RchiOBHm_Chr4g0408021

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000200
Physical Location & Seq
Reverse (-)
30372570 .. 30373952
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37921

Sequence Viewer

Length: 1383 bp
ATGAATTTTTTTATTAAGAAACTCATATACGTTTGGAGCAAAATGTGTTCAGAAATGGTGATCGAAGTAATCAGTAAGGAAACAGTTACACCATCATCTTCTTCTCTTCACCACCTTAGAACTTCCAACCTCTCTGTTTTTGATCATCTTGTACCAGACTTTTATATCCCCATACTTTTCTTCTATCCCAACAATAGTATTACTGATCATAAGATCAATATAGTTGATCATCACCACTCTATGATTATCGAAAGATCTAAGCTTCTGAAAACTTCATTATCTAAAACCCTCAGCCGCTTTTATCCCTTTGCAGGAAGAATATTTAGTCACAACAACATTCTTTCAATCTGTTGCAATGACAATGGGGCTGCATTTATTGAAACTCGTGTCAATTGTCCCATATCAAAGGTTATGGAAAAGCACAATTCTGGGATACTAAGTCAATTACTTCCCAATGACCCACAATCAACATTTGAAAGCACAGGTTATCTCCTATTAGTCCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGATTACCATTTCACACAAGATCGCGGACGGGTTTACACTCGGAACATTCATCCGTAGCTGGGCAGCAATGTGCCTTAGCTCTAATGGAATGGCTCTTCCAGCTACAGAATTTTGTGTTCCAGCATCTCTTTACCCACAACAAGATTTATTCATCAACTCATTGTCAACTTCCAGGGAACATGTTAATAGTGAAGCTTGTGTCAATAAGAGATTTGTGTTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACCAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAACACTTCTTTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGAGTTTTACAAGGCCAGCTATGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGAAGCATCCCACTTTAATGGGAAATCTTGTAGGATGTGTCTTTGCAGCAAAGACACAAGAAGGTGATGCAACTCTTCAAAGCTTAGTTGCTATACTCAGGAAAAGCATTGAGGAATTTAAAGTGAAATATGGTGAAGGAGTTAGCAGGGATGCTATTTGCCAACATTTTAAAGAGCATGGAGATTTAATGGATAATAATGATATAAATAACTATTTCTGTAGCAGTTGGTGTAAGTTTGGCTTTTATGAAGCCAATTTTGGATGGGGAAAGCCATCTTGGGTCACTTTTCCAGGTATGAAAATCAAGAATACAATTGTGTTGATTGATACAAAAGACGGTGAAGGCATGGAAGCGTTCTTGAGTTTAAAAGAAGAGGACATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTCAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

460

Amino Acids

51.46

Weight (kDa)

7.91

Isoelectric Point (pI)

42.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 20 - 449 1.9e-81 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 563
AciI CCGC 3 cut(s) 295, 563, 928
AcsI RAATTY 3 cut(s) 4, 647, 1052
AfaI GTAC 2 cut(s) 153, 777
AfiI CCNNNNNNNGG 2 cut(s) 311, 598
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 8 cut(s) 345, 380, 476, 518, 830, 940, 1016, 1331
AjnI CCWGG 2 cut(s) 710, 1228
AjuI GAANNNNNNNTTGG 4 cut(s) 1179, 1198, 1211, 1230
AluBI AGCT 8 cut(s) 262, 597, 618, 641, 734, 902, 1020, 1345
AluI AGCT 8 cut(s) 262, 597, 618, 641, 734, 902, 1020, 1345
Alw26I GTCTC 1 cut(s) 785
AoxI GGCC 1 cut(s) 896
ApeKI GCWGC 5 cut(s) 368, 602, 917, 983, 1345
ApoI RAATTY 3 cut(s) 4, 647, 1052
AsuHPI GGTGA 6 cut(s) 70, 101, 224, 1013, 1082, 1289
BauI CACGAG 2 cut(s) 384, 822
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 5 cut(s) 355, 614, 929, 995, 1332
BccI CCATC 3 cut(s) 100, 1194, 1219
BciT130I CCWGG 2 cut(s) 712, 1230
BciVI GTATCC 1 cut(s) 426
BclI TGATCA 3 cut(s) 142, 205, 226
BcoDI GTCTC 1 cut(s) 785
BfaI CTAG 1 cut(s) 914
BfmI CTRYAG 2 cut(s) 642, 1156
BfuI GTATCC 1 cut(s) 426
BglII AGATCT 1 cut(s) 254
BisI GCNGC 6 cut(s) 295, 369, 603, 918, 984, 1346
BlsI GCNGC 6 cut(s) 296, 370, 604, 919, 985, 1347
Bme1390I CCNGG 2 cut(s) 712, 1230
BmrFI CCNGG 2 cut(s) 712, 1230
BmsI GCATC 6 cut(s) 671, 751, 878, 952, 994, 1078
Bpu10I CCTNAGC 2 cut(s) 290, 614
BpuEI CTTGAG 3 cut(s) 767, 904, 1318
BsaJI CCNNGG 1 cut(s) 711
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 598
Bse1I ACTGG 1 cut(s) 798
Bse3DI GCAATG 3 cut(s) 361, 612, 867
BseBI CCWGG 2 cut(s) 712, 1230
BseDI CCNNGG 1 cut(s) 711
BseGI GGATG 5 cut(s) 588, 943, 977, 1093, 1205
BseLI CCNNNNNNNGG 2 cut(s) 311, 598
BseMI GCAATG 3 cut(s) 361, 612, 867
BseMII CTCAG 2 cut(s) 304, 1048
BseNI ACTGG 1 cut(s) 798
BseXI GCAGC 5 cut(s) 355, 614, 929, 995, 1332
BseYI CCCAGC 1 cut(s) 597
Bsh1236I CGCG 1 cut(s) 563
BshFI GGCC 1 cut(s) 898
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 2 cut(s) 311, 598
BsmAI GTCTC 1 cut(s) 785
BsmBI CGTCTC 1 cut(s) 785
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 1 cut(s) 898
Bsp143I GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
BspACI CCGC 3 cut(s) 295, 563, 928
BspANI GGCC 1 cut(s) 898
BspCNI CTCAG 2 cut(s) 303, 1047
BspFNI CGCG 1 cut(s) 563
BspQI GCTCTTC 1 cut(s) 639
BsrDI GCAATG 3 cut(s) 361, 612, 867
BsrI ACTGG 1 cut(s) 798
BssECI CCNNGG 1 cut(s) 711
BssMI GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
BssSI CACGAG 2 cut(s) 384, 822
Bst2BI CACGAG 2 cut(s) 384, 822
Bst2UI CCWGG 2 cut(s) 712, 1230
Bst4CI ACNGT 4 cut(s) 85, 808, 1277, 1375
Bst6I CTCTTC 4 cut(s) 111, 639, 1017, 1305
BstC8I GCNNGC 2 cut(s) 900, 1350
BstDEI CTNAG 7 cut(s) 116, 258, 290, 437, 614, 1021, 1034
BstF5I GGATG 5 cut(s) 588, 943, 977, 1093, 1205
BstFNI CGCG 1 cut(s) 563
BstKTI GATC 8 cut(s) 63, 145, 208, 216, 229, 257, 561, 878
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
BstMWI GCNNNNNNNGC 4 cut(s) 638, 800, 866, 904
BstNI CCWGG 2 cut(s) 712, 1230
BstNSI RCATGY 2 cut(s) 722, 928
BstSCI CCNGG 2 cut(s) 710, 1228
BstSFI CTRYAG 2 cut(s) 642, 1156
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 5 cut(s) 355, 614, 929, 995, 1332
BstX2I RGATCY 1 cut(s) 254
BstXI CCANNNNNNTGG 1 cut(s) 955
BstYI RGATCY 1 cut(s) 254
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 1 cut(s) 898
BtsCI GGATG 5 cut(s) 588, 943, 977, 1093, 1205
BtsIMutI CAGTG 2 cut(s) 805, 1371
Cac8I GCNNGC 2 cut(s) 900, 1350
Csp6I GTAC 2 cut(s) 152, 776
CviAII CATG 5 cut(s) 719, 925, 1115, 1285, 1318
CviQI GTAC 2 cut(s) 152, 776
DdeI CTNAG 7 cut(s) 116, 258, 290, 437, 614, 1021, 1034
DpnI GATC 8 cut(s) 62, 144, 207, 215, 228, 256, 560, 877
DpnII GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
DraI TTTAAA 3 cut(s) 1057, 1108, 1305
Eam1104I CTCTTC 4 cut(s) 111, 639, 1017, 1305
EarI CTCTTC 4 cut(s) 111, 639, 1017, 1305
EcoRII CCWGG 2 cut(s) 710, 1228
Esp3I CGTCTC 1 cut(s) 785
FaeI CATG 5 cut(s) 722, 928, 1118, 1288, 1321
FalI AAGNNNNNCTT 2 cut(s) 1163, 1195
FaqI GGGAC 1 cut(s) 381
FatI CATG 5 cut(s) 718, 924, 1114, 1284, 1317
FauNDI CATATG 1 cut(s) 1354
FbaI TGATCA 3 cut(s) 142, 205, 226
Fnu4HI GCNGC 6 cut(s) 295, 369, 603, 918, 984, 1346
FokI GGATG 5 cut(s) 575, 930, 984, 1100, 1212
Fsp4HI GCNGC 6 cut(s) 295, 369, 603, 918, 984, 1346
FspBI CTAG 1 cut(s) 914
GluI GCNGC 6 cut(s) 295, 369, 603, 918, 984, 1346
GsaI CCCAGC 1 cut(s) 601
HaeIII GGCC 1 cut(s) 898
Hin1II CATG 5 cut(s) 722, 928, 1118, 1288, 1321
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 3 cut(s) 260, 732, 1018
HphI GGTGA 6 cut(s) 70, 101, 224, 1013, 1082, 1289
Hpy166II GTNNAC 3 cut(s) 527, 573, 705
Hpy188I TCNGA 3 cut(s) 52, 267, 581
Hpy188III TCNNGA 4 cut(s) 873, 1036, 1243, 1297
Hpy8I GTNNAC 3 cut(s) 527, 573, 705
HpyAV CCTTC 3 cut(s) 992, 1067, 1274
HpyCH4III ACNGT 4 cut(s) 85, 808, 1277, 1375
HpyCH4IV ACGT 2 cut(s) 30, 778
HpyCH4V TGCA 8 cut(s) 311, 354, 371, 533, 860, 983, 1007, 1352
HpyF10VI GCNNNNNNNGC 4 cut(s) 638, 800, 866, 904
HpyF3I CTNAG 7 cut(s) 116, 258, 290, 437, 614, 1021, 1034
HpySE526I ACGT 2 cut(s) 30, 778
Hsp92II CATG 5 cut(s) 722, 928, 1118, 1288, 1321
Ksp22I TGATCA 3 cut(s) 142, 205, 226
Kzo9I GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
LguI GCTCTTC 1 cut(s) 639
LmnI GCTCC 2 cut(s) 36, 1342
Lsp1109I GCAGC 5 cut(s) 355, 614, 929, 995, 1332
LweI GCATC 6 cut(s) 671, 751, 878, 952, 994, 1078
MaeI CTAG 1 cut(s) 914
MaeII ACGT 2 cut(s) 30, 778
MaeIII GTNAC 4 cut(s) 85, 326, 835, 1219
MalI GATC 8 cut(s) 62, 144, 207, 215, 228, 256, 560, 877
MboI GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
MboII GAAGA 8 cut(s) 90, 93, 98, 172, 327, 626, 1004, 1322
MfeI CAATTG 3 cut(s) 391, 534, 1251
MflI RGATCY 1 cut(s) 254
MmeI TCCRAC 2 cut(s) 150, 842
MnlI CCTC 5 cut(s) 140, 299, 775, 1042, 1306
MseI TTAA 7 cut(s) 15, 723, 953, 1056, 1107, 1124, 1304
MslI CAYNNNNRTG 1 cut(s) 953
MspR9I CCNGG 2 cut(s) 712, 1230
MunI CAATTG 3 cut(s) 391, 534, 1251
MvaI CCWGG 2 cut(s) 712, 1230
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 4 cut(s) 638, 800, 866, 904
NdeI CATATG 1 cut(s) 1354
NdeII GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
NlaIII CATG 5 cut(s) 722, 928, 1118, 1288, 1321
NmuCI GTSAC 3 cut(s) 326, 835, 1219
NspI RCATGY 2 cut(s) 722, 928
PciI ACATGT 1 cut(s) 718
PciSI GCTCTTC 1 cut(s) 639
PkrI GCNGC 6 cut(s) 296, 370, 604, 919, 985, 1347
PscI ACATGT 1 cut(s) 718
Psp6I CCWGG 2 cut(s) 710, 1228
PspFI CCCAGC 1 cut(s) 597
PspGI CCWGG 2 cut(s) 710, 1228
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 2 cut(s) 153, 777
RsaNI GTAC 2 cut(s) 152, 776
RseI CAYNNNNRTG 1 cut(s) 953
SapI GCTCTTC 1 cut(s) 639
SaqAI TTAA 7 cut(s) 15, 723, 953, 1056, 1107, 1124, 1304
SatI GCNGC 6 cut(s) 295, 369, 603, 918, 984, 1346
Sau3AI GATC 8 cut(s) 60, 142, 205, 213, 226, 254, 558, 875
ScrFI CCNGG 2 cut(s) 712, 1230
SfaNI GCATC 6 cut(s) 671, 751, 878, 952, 994, 1078
SfcI CTRYAG 2 cut(s) 642, 1156
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 3 cut(s) 782, 883, 1297
SmoI CTYRAG 3 cut(s) 782, 883, 1297
SsiI CCGC 3 cut(s) 295, 563, 928
SspI AATATT 2 cut(s) 321, 772
SspMI CTAG 1 cut(s) 914
StyD4I CCNGG 2 cut(s) 710, 1228
TaaI ACNGT 4 cut(s) 85, 808, 1277, 1375
TaiI ACGT 2 cut(s) 33, 781
TaqI TCGA 2 cut(s) 63, 249
TauI GCSGC 1 cut(s) 297
Tru1I TTAA 7 cut(s) 15, 723, 953, 1056, 1107, 1124, 1304
Tru9I TTAA 7 cut(s) 15, 723, 953, 1056, 1107, 1124, 1304
TscAI CASTG 2 cut(s) 805, 1378
TseFI GTSAC 3 cut(s) 326, 835, 1219
TseI GCWGC 5 cut(s) 368, 602, 917, 983, 1345
Tsp45I GTSAC 3 cut(s) 326, 835, 1219
TspDTI ATGAA 6 cut(s) 17, 264, 577, 679, 1200, 1250
TspGWI ACGGA 1 cut(s) 581
TspRI CASTG 2 cut(s) 805, 1378
XapI RAATTY 3 cut(s) 4, 647, 1052
XceI RCATGY 2 cut(s) 722, 928
XspI CTAG 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.