RchiOBHm_Chr4g0415601

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000200
Physical Location & Seq
Reverse (-)
40368505 .. 40369842
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38583

Sequence Viewer

Length: 1338 bp
ATGTGTTCAGAAATGATGGTTGAAGTGATCGACAAGGAAACAATTACACCATCATCTCCTACTCCTCACCATCTTACAACTTCCAACCTCTCTGTTTTTGATCAGTTTGTACCAGACTTATATGTCCCCATACTTCTCTTCTATCCCAACAATAGTACTACTAATCACAAGGGAAACACGGTTGATCACCACTATTCATTGATTACCGAAAGATCCAAGCTTCTGAAAACTTCATTAGCTGAAGCCCTTAGCCGCTTCTATCCCTTTGCAGGAAAAATATTTTGCCACAACAACATTCTTTCAATCTGTTGTAATGACCATGGTGCGGCATTTATCCAAACCCATGTCAACTGTCCCATATCAAAGGTTTTGGAAAAGCCCCATGATGGGATGCTAAATCAATTACTTCCAAATGGCATAGAATCAACATTTGAAAGCACAGGCTATCTCCTACTAGTCCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGGTTAGCATTTCACATAAGATCGCGGACGCCTTCACACTCGGAACATTCATCTGTAGCTGGGCAACAATGAGCCTTGGCACTGATGTAGTGGCTTTTCCAATTATAGAATTTGGTGTTGCAGCATCTGTTTACCCACCACAAGATTTATTCATCAAGTCATTGCAAACTTCTGGGGAATATGTTTATGGAGATTGTGCAAAAAGGAGATTTGTTTTTGATGCCTCAAATATTCTACGTCTCAAGTCAAAAGCCGTCAGTGTCATCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTCAGCGTTTATTTGGAAATGTGCAATGGATGCATCAAGATCAAACTTGGGTTTTACAATGCCAGCCATGCTATTTCTAGCAGCAAATATGCGGAAAGTATTGGGGTATCCCACTTTAATGGGAAATCTTTTAGGATATGTCTCTGCAGCAAAGGCACAAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAGGCATTGAGAAATTTAAAGTGAAATATGATAATGGAGTTAGTGAAGATGATATCTACCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATATAGATAACTATACTTGTACCAGTTGGTGCAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCGTGGGTCACTATTCCAGGTGTCCCAATCAAGAATCTAATTTTATTGATTGATACAAAAGATGGTGAAGGCATAGAAGCATTCTTGAGTTTAAAAGAAGATGACATGGCTGTAATTGAAACCAATAAGGAGTTCCTTGCGTATGCATCTCTCAATCCTATTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

445

Amino Acids

49.32

Weight (kDa)

5.48

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 434 7.9e-76 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 1116
AccII CGCG 1 cut(s) 521
AciI CCGC 4 cut(s) 253, 326, 521, 883
AclWI GGATC 1 cut(s) 207
AcsI RAATTY 2 cut(s) 605, 1007
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 525
AfaI GTAC 3 cut(s) 111, 157, 1114
AfiI CCNNNNNNNGG 4 cut(s) 269, 325, 386, 387
AgsI TTSAA 8 cut(s) 23, 303, 434, 476, 785, 971, 1063, 1286
AhlI ACTAGT 1 cut(s) 454
AjnI CCWGG 1 cut(s) 1183
AjuI GAANNNNNNNTTGG 4 cut(s) 1134, 1166, 1283, 1315
AluBI AGCT 4 cut(s) 220, 239, 555, 975
AluI AGCT 4 cut(s) 220, 239, 555, 975
Alw26I GTCTC 2 cut(s) 740, 937
AlwI GGATC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 623
ApeKI GCWGC 3 cut(s) 617, 872, 938
ApoI RAATTY 2 cut(s) 605, 1007
AsuHPI GGTGA 3 cut(s) 59, 179, 1244
BauI CACGAG 1 cut(s) 777
BbvI GCAGC 3 cut(s) 629, 884, 950
BccI CCATC 7 cut(s) 10, 58, 78, 380, 1149, 1174, 1223
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 1 cut(s) 1185
BciVI GTATCC 1 cut(s) 909
BclI TGATCA 2 cut(s) 100, 184
BcoDI GTCTC 2 cut(s) 740, 937
BcuI ACTAGT 1 cut(s) 454
BfaI CTAG 2 cut(s) 455, 869
BfmI CTRYAG 2 cut(s) 550, 936
BfuAI ACCTGC 1 cut(s) 1116
BfuI GTATCC 1 cut(s) 909
BisI GCNGC 5 cut(s) 253, 327, 618, 873, 939
BlsI GCNGC 5 cut(s) 254, 328, 619, 874, 940
BmcAI AGTACT 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 1185
BmrFI CCNGG 1 cut(s) 1185
BmsI GCATC 7 cut(s) 381, 629, 706, 811, 833, 949, 1322
Bpu10I CCTNAGC 1 cut(s) 248
BpuEI CTTGAG 2 cut(s) 722, 1273
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 2 cut(s) 319, 571
Bsc4I CCNNNNNNNGG 4 cut(s) 269, 325, 386, 387
Bse1I ACTGG 1 cut(s) 1116
Bse3DI GCAATG 2 cut(s) 656, 822
BseBI CCWGG 1 cut(s) 1185
BseDI CCNNGG 2 cut(s) 319, 571
BseGI GGATG 3 cut(s) 396, 826, 1160
BseLI CCNNNNNNNGG 4 cut(s) 269, 325, 386, 387
BseMI GCAATG 2 cut(s) 656, 822
BseNI ACTGG 1 cut(s) 1116
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 3 cut(s) 629, 884, 950
BseYI CCCAGC 1 cut(s) 555
BsgI GTGCAG 1 cut(s) 1144
Bsh1236I CGCG 1 cut(s) 521
BslFI GGGAC 3 cut(s) 110, 339, 1175
BslI CCNNNNNNNGG 4 cut(s) 269, 325, 386, 387
BsmAI GTCTC 2 cut(s) 740, 937
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 3 cut(s) 110, 339, 1175
BsmI GAATGC 1 cut(s) 1247
Bsp143I GATC 6 cut(s) 27, 100, 184, 212, 516, 830
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 4 cut(s) 253, 326, 521, 883
BspFNI CGCG 1 cut(s) 521
BspMAI CTGCAG 1 cut(s) 940
BspMI ACCTGC 1 cut(s) 1116
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 2 cut(s) 656, 822
BsrI ACTGG 1 cut(s) 1116
BssECI CCNNGG 2 cut(s) 319, 571
BssMI GATC 6 cut(s) 27, 100, 184, 212, 516, 830
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 777
BssT1I CCWWGG 2 cut(s) 319, 571
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 1185
Bst4CI ACNGT 2 cut(s) 181, 353
Bst6I CTCTTC 2 cut(s) 143, 972
BstACI GRCGYC 1 cut(s) 525
BstAPI GCANNNNNTGC 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 319
BstF5I GGATG 3 cut(s) 396, 826, 1160
BstFNI CGCG 1 cut(s) 521
BstKTI GATC 6 cut(s) 30, 103, 187, 215, 519, 833
BstMAI GTCTC 2 cut(s) 740, 937
BstMBI GATC 6 cut(s) 27, 100, 184, 212, 516, 830
BstMWI GCNNNNNNNGC 4 cut(s) 821, 859, 944, 1131
BstNI CCWGG 1 cut(s) 1185
BstSCI CCNGG 1 cut(s) 1183
BstSFI CTRYAG 2 cut(s) 550, 936
BstUI CGCG 1 cut(s) 521
BstV1I GCAGC 3 cut(s) 629, 884, 950
BstX2I RGATCY 1 cut(s) 212
BstXI CCANNNNNNTGG 1 cut(s) 910
BstYI RGATCY 1 cut(s) 212
BsuI GTATCC 1 cut(s) 909
BtgI CCRYGG 1 cut(s) 319
BtsCI GGATG 3 cut(s) 396, 826, 1160
BtsIMutI CAGTG 2 cut(s) 576, 760
BveI ACCTGC 1 cut(s) 1116
Cac8I GCNNGC 1 cut(s) 855
CaiI CAGNNNCTG 1 cut(s) 623
CseI GACGC 1 cut(s) 533
Csp6I GTAC 3 cut(s) 110, 156, 1113
CviAII CATG 6 cut(s) 320, 344, 383, 859, 1070, 1273
CviQI GTAC 3 cut(s) 110, 156, 1113
DdeI CTNAG 1 cut(s) 248
DpnI GATC 6 cut(s) 29, 102, 186, 214, 518, 832
DpnII GATC 6 cut(s) 27, 100, 184, 212, 516, 830
DraI TTTAAA 2 cut(s) 1012, 1260
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 143, 972
EarI CTCTTC 2 cut(s) 143, 972
Eco130I CCWWGG 2 cut(s) 319, 571
Eco32I GATATC 1 cut(s) 1048
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 1183
EcoRV GATATC 1 cut(s) 1048
EcoT14I CCWWGG 2 cut(s) 319, 571
EcoT22I ATGCAT 2 cut(s) 826, 1315
ErhI CCWWGG 2 cut(s) 319, 571
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 6 cut(s) 323, 347, 386, 862, 1073, 1276
FaqI GGGAC 3 cut(s) 110, 339, 1175
FatI CATG 6 cut(s) 319, 343, 382, 858, 1069, 1272
FbaI TGATCA 2 cut(s) 100, 184
Fnu4HI GCNGC 5 cut(s) 253, 327, 618, 873, 939
FokI GGATG 3 cut(s) 403, 833, 1167
Fsp4HI GCNGC 5 cut(s) 253, 327, 618, 873, 939
FspBI CTAG 2 cut(s) 455, 869
GluI GCNGC 5 cut(s) 253, 327, 618, 873, 939
GsaI CCCAGC 1 cut(s) 559
HgaI GACGC 1 cut(s) 533
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 6 cut(s) 323, 347, 386, 862, 1073, 1276
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 2 cut(s) 218, 973
HinfI GANTC 2 cut(s) 422, 1201
HphI GGTGA 3 cut(s) 59, 179, 1244
Hpy166II GTNNAC 3 cut(s) 349, 485, 628
Hpy188I TCNGA 3 cut(s) 10, 225, 539
Hpy188III TCNNGA 3 cut(s) 828, 1198, 1252
Hpy8I GTNNAC 3 cut(s) 349, 485, 628
HpyAV CCTTC 3 cut(s) 538, 989, 1229
HpyCH4III ACNGT 2 cut(s) 181, 353
HpyCH4IV ACGT 1 cut(s) 733
HpyF10VI GCNNNNNNNGC 4 cut(s) 821, 859, 944, 1131
HpyF3I CTNAG 1 cut(s) 248
HpySE526I ACGT 1 cut(s) 733
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 6 cut(s) 323, 347, 386, 862, 1073, 1276
Ksp22I TGATCA 2 cut(s) 100, 184
Kzo9I GATC 6 cut(s) 27, 100, 184, 212, 516, 830
Lsp1109I GCAGC 3 cut(s) 629, 884, 950
LweI GCATC 7 cut(s) 381, 629, 706, 811, 833, 949, 1322
MaeI CTAG 2 cut(s) 455, 869
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 1 cut(s) 1174
MalI GATC 6 cut(s) 29, 102, 186, 214, 518, 832
MboI GATC 6 cut(s) 27, 100, 184, 212, 516, 830
MboII GAAGA 5 cut(s) 130, 959, 1052, 1085, 1277
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 212
MluCI AATT 9 cut(s) 42, 401, 492, 597, 605, 1007, 1147, 1206, 1281
MmeI TCCRAC 2 cut(s) 108, 797
MnlI CCTC 3 cut(s) 75, 98, 730
Mph1103I ATGCAT 2 cut(s) 826, 1315
MseI TTAA 4 cut(s) 908, 1011, 1079, 1259
MslI CAYNNNNRTG 1 cut(s) 908
MspR9I CCNGG 1 cut(s) 1185
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 1247
MvaI CCWGG 1 cut(s) 1185
MvnI CGCG 1 cut(s) 521
MwoI GCNNNNNNNGC 4 cut(s) 821, 859, 944, 1131
NcoI CCATGG 1 cut(s) 319
NdeII GATC 6 cut(s) 27, 100, 184, 212, 516, 830
NlaIII CATG 6 cut(s) 323, 347, 386, 862, 1073, 1276
NmuCI GTSAC 1 cut(s) 1174
NsiI ATGCAT 2 cut(s) 826, 1315
PctI GAATGC 1 cut(s) 1247
PfeI GAWTC 2 cut(s) 422, 1201
PkrI GCNGC 5 cut(s) 254, 328, 619, 874, 940
Psp6I CCWGG 1 cut(s) 1183
PspFI CCCAGC 1 cut(s) 555
PspGI CCWGG 1 cut(s) 1183
PstI CTGCAG 1 cut(s) 940
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 3 cut(s) 111, 157, 1114
RsaNI GTAC 3 cut(s) 110, 156, 1113
RseI CAYNNNNRTG 1 cut(s) 908
SaqAI TTAA 4 cut(s) 908, 1011, 1079, 1259
SatI GCNGC 5 cut(s) 253, 327, 618, 873, 939
Sau3AI GATC 6 cut(s) 27, 100, 184, 212, 516, 830
ScaI AGTACT 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 1185
SetI ASST 9 cut(s) 90, 222, 241, 369, 557, 736, 977, 1130, 1189
SfaNI GCATC 7 cut(s) 381, 629, 706, 811, 833, 949, 1322
SfcI CTRYAG 2 cut(s) 550, 936
SmiMI CAYNNNNRTG 1 cut(s) 908
SmlI CTYRAG 2 cut(s) 737, 1252
SmoI CTYRAG 2 cut(s) 737, 1252
SpeI ACTAGT 1 cut(s) 454
Sse9I AATT 9 cut(s) 42, 401, 492, 597, 605, 1007, 1147, 1206, 1281
SsiI CCGC 4 cut(s) 253, 326, 521, 883
SspI AATATT 2 cut(s) 279, 727
SspMI CTAG 2 cut(s) 455, 869
StyD4I CCNGG 1 cut(s) 1183
StyI CCWWGG 2 cut(s) 319, 571
TaaI ACNGT 2 cut(s) 181, 353
TaiI ACGT 1 cut(s) 736
TaqI TCGA 1 cut(s) 30
TasI AATT 9 cut(s) 42, 401, 492, 597, 605, 1007, 1147, 1206, 1281
TatI WGTACW 1 cut(s) 155
TauI GCSGC 2 cut(s) 255, 329
TfiI GAWTC 2 cut(s) 422, 1201
Tru1I TTAA 4 cut(s) 908, 1011, 1079, 1259
Tru9I TTAA 4 cut(s) 908, 1011, 1079, 1259
TscAI CASTG 2 cut(s) 583, 760
TseFI GTSAC 1 cut(s) 1174
TseI GCWGC 3 cut(s) 617, 872, 938
Tsp45I GTSAC 1 cut(s) 1174
TspDTI ATGAA 6 cut(s) 186, 222, 535, 637, 1086, 1155
TspRI CASTG 2 cut(s) 583, 760
XapI RAATTY 2 cut(s) 605, 1007
XspI CTAG 2 cut(s) 455, 869
ZrmI AGTACT 1 cut(s) 157
Zsp2I ATGCAT 2 cut(s) 826, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.