MD05G1218500.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000200
Physical Location & Seq
Reverse (-)
34908804 .. 34910156
1353 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1218500.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGGCCACAGAAATCAAGGTAGAAATTATTGAGAGGCAAACAATTAAACCATCCACCTCAACTCCTCATCACTTGAGAAGTTATGAGCTCTCTTTTCTCGATCAGATGGCTATCGTAATTTACACCCCACTCCTTCTCTTCTATCCTATTACCAGTACTACTAGTAAGGTTAGTACTCGCCACCATGCTATGAGCATAGATGAAAAATGCCGGCATCTAATAGAATCATTAGCTAAAACTCTCACGCACTTCTACCCTTTAGCAGGAAGGATTGTGAAAGGTAACATAGTCGAGTGCACCGATGATGGAGCTGCATTTATAACAGCACGAATCAGCTGTTGCTTGTCGGATATTTTGGAAAACCCAGATGGCCAGATATTGAAACGATTCCTTCCAATTGAAATTGAATCCAAAGAAGCGGGCACAGGCTGGTTGCTGCTTGTACAAGTTAACTTGTTTGAGTGTGGTGGAATGGCAATTGGGTTGAGCATTTCACATAGGATTGCTGATGCATCAACACTATGCACATTCATCAACTGTTGGGCCACAATAGCCCTTGGGTCAAGTGACAGTGATCAGGTACTAAACCTTCCAGAATTTGGTGCTGCATCTGTTTTTAAACCAATAGAATTTTCTAGCTCATCTCAGCCACCAGCAAGAGAAGTCGTCAAAGAAAAATGCATAACACAGAGGTATGTTTTTGATGCCCCAAAGATTTCCACTCTCCAATCTGAAGTAGCCAGTTCAGTTGTGGCCAAACCTACACGAGTAGAAGCGGTTTCAGCACTCATTTGGAAGTGTGCAACCGAAGCATCGAGATCAAACTTGAGGAAGCAAGGGCCTTCATTTTTCCGTCAAGATGTGAACTTGCGTAAAAGGGTTGTGCCTCCCTTGCCAGAAAACTTGGCTGGGAATGTTGTGGGTTCCTTTACATCAAGGGCTGATGAAGAGAGTAGTGTGATAAATCTAAAAGACTTGGTTGCTAAATTGAGGGAAGGCATTGAAGGACTGAAAGAAAAATATGCTGCAAAACTTGTCTTTGATTCTGATGAGGCATGGCAAGAAATCAAAGATAAGCAGAATAAGCCGAAAACTCATGACAACATGGAGATTTATAGCTGCACAAGTTGGTGTAGGTTTCCTTTGTACGAAGCCGATTTCGGATGGGGAAGACCATCATGGGTAAGCGTAGCTAGTATTGCAATTAAGAACATAATTGTTTTGATGGACAAAAGAGATTGCAGCGGAATTGAAGCATGGGTGACTATGAGTGAAGAAAGCAAGGCCTTATTTGAAAGCAATGTGGAACTGCTTGGGTATGCTTCTGTAAATCCAAGTGTGATTGACACCTAG

Protein Analysis

451

Amino Acids

49.92

Weight (kDa)

5.87

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 437 2.7e-84 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 599
AciI CCGC 3 cut(s) 419, 776, 1245
AcoI YGGCCR 3 cut(s) 3, 370, 753
AcsI RAATTY 2 cut(s) 596, 629
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 5 cut(s) 157, 175, 444, 582, 1148
AfiI CCNNNNNNNGG 2 cut(s) 263, 599
AgsI TTSAA 6 cut(s) 382, 401, 407, 1004, 1253, 1295
AhlI ACTAGT 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AluBI AGCT 7 cut(s) 88, 233, 311, 336, 639, 1119, 1193
AluI AGCT 7 cut(s) 88, 233, 311, 336, 639, 1119, 1193
Alw21I GWGCWC 2 cut(s) 90, 299
Alw44I GTGCAC 1 cut(s) 295
AoxI GGCC 6 cut(s) 3, 370, 543, 753, 839, 1284
ApaLI GTGCAC 1 cut(s) 295
ApeKI GCWGC 6 cut(s) 311, 436, 605, 1025, 1119, 1242
ApoI RAATTY 2 cut(s) 596, 629
Asp700I GAANNNNTTC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 543, 839
AsuHPI GGTGA 1 cut(s) 1273
BaeGI GKGCMC 2 cut(s) 299, 425
BalI TGGCCA 3 cut(s) 5, 372, 755
BanII GRGCYC 1 cut(s) 90
BarI GAAGNNNNNNTAC 2 cut(s) 573, 605
BauI CACGAG 1 cut(s) 765
BbsI GAAGAC 1 cut(s) 1177
Bbv12I GWGCWC 2 cut(s) 90, 299
BbvI GCAGC 6 cut(s) 298, 423, 592, 1012, 1106, 1254
BccI CCATC 7 cut(s) 58, 100, 299, 362, 1158, 1183, 1219
BclI TGATCA 1 cut(s) 574
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 4 cut(s) 162, 636, 1194, 1351
BisI GCNGC 6 cut(s) 312, 437, 606, 1026, 1120, 1243
BlsI GCNGC 6 cut(s) 313, 438, 607, 1027, 1121, 1244
BmcAI AGTACT 2 cut(s) 157, 175
BmgT120I GGNCC 2 cut(s) 543, 839
BmiI GGNNCC 1 cut(s) 925
BmsI GCATC 6 cut(s) 223, 499, 521, 617, 694, 821
BpiI GAAGAC 1 cut(s) 1177
BpuEI CTTGAG 2 cut(s) 94, 847
BsaBI GATNNNNATC 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 556
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 599
Bse118I RCCGGY 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 153, 741
Bse3DI GCAATG 1 cut(s) 1306
Bse8I GATNNNNATC 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 556
BseGI GGATG 2 cut(s) 50, 1169
BseJI GATNNNNATC 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 263, 599
BseMI GCAATG 1 cut(s) 1306
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 2 cut(s) 153, 741
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 2 cut(s) 299, 425
BseXI GCAGC 6 cut(s) 298, 423, 592, 1012, 1106, 1254
BseYI CCCAGC 1 cut(s) 908
BsgI GTGCAG 1 cut(s) 1105
BshFI GGCC 6 cut(s) 5, 372, 545, 755, 841, 1286
BsiHKAI GWGCWC 2 cut(s) 90, 299
BsiSI CCGG 1 cut(s) 211
BslI CCNNNNNNNGG 2 cut(s) 263, 599
BsnI GGCC 6 cut(s) 5, 372, 545, 755, 841, 1286
Bsp1286I GDGCHC 3 cut(s) 90, 299, 425
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 3 cut(s) 100, 574, 818
BspACI CCGC 3 cut(s) 419, 776, 1245
BspANI GGCC 6 cut(s) 5, 372, 545, 755, 841, 1286
BspCNI CTCAG 1 cut(s) 658
BspHI TCATGA 1 cut(s) 1096
BspLI GGNNCC 1 cut(s) 925
BsrDI GCAATG 1 cut(s) 1306
BsrFI RCCGGY 1 cut(s) 210
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 2 cut(s) 153, 741
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 556
BssMI GATC 3 cut(s) 100, 574, 818
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 1 cut(s) 556
Bst2BI CACGAG 1 cut(s) 765
Bst4CI ACNGT 2 cut(s) 539, 572
Bst6I CTCTTC 2 cut(s) 143, 942
BstAUI TGTACA 1 cut(s) 442
BstC8I GCNNGC 2 cut(s) 212, 421
BstDEI CTNAG 1 cut(s) 645
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 50, 1169
BstKTI GATC 3 cut(s) 103, 577, 821
BstMBI GATC 3 cut(s) 100, 574, 818
BstMWI GCNNNNNNNGC 6 cut(s) 551, 782, 809, 892, 1084, 1199
BstSLI GKGCMC 2 cut(s) 299, 425
BstV1I GCAGC 6 cut(s) 298, 423, 592, 1012, 1106, 1254
BstV2I GAAGAC 1 cut(s) 1177
BsuRI GGCC 6 cut(s) 5, 372, 545, 755, 841, 1286
BtsCI GGATG 2 cut(s) 50, 1169
BtsIMutI CAGTG 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 212, 421
CciI TCATGA 1 cut(s) 1096
Cfr10I RCCGGY 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 543, 839
Csp6I GTAC 5 cut(s) 156, 174, 443, 581, 1147
CviAII CATG 6 cut(s) 185, 1056, 1097, 1105, 1179, 1257
CviQI GTAC 5 cut(s) 156, 174, 443, 581, 1147
DdeI CTNAG 1 cut(s) 645
DpnI GATC 3 cut(s) 102, 576, 820
DpnII GATC 3 cut(s) 100, 574, 818
DraI TTTAAA 1 cut(s) 619
EaeI YGGCCR 3 cut(s) 3, 370, 753
Eam1104I CTCTTC 2 cut(s) 143, 942
EarI CTCTTC 2 cut(s) 143, 942
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 556
Eco147I AGGCCT 1 cut(s) 1286
Eco24I GRGCYC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 753
EcoICRI GAGCTC 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 839
EcoT14I CCWWGG 1 cut(s) 556
EcoT22I ATGCAT 2 cut(s) 514, 683
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 556
FaeI CATG 6 cut(s) 188, 1059, 1100, 1108, 1182, 1260
FatI CATG 6 cut(s) 184, 1055, 1096, 1104, 1178, 1256
FauI CCCGC 1 cut(s) 412
FbaI TGATCA 1 cut(s) 574
Fnu4HI GCNGC 6 cut(s) 312, 437, 606, 1026, 1120, 1243
FokI GGATG 2 cut(s) 37, 1176
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 6 cut(s) 312, 437, 606, 1026, 1120, 1243
FspBI CTAG 4 cut(s) 162, 636, 1194, 1351
GluI GCNGC 6 cut(s) 312, 437, 606, 1026, 1120, 1243
GsaI CCCAGC 1 cut(s) 912
HaeIII GGCC 6 cut(s) 5, 372, 545, 755, 841, 1286
HapII CCGG 1 cut(s) 211
Hin1II CATG 6 cut(s) 188, 1059, 1100, 1108, 1182, 1260
HincII GTYRAC 1 cut(s) 451
HindII GTYRAC 1 cut(s) 451
HinfI GANTC 5 cut(s) 224, 330, 387, 407, 1043
HpaI GTTAAC 1 cut(s) 451
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 1273
Hpy166II GTNNAC 3 cut(s) 297, 451, 865
Hpy188I TCNGA 5 cut(s) 105, 349, 733, 1048, 1163
Hpy188III TCNNGA 5 cut(s) 98, 593, 816, 857, 1097
Hpy8I GTNNAC 3 cut(s) 297, 451, 865
HpyAV CCTTC 7 cut(s) 143, 261, 401, 599, 852, 989, 998
HpyCH4III ACNGT 2 cut(s) 539, 572
HpyF10VI GCNNNNNNNGC 6 cut(s) 551, 782, 809, 892, 1084, 1199
HpyF3I CTNAG 1 cut(s) 645
Hsp92II CATG 6 cut(s) 188, 1059, 1100, 1108, 1182, 1260
KroI GCCGGC 1 cut(s) 210
KroNI GCCGGC 1 cut(s) 212
Ksp22I TGATCA 1 cut(s) 574
KspAI GTTAAC 1 cut(s) 451
Kzo9I GATC 3 cut(s) 100, 574, 818
LmnI GCTCC 1 cut(s) 308
Lsp1109I GCAGC 6 cut(s) 298, 423, 592, 1012, 1106, 1254
LweI GCATC 6 cut(s) 223, 499, 521, 617, 694, 821
MaeI CTAG 4 cut(s) 162, 636, 1194, 1351
MaeIII GTNAC 3 cut(s) 281, 566, 1261
MalI GATC 3 cut(s) 102, 576, 820
MboI GATC 3 cut(s) 100, 574, 818
MboII GAAGA 4 cut(s) 130, 959, 1182, 1286
MfeI CAATTG 2 cut(s) 396, 477
MhlI GDGCHC 3 cut(s) 90, 299, 425
MlsI TGGCCA 3 cut(s) 5, 372, 755
MluNI TGGCCA 3 cut(s) 5, 372, 755
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 8 cut(s) 27, 67, 75, 684, 822, 897, 984, 1045
Mox20I TGGCCA 3 cut(s) 5, 372, 755
Mph1103I ATGCAT 2 cut(s) 514, 683
MroNI GCCGGC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 386
MscI TGGCCA 3 cut(s) 5, 372, 755
MseI TTAA 4 cut(s) 45, 450, 618, 1206
Msp20I TGGCCA 3 cut(s) 5, 372, 755
MspA1I CMGCKG 2 cut(s) 336, 1245
MspI CCGG 1 cut(s) 211
MunI CAATTG 2 cut(s) 396, 477
MwoI GCNNNNNNNGC 6 cut(s) 551, 782, 809, 892, 1084, 1199
NaeI GCCGGC 1 cut(s) 212
NdeII GATC 3 cut(s) 100, 574, 818
NgoMIV GCCGGC 1 cut(s) 210
NlaIII CATG 6 cut(s) 188, 1059, 1100, 1108, 1182, 1260
NlaIV GGNNCC 1 cut(s) 925
NmuCI GTSAC 2 cut(s) 566, 1261
NsiI ATGCAT 2 cut(s) 514, 683
PagI TCATGA 1 cut(s) 1096
PceI AGGCCT 1 cut(s) 1286
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdiI GCCGGC 1 cut(s) 212
PdmI GAANNNNTTC 1 cut(s) 386
PfeI GAWTC 5 cut(s) 224, 330, 387, 407, 1043
PflMI CCANNNNNTGG 1 cut(s) 599
PkrI GCNGC 6 cut(s) 313, 438, 607, 1027, 1121, 1244
PsiI TTATAA 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 908
PspN4I GGNNCC 1 cut(s) 925
PspPI GGNCC 2 cut(s) 543, 839
PvuII CAGCTG 1 cut(s) 336
RsaI GTAC 5 cut(s) 157, 175, 444, 582, 1148
RsaNI GTAC 5 cut(s) 156, 174, 443, 581, 1147
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 4 cut(s) 45, 450, 618, 1206
SatI GCNGC 6 cut(s) 312, 437, 606, 1026, 1120, 1243
Sau3AI GATC 3 cut(s) 100, 574, 818
Sau96I GGNCC 2 cut(s) 543, 839
ScaI AGTACT 2 cut(s) 157, 175
SduI GDGCHC 3 cut(s) 90, 299, 425
SfaNI GCATC 6 cut(s) 223, 499, 521, 617, 694, 821
SmlI CTYRAG 2 cut(s) 73, 826
SmoI CTYRAG 2 cut(s) 73, 826
SpeI ACTAGT 1 cut(s) 161
SseBI AGGCCT 1 cut(s) 1286
SsiI CCGC 3 cut(s) 419, 776, 1245
SspMI CTAG 4 cut(s) 162, 636, 1194, 1351
SstI GAGCTC 1 cut(s) 90
StuI AGGCCT 1 cut(s) 1286
StyI CCWWGG 1 cut(s) 556
TaaI ACNGT 2 cut(s) 539, 572
TaqI TCGA 3 cut(s) 99, 291, 815
TatI WGTACW 3 cut(s) 155, 173, 442
TfiI GAWTC 5 cut(s) 224, 330, 387, 407, 1043
Tru1I TTAA 4 cut(s) 45, 450, 618, 1206
Tru9I TTAA 4 cut(s) 45, 450, 618, 1206
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 2 cut(s) 566, 1261
TseI GCWGC 6 cut(s) 311, 436, 605, 1025, 1119, 1242
Tsp45I GTSAC 2 cut(s) 566, 1261
TspDTI ATGAA 4 cut(s) 216, 520, 834, 960
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 1 cut(s) 577
Van91I CCANNNNNTGG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 295
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 2 cut(s) 596, 629
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XmnI GAANNNNTTC 1 cut(s) 386
XspI CTAG 4 cut(s) 162, 636, 1194, 1351
ZrmI AGTACT 2 cut(s) 157, 175
Zsp2I ATGCAT 2 cut(s) 514, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.