AT1G24420

Transferase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
8656021 .. 8657997
1977 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G24420.2

Sequence Viewer

Length: 1311 bp
ATGGAGAAGAACGTTGAGATCTTATCAAGAGAAATAGTCAAACCGTCTTCTCCAACTCCAGATGATAAGAGAATTCTCAATCTCTCTCTTCTTGATATCCTCAGCTCACCAATGTACACAGGAGCTCTTCTCTTTTACGCAGCTGATCCTCAGAACCTTCTAGGTTTTTCAACAGAGGAGACTTCCTTGAAGCTCAAGAAATCTCTGTCTAAAACCTTACCAATCTTCTACCCTCTTGCCGGAAGAATCATAGGAAGTTTCGTCGAATGTAATGATGAAGGAGCTGTGTTTATAGAAGCTCGAGTTGACCATCTTCTCTCGGAGTTTCTCAAGTGCCCTGTTCCTGAATCATTGGAATTACTCATTCCTGTTGAAGCTAAGTCAAGAGAAGCTGTTACATGGCCTGTGTTGTTAATCCAAGCTAATTTCTTCAGCTGTGGAGGATTGGTTATCACAATCTGCGTTTCTCATAAGATCACTGATGCTACCTCTTTAGCAATGTTCATCAGAGGATGGGCTGAGTCCTCAAGAGGTTTGGGGATTACTTTGATTCCTAGTTTCACCGCTTCTGAAGTCTTTCCTAAACCACTTGATGAGCTTCCTTCAAAACCGATGGATCGCAAAGAAGAGGTTGAAGAGATGAGTTGTGTGACAAAGAGGTTTGTGTTTGATGCTTCGAAGATCAAGAAACTTAGAGCCAAAGCTTCAAGAAACCTTGTGAAGAATCCAACACGTGTTGAAGCCGTCACAGCTCTGTTTTGGAGATGCGTTACTAAGGTTTCAAGATTGAGTTCTCTAACACCAAGAACTTCAGTGCTGCAGATACTAGTGAACCTAAGAGGAAAGGTAGATTCTTTGTGTGAAAACACAATTGGGAATATGCTTTCCCTCATGATTCTCAAGAACGAAGAAGCTGCGATTGAAAGAATTCAAGATGTGGTTGATGAGATAAGGAGGGCAAAGGAAATATTCAGCTTGAACTGCAAGGAGATGTCGAAATCTTCGTCTAGAATTTTTGAGCTTTTGGAAGAGATTGGGAAAGTATATGGAAGAGGAAATGAGATGGATTTGTGGATGAGTAATAGCTGGTGTAAGCTCGGCTTGTACGATGCTGATTTCGGATGGGGAAAGCCGGTTTGGGTGACCGGAAGAGGCACTTCCCATTTCAAGAACTTGATGTTATTGATTGATACCAAAGATGGAGAAGGAATTGAAGCTTGGATCACTCTTACGGAAGAACAAATGTCACTGTTTGAATGTGATCAAGAGCTTCTTGAATCAGCTTCCCTAAATCCCCCTGTTTTAATCTAG

Protein Analysis

436

Amino Acids

48.82

Weight (kDa)

5.51

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 424 6.1e-103 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 564
AclI AACGTT 1 cut(s) 12
AclWI GGATC 3 cut(s) 140, 624, 1229
AcsI RAATTY 3 cut(s) 72, 927, 1011
AcuI CTGAAG 3 cut(s) 415, 591, 795
AcvI CACGTG 1 cut(s) 734
AfaI GTAC 2 cut(s) 116, 1106
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 2 cut(s) 731, 733
AhlI ACTAGT 1 cut(s) 826
AjuI GAANNNNNNNTTGG 6 cut(s) 855, 887, 1120, 1152, 1201, 1233
Alw21I GWGCWC 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 3 cut(s) 140, 624, 1229
Ama87I CYCGRG 1 cut(s) 300
AoxI GGCC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 140, 817, 914
ApoI RAATTY 3 cut(s) 72, 927, 1011
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
Asp700I GAANNNNTTC 2 cut(s) 576, 927
AsuHPI GGTGA 3 cut(s) 99, 553, 1153
AsuII TTCGAA 1 cut(s) 677
AvaI CYCGRG 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 127
BbrPI CACGTG 1 cut(s) 734
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 127
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 3 cut(s) 152, 804, 901
BccI CCATC 6 cut(s) 318, 507, 607, 1057, 1116, 1193
BceAI ACGGC 1 cut(s) 728
BcgI CGANNNNNNTGC 2 cut(s) 896, 930
BclI TGATCA 1 cut(s) 1261
BcoDI GTCTC 1 cut(s) 173
BcuI ACTAGT 1 cut(s) 826
BfaI CTAG 5 cut(s) 161, 555, 827, 1008, 1309
BfmI CTRYAG 1 cut(s) 818
BglII AGATCT 1 cut(s) 18
BisI GCNGC 3 cut(s) 141, 818, 915
BlsI GCNGC 3 cut(s) 142, 819, 916
BmeT110I CYCGRG 1 cut(s) 300
BmsI GCATC 4 cut(s) 472, 661, 755, 1099
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 114, 146
BpmI CTGGAG 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 677
BpuEI CTTGAG 4 cut(s) 179, 314, 511, 884
BsaAI YACGTR 1 cut(s) 734
BsaWI WCCGGW 1 cut(s) 1145
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 1132
Bse3DI GCAATG 1 cut(s) 504
BseGI GGATG 3 cut(s) 518, 1080, 1127
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 3 cut(s) 115, 164, 510
BseRI GAGGAG 1 cut(s) 191
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 3 cut(s) 152, 804, 901
BshFI GGCC 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 300
BsiSI CCGG 3 cut(s) 240, 1133, 1146
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 173
BsnI GGCC 1 cut(s) 403
BsoBI CYCGRG 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 677
Bsp1286I GDGCHC 2 cut(s) 127, 338
Bsp1407I TGTACA 1 cut(s) 114
Bsp143I GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
BspACI CCGC 1 cut(s) 564
BspANI GGCC 1 cut(s) 403
BspCNI CTCAG 3 cut(s) 114, 163, 511
BspHI TCATGA 1 cut(s) 891
BspMAI CTGCAG 1 cut(s) 822
BspPI GGATC 3 cut(s) 140, 624, 1229
BspQI GCTCTTC 1 cut(s) 132
BspT104I TTCGAA 1 cut(s) 677
BsrDI GCAATG 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 1132
BsrGI TGTACA 1 cut(s) 114
BssAI RCCGGY 1 cut(s) 1132
BssMI GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
Bst4CI ACNGT 2 cut(s) 45, 1251
Bst6I CTCTTC 7 cut(s) 93, 132, 621, 630, 1023, 1045, 1144
BstAUI TGTACA 1 cut(s) 114
BstBAI YACGTR 1 cut(s) 734
BstBI TTCGAA 1 cut(s) 677
BstDEI CTNAG 7 cut(s) 101, 150, 378, 519, 692, 774, 836
BstEII GGTNACC 1 cut(s) 1141
BstF5I GGATG 3 cut(s) 518, 1080, 1127
BstKTI GATC 7 cut(s) 21, 148, 477, 619, 684, 1224, 1264
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
BstMWI GCNNNNNNNGC 2 cut(s) 749, 981
BstPI GGTNACC 1 cut(s) 1141
BstSFI CTRYAG 1 cut(s) 818
BstSLI GKGCMC 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 152, 804, 901
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 18
BstYI RGATCY 1 cut(s) 18
BsuRI GGCC 1 cut(s) 403
BtsCI GGATG 3 cut(s) 518, 1080, 1127
BtsIMutI CAGTG 3 cut(s) 477, 819, 1247
CciI TCATGA 1 cut(s) 891
Cfr10I RCCGGY 1 cut(s) 1132
Csp6I GTAC 2 cut(s) 115, 1105
CviAII CATG 2 cut(s) 399, 892
CviQI GTAC 2 cut(s) 115, 1105
DdeI CTNAG 7 cut(s) 101, 150, 378, 519, 692, 774, 836
DpnI GATC 7 cut(s) 20, 147, 476, 618, 683, 1223, 1263
DpnII GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
Eam1104I CTCTTC 7 cut(s) 93, 132, 621, 630, 1023, 1045, 1144
EarI CTCTTC 7 cut(s) 93, 132, 621, 630, 1023, 1045, 1144
Ecl136II GAGCTC 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 127
Eco32I GATATC 1 cut(s) 97
Eco53kI GAGCTC 1 cut(s) 125
Eco57I CTGAAG 3 cut(s) 415, 591, 795
Eco72I CACGTG 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 300
Eco91I GGTNACC 1 cut(s) 1141
EcoICRI GAGCTC 1 cut(s) 125
EcoO65I GGTNACC 1 cut(s) 1141
EcoRI GAATTC 2 cut(s) 72, 927
EcoRV GATATC 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 127
FaeI CATG 2 cut(s) 402, 895
FaiI YATR 8 cut(s) 251, 293, 400, 471, 881, 893, 1045, 1047
FalI AAGNNNNNCTT 6 cut(s) 1085, 1117, 1141, 1173, 1257, 1289
FatI CATG 2 cut(s) 398, 891
FbaI TGATCA 1 cut(s) 1261
Fnu4HI GCNGC 3 cut(s) 141, 818, 915
FokI GGATG 3 cut(s) 525, 1087, 1134
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 3 cut(s) 141, 818, 915
FspBI CTAG 5 cut(s) 161, 555, 827, 1008, 1309
GluI GCNGC 3 cut(s) 141, 818, 915
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 1 cut(s) 403
HapII CCGG 3 cut(s) 240, 1133, 1146
Hin1II CATG 2 cut(s) 402, 895
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HindIII AAGCTT 2 cut(s) 702, 1215
HinfI GANTC 8 cut(s) 246, 347, 521, 550, 724, 851, 895, 1277
HpaII CCGG 3 cut(s) 240, 1133, 1146
HphI GGTGA 3 cut(s) 99, 553, 1153
Hpy166II GTNNAC 3 cut(s) 117, 307, 832
Hpy188I TCNGA 5 cut(s) 153, 322, 509, 571, 1121
Hpy8I GTNNAC 3 cut(s) 117, 307, 832
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 4 cut(s) 167, 272, 612, 1199
HpyCH4III ACNGT 2 cut(s) 45, 1251
HpyCH4IV ACGT 2 cut(s) 12, 733
HpyCH4V TGCA 2 cut(s) 820, 984
HpyF10VI GCNNNNNNNGC 2 cut(s) 749, 981
HpyF3I CTNAG 7 cut(s) 101, 150, 378, 519, 692, 774, 836
HpySE526I ACGT 2 cut(s) 12, 733
Hsp92II CATG 2 cut(s) 402, 895
Ksp22I TGATCA 1 cut(s) 1261
Kzo9I GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 122, 281
Lsp1109I GCAGC 3 cut(s) 152, 804, 901
LweI GCATC 4 cut(s) 472, 661, 755, 1099
MaeI CTAG 5 cut(s) 161, 555, 827, 1008, 1309
MaeII ACGT 2 cut(s) 12, 733
MaeIII GTNAC 6 cut(s) 394, 649, 745, 769, 1141, 1245
MalI GATC 7 cut(s) 20, 147, 476, 618, 683, 1223, 1263
MboI GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
MfeI CAATTG 1 cut(s) 870
MflI RGATCY 1 cut(s) 18
MhlI GDGCHC 2 cut(s) 127, 338
MluCI AATT 7 cut(s) 72, 356, 424, 870, 927, 1011, 1209
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 2 cut(s) 77, 752
MroXI GAANNNNTTC 2 cut(s) 576, 927
MseI TTAA 2 cut(s) 413, 1304
MspA1I CMGCKG 2 cut(s) 143, 435
MspI CCGG 3 cut(s) 240, 1133, 1146
MunI CAATTG 1 cut(s) 870
MwoI GCNNNNNNNGC 2 cut(s) 749, 981
NdeII GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
NlaIII CATG 2 cut(s) 402, 895
NmeAIII GCCGAG 1 cut(s) 1077
NmuCI GTSAC 4 cut(s) 649, 745, 1141, 1245
NspV TTCGAA 1 cut(s) 677
PaeR7I CTCGAG 1 cut(s) 300
PagI TCATGA 1 cut(s) 891
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 2 cut(s) 1001, 1104
PdmI GAANNNNTTC 2 cut(s) 576, 927
PfeI GAWTC 7 cut(s) 246, 347, 550, 724, 851, 895, 1277
PkrI GCNGC 3 cut(s) 142, 819, 916
PleI GAGTC 1 cut(s) 529
PmaCI CACGTG 1 cut(s) 734
PmlI CACGTG 1 cut(s) 734
PpsI GAGTC 1 cut(s) 529
Ppu21I YACGTR 1 cut(s) 734
Psp124BI GAGCTC 1 cut(s) 127
Psp1406I AACGTT 1 cut(s) 12
PspCI CACGTG 1 cut(s) 734
PspEI GGTNACC 1 cut(s) 1141
PspXI VCTCGAGB 1 cut(s) 300
PstI CTGCAG 1 cut(s) 822
PsuI RGATCY 1 cut(s) 18
PvuII CAGCTG 2 cut(s) 143, 435
RsaI GTAC 2 cut(s) 116, 1106
RsaNI GTAC 2 cut(s) 115, 1105
SacI GAGCTC 1 cut(s) 127
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 413, 1304
SatI GCNGC 3 cut(s) 141, 818, 915
Sau3AI GATC 7 cut(s) 18, 145, 474, 616, 681, 1221, 1261
SchI GAGTC 1 cut(s) 530
SduI GDGCHC 2 cut(s) 127, 338
SfaNI GCATC 4 cut(s) 472, 661, 755, 1099
SfcI CTRYAG 1 cut(s) 818
Sfr274I CTCGAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 677
SlaI CTCGAG 1 cut(s) 300
SmlI CTYRAG 5 cut(s) 194, 300, 329, 526, 899
SmoI CTYRAG 5 cut(s) 194, 300, 329, 526, 899
SpeI ACTAGT 1 cut(s) 826
Sse9I AATT 7 cut(s) 72, 356, 424, 870, 927, 1011, 1209
SsiI CCGC 1 cut(s) 564
SspI AATATT 1 cut(s) 969
SspMI CTAG 5 cut(s) 161, 555, 827, 1008, 1309
SstI GAGCTC 1 cut(s) 127
TaaI ACNGT 2 cut(s) 45, 1251
TaiI ACGT 2 cut(s) 15, 736
TaqI TCGA 4 cut(s) 264, 301, 677, 995
TasI AATT 7 cut(s) 72, 356, 424, 870, 927, 1011, 1209
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 7 cut(s) 246, 347, 550, 724, 851, 895, 1277
Tru1I TTAA 2 cut(s) 413, 1304
Tru9I TTAA 2 cut(s) 413, 1304
TscAI CASTG 3 cut(s) 484, 819, 1254
TseFI GTSAC 4 cut(s) 649, 745, 1141, 1245
TseI GCWGC 3 cut(s) 140, 817, 914
Tsp45I GTSAC 4 cut(s) 649, 745, 1141, 1245
TspDTI ATGAA 2 cut(s) 291, 493
TspGWI ACGGA 1 cut(s) 1247
TspRI CASTG 3 cut(s) 484, 819, 1254
XapI RAATTY 3 cut(s) 72, 927, 1011
XbaI TCTAGA 1 cut(s) 1007
XhoI CTCGAG 1 cut(s) 300
XmnI GAANNNNTTC 2 cut(s) 576, 927
XspI CTAG 5 cut(s) 161, 555, 827, 1008, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.