAI ACGGC 1 cut(s) 278
BclI TGATCA 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 2 cut(s) 93, 285
BfmI CTRYAG 2 cut(s) 147, 480
BglII AGATCT 1 cut(s) 508
BisI GCNGC 5 cut(s) 75, 78, 150, 483, 845
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 5 cut(s) 76, 79, 151, 484, 846
BmsI GCATC 6 cut(s) 28, 238, 365, 754, 792, 866
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 4 cut(s) 70, 238, 254, 384
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 3 cut(s) 85, 348, 727
BsaWI WCCGGW 1 cut(s) 534
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 122, 660
Bse3DI GCAATG 1 cut(s) 492
BseAI TCCGGA 1 cut(s) 534
BseDI CCNNGG 3 cut(s) 85, 348, 727
BseGI GGATG 5 cut(s) 43, 118, 301, 704, 769
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 492
BseMII CTCAG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 122, 660
BseSI GKGCMC 1 cut(s) 227
BseXI GCAGC 5 cut(s) 86, 89, 161, 494, 831
BseYI CCCAGC 1 cut(s) 69
Bsh1236I CGCG 2 cut(s) 35, 310
BshFI GGCC 2 cut(s) 385, 821
BsiHKAI GWGCWC 2 cut(s) 56, 227
BsiSI CCGG 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 1 cut(s) 402
BsmI GAATGC 1 cut(s) 437
BsnI GGCC 2 cut(s) 385, 821
Bso31I GGTCTC 1 cut(s) 402
Bsp1286I GDGCHC 2 cut(s) 56, 227
Bsp13I TCCGGA 1 cut(s) 534
Bsp143I GATC 5 cut(s) 115, 206, 362, 425, 508
Bsp1720I GCTNAGC 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 3 cut(s) 35, 404, 582
BspANI GGCC 2 cut(s) 385, 821
BspCNI CTCAG 1 cut(s) 577
BspEI TCCGGA 1 cut(s) 534
BspFNI CGCG 2 cut(s) 35, 310
BspHI TCATGA 1 cut(s) 112
BspMAI CTGCAG 2 cut(s) 151, 484
BspPI GGATC 1 cut(s) 214
BspTNI GGTCTC 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 492
BsrI ACTGG 2 cut(s) 122, 660
BssECI CCNNGG 3 cut(s) 85, 348, 727
BssMI GATC 5 cut(s) 115, 206, 362, 425, 508
BssSI CACGAG 1 cut(s) 391
BssT1I CCWWGG 2 cut(s) 85, 348
Bst2BI CACGAG 1 cut(s) 391
Bst4CI ACNGT 2 cut(s) 493, 751
Bst6I CTCTTC 1 cut(s) 804
BstC8I GCNNGC 2 cut(s) 591, 849
BstDEI CTNAG 1 cut(s) 585
BstDSI CCRYGG 2 cut(s) 348, 727
BstEII GGTNACC 1 cut(s) 577
BstF5I GGATG 5 cut(s) 43, 118, 301, 704, 769
BstFNI CGCG 2 cut(s) 35, 310
BstKTI GATC 5 cut(s) 118, 209, 365, 428, 511
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 5 cut(s) 115, 206, 362, 425, 508
BstMWI GCNNNNNNNGC 3 cut(s) 290, 353, 590
BstNSI RCATGY 1 cut(s) 415
BstPI GGTNACC 1 cut(s) 577
BstSFI CTRYAG 2 cut(s) 147, 480
BstSLI GKGCMC 1 cut(s) 227
BstUI CGCG 2 cut(s) 35, 310
BstV1I GCAGC 5 cut(s) 86, 89, 161, 494, 831
BstX2I RGATCY 2 cut(s) 206, 508
BstYI RGATCY 2 cut(s) 206, 508
BsuRI GGCC 2 cut(s) 385, 821
BtgI CCRYGG 2 cut(s) 348, 727
BtgZI GCGATG 1 cut(s) 792
BtsCI GGATG 5 cut(s) 43, 118, 301, 704, 769
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 3 cut(s) 129, 477, 756
Cac8I GCNNGC 2 cut(s) 591, 849
CaiI CAGNNNCTG 1 cut(s) 844
CciI TCATGA 1 cut(s) 112
CseI GACGC 2 cut(s) 362, 780
Csp6I GTAC 3 cut(s) 105, 475, 723
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviAII CATG 4 cut(s) 113, 349, 412, 714
CviQI GTAC 3 cut(s) 105, 475, 723
DdeI CTNAG 1 cut(s) 585
DpnI GATC 5 cut(s) 117, 208, 364, 427, 510
DpnII GATC 5 cut(s) 115, 206, 362, 425, 508
EaeI YGGCCR 1 cut(s) 819
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
Eco130I CCWWGG 2 cut(s) 85, 348
Eco147I AGGCCT 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 522
Eco91I GGTNACC 1 cut(s) 577
EcoO65I GGTNACC 1 cut(s) 577
EcoT14I CCWWGG 2 cut(s) 85, 348
EcoT22I ATGCAT 1 cut(s) 859
ErhI CCWWGG 2 cut(s) 85, 348
FaeI CATG 4 cut(s) 116, 352, 415, 717
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 4 cut(s) 112, 348, 411, 713
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 5 cut(s) 75, 78, 150, 483, 845
FokI GGATG 5 cut(s) 50, 105, 288, 711, 776
Fsp4HI GCNGC 5 cut(s) 75, 78, 150, 483, 845
FspBI CTAG 2 cut(s) 93, 285
GluI GCNGC 5 cut(s) 75, 78, 150, 483, 845
GsaI CCCAGC 1 cut(s) 73
HaeIII GGCC 2 cut(s) 385, 821
HapII CCGG 1 cut(s) 535
HgaI GACGC 2 cut(s) 362, 780
Hin1II CATG 4 cut(s) 116, 352, 415, 717
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 3 cut(s) 237, 611, 865
HpaII CCGG 1 cut(s) 535
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 5 cut(s) 16, 225, 409, 477, 562
Hpy188I TCNGA 1 cut(s) 864
Hpy188III TCNNGA 7 cut(s) 113, 186, 215, 337, 360, 535, 839
Hpy8I GTNNAC 5 cut(s) 16, 225, 409, 477, 562
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 493, 751
HpyCH4V TGCA 7 cut(s) 149, 225, 482, 527, 543, 657, 857
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 353, 590
HpyF3I CTNAG 1 cut(s) 585
Hsp92II CATG 4 cut(s) 116, 352, 415, 717
Kpn2I TCCGGA 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 5 cut(s) 115, 206, 362, 425, 508
LmnI GCTCC 1 cut(s) 841
Lsp1109I GCAGC 5 cut(s) 86, 89, 161, 494, 831
LweI GCATC 6 cut(s) 28, 238, 365, 754, 792, 866
MaeI CTAG 2 cut(s) 93, 285
MaeIII GTNAC 2 cut(s) 431, 577
MalI GATC 5 cut(s) 117, 208, 364, 427, 510
MboI GATC 5 cut(s) 115, 206, 362, 425, 508
MboII GAAGA 6 cut(s) 243, 246, 435, 503, 631, 821
MfeI CAATTG 1 cut(s) 6
MflI RGATCY 2 cut(s) 206, 508
MhlI GDGCHC 2 cut(s) 56, 227
MlsI TGGCCA 1 cut(s) 821
MluCI AATT 2 cut(s) 6, 460
MluI ACGCGT 1 cut(s) 308
MluNI TGGCCA 1 cut(s) 821
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 5 cut(s) 141, 262, 400, 541, 628
Mox20I TGGCCA 1 cut(s) 821
Mph1103I ATGCAT 1 cut(s) 859
MroI TCCGGA 1 cut(s) 534
MscI TGGCCA 1 cut(s) 821
MseI TTAA 2 cut(s) 62, 179
Msp20I TGGCCA 1 cut(s) 821
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 1 cut(s) 535
MunI CAATTG 1 cut(s) 6
Mva1269I GAATGC 1 cut(s) 437
MvnI CGCG 2 cut(s) 35, 310
MwoI GCNNNNNNNGC 3 cut(s) 290, 353, 590
NcoI CCATGG 1 cut(s) 348
NdeII GATC 5 cut(s) 115, 206, 362, 425, 508
NlaIII CATG 4 cut(s) 116, 352, 415, 717
NmuCI GTSAC 1 cut(s) 431
NsiI ATGCAT 1 cut(s) 859
NspI RCATGY 1 cut(s) 415
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 385
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 237, 865
PkrI GCNGC 5 cut(s) 76, 79, 151, 484, 846
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PsiI TTATAA 1 cut(s) 380
PspEI GGTNACC 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 69
PstI CTGCAG 2 cut(s) 151, 484
PstNI CAGNNNCTG 1 cut(s) 844
PsuI RGATCY 2 cut(s) 206, 508
RsaI GTAC 3 cut(s) 106, 476, 724
RsaNI GTAC 3 cut(s) 105, 475, 723
SaqAI TTAA 2 cut(s) 62, 179
SatI GCNGC 5 cut(s) 75, 78, 150, 483, 845
Sau3AI GATC 5 cut(s) 115, 206, 362, 425, 508
SchI GAGTC 1 cut(s) 620
SduI GDGCHC 2 cut(s) 56, 227
SfaNI GCATC 6 cut(s) 28, 238, 365, 754, 792, 866
SfcI CTRYAG 2 cut(s) 147, 480
SmlI CTYRAG 4 cut(s) 49, 253, 269, 399
SmoI CTYRAG 4 cut(s) 49, 253, 269, 399
Sse9I AATT 2 cut(s) 6, 460
SseBI AGGCCT 1 cut(s) 385
SsiI CCGC 3 cut(s) 35, 404, 582
SspMI CTAG 2 cut(s) 93, 285
StuI AGGCCT 1 cut(s) 385
StyI CCWWGG 2 cut(s) 85, 348
TaaI ACNGT 2 cut(s) 493, 751
TaqI TCGA 2 cut(s) 359, 786
TasI AATT 2 cut(s) 6, 460
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 2 cut(s) 237, 865
Tru1I TTAA 2 cut(s) 62, 179
Tru9I TTAA 2 cut(s) 62, 179
TscAI CASTG 3 cut(s) 129, 484, 756
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 5 cut(s) 74, 77, 149, 482, 844
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 2 cut(s) 570, 793
TspRI CASTG 3 cut(s) 129, 484, 756
VneI GTGCAC 1 cut(s) 223
XapI RAATTY 1 cut(s) 460
XceI RCATGY 1 cut(s) 415
XspI CTAG 2 cut(s) 93, 285
Zsp2I ATGCAT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.