Rroxscaffold_4G00321070

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000200
Physical Location & Seq
Forward (+)
50203780 .. 50205108
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00321070.1

Sequence Viewer

Length: 1329 bp
ATGATTGTTGAAGTAATCAACAAGGAGACAATTACACCATCATCTTCTACTCTTCACCACCTTACAACTTCCAGCCTCTCTGTTTTTGATCAGTTTATACAAGATTGTTATGTCCCCCTACTTCTCTTCTATCCCAACAATAGTACTACTAATCATAAGATCAATACAGTTGATGACCACCACTCTATGATTTCCGAAAGATCCAAGCTTCTTAAAACTTCATTATCTGAAACCCTTATCCGCTTCTATCCCTTTGCTGGAAGAATATTTAGCCACAATAACATTCTTTTAATCTGTTGCAATGACAATGGGGCGGCATTTATCCAAACCCGTGTCAATTGTCCCATATCAAAGGTTTTGGAAAAGCACCATCCTCGGACACTAAATCAATTACTTCCCAAAGACATAGAATCGACAACTGAAAGCACAGACTATCTCCTATTAGTTCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGGTTAGCATTTCACATAAAATCGCGGATGGCTTCACACTCGGAACATTCATTCGTAATCTGGGCAGCAATGAGCCTTGGCTCGATATAGCGGCTTTTCCAACTGCAGAGTTTGGTATTCCAGCATCTCCTTACCCCTCACAAGATTTGGTCATCAACTCATTGTCAACTTCCATGAAACACGATAATAATGAAGCTTATGTAACAAGGAGATTTGTATTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACTAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTCAGCACTTATTTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGGGTTTTACAAGGCCGGCCCAGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGGAGCATCCCACTTTAATGGGAAATCTTATAGGAGTTGTACATATAGTCAAGACACAAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAACCATTGAGGAATTTAAAGTGAAATATTGTAATGGAGCTAGTGGGGATGATATCTGCCAACATTTTAATGAGCACAGAGATTTAATAGGTAAGGATGATATAAATAGCTATGGAATTACCAGTTGGTGCAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCTTGGGTCACTATTCCAGGTATGCCATTCAAGAATGTAATTGTATTGATTGACACAAAAGATGGTGAAGGCATGGAAGCGATCGTGAGTTTTAAAGAAAAAGAGATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTTAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

442

Amino Acids

49.26

Weight (kDa)

6.07

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 431 3.3e-76 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1107
AccII CGCG 1 cut(s) 509
AciI CCGC 5 cut(s) 241, 314, 509, 575, 874
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 998
AfaI GTAC 3 cut(s) 145, 723, 924
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 7 cut(s) 11, 449, 464, 776, 962, 1189, 1277
AhlI ACTAGT 1 cut(s) 743
AjnI CCWGG 1 cut(s) 1174
AjuI GAANNNNNNNTTGG 6 cut(s) 1093, 1125, 1125, 1144, 1157, 1176
AluBI AGCT 7 cut(s) 208, 680, 853, 966, 1025, 1095, 1291
AluI AGCT 7 cut(s) 208, 680, 853, 966, 1025, 1095, 1291
Alw21I GWGCWC 1 cut(s) 1062
Alw26I GTCTC 2 cut(s) 20, 731
AlwI GGATC 1 cut(s) 195
AoxI GGCC 2 cut(s) 842, 846
ApeKI GCWGC 3 cut(s) 549, 863, 1291
ApoI RAATTY 1 cut(s) 998
AspS9I GGNCC 1 cut(s) 847
AsuHPI GGTGA 2 cut(s) 47, 1235
BauI CACGAG 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 1062
BbvI GCAGC 3 cut(s) 561, 875, 1278
BccI CCATC 7 cut(s) 46, 378, 506, 1140, 1165, 1214, 1258
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 1 cut(s) 1176
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 20, 731
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 3 cut(s) 744, 860, 1026
BfmI CTRYAG 1 cut(s) 588
BfuAI ACCTGC 1 cut(s) 1107
BisI GCNGC 5 cut(s) 315, 550, 576, 864, 1292
BlsI GCNGC 5 cut(s) 316, 551, 577, 865, 1293
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 1176
BmgT120I GGNCC 1 cut(s) 847
BmrFI CCNGG 1 cut(s) 1176
BmsI GCATC 5 cut(s) 617, 697, 824, 898, 940
BpuEI CTTGAG 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 374, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse118I RCCGGY 1 cut(s) 844
Bse1I ACTGG 1 cut(s) 1107
Bse3DI GCAATG 3 cut(s) 307, 559, 813
BseBI CCWGG 1 cut(s) 1176
BseDI CCNNGG 2 cut(s) 374, 560
BseGI GGATG 6 cut(s) 370, 517, 889, 1039, 1087, 1151
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 3 cut(s) 307, 559, 813
BseNI ACTGG 1 cut(s) 1107
BseXI GCAGC 3 cut(s) 561, 875, 1278
BseYI CCCAGC 1 cut(s) 849
BsgI GTGCAG 1 cut(s) 1135
Bsh1236I CGCG 1 cut(s) 509
Bsh1285I CGRYCG 1 cut(s) 1242
BshFI GGCC 2 cut(s) 844, 848
BsiEI CGRYCG 1 cut(s) 1242
BsiHKAI GWGCWC 1 cut(s) 1062
BsiSI CCGG 1 cut(s) 845
BslFI GGGAC 2 cut(s) 98, 327
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 20, 731
BsmBI CGTCTC 1 cut(s) 731
BsmFI GGGAC 2 cut(s) 98, 327
BsnI GGCC 2 cut(s) 844, 848
Bsp1286I GDGCHC 1 cut(s) 1062
Bsp1407I TGTACA 1 cut(s) 922
Bsp143I GATC 5 cut(s) 88, 159, 200, 821, 1239
BspACI CCGC 5 cut(s) 241, 314, 509, 575, 874
BspANI GGCC 2 cut(s) 844, 848
BspFNI CGCG 1 cut(s) 509
BspMAI CTGCAG 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 1107
BspPI GGATC 1 cut(s) 195
BsrDI GCAATG 3 cut(s) 307, 559, 813
BsrFI RCCGGY 1 cut(s) 844
BsrGI TGTACA 1 cut(s) 922
BsrI ACTGG 1 cut(s) 1107
BssAI RCCGGY 1 cut(s) 844
BssECI CCNNGG 2 cut(s) 374, 560
BssMI GATC 5 cut(s) 88, 159, 200, 821, 1239
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 1 cut(s) 560
Bst2BI CACGAG 1 cut(s) 768
Bst2UI CCWGG 1 cut(s) 1176
Bst4CI ACNGT 3 cut(s) 169, 754, 1321
Bst6I CTCTTC 3 cut(s) 57, 131, 963
BstAUI TGTACA 1 cut(s) 922
BstC8I GCNNGC 2 cut(s) 846, 1296
BstF5I GGATG 6 cut(s) 370, 517, 889, 1039, 1087, 1151
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 5 cut(s) 91, 162, 203, 824, 1242
BstMAI GTCTC 2 cut(s) 20, 731
BstMBI GATC 5 cut(s) 88, 159, 200, 821, 1239
BstMCI CGRYCG 1 cut(s) 1242
BstMWI GCNNNNNNNGC 4 cut(s) 746, 812, 850, 1122
BstNI CCWGG 1 cut(s) 1176
BstNSI RCATGY 1 cut(s) 874
BstSCI CCNGG 1 cut(s) 1174
BstSFI CTRYAG 1 cut(s) 588
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 3 cut(s) 561, 875, 1278
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 2 cut(s) 844, 848
BtsCI GGATG 6 cut(s) 370, 517, 889, 1039, 1087, 1151
BtsIMutI CAGTG 1 cut(s) 1317
BveI ACCTGC 1 cut(s) 1107
Cac8I GCNNGC 2 cut(s) 846, 1296
Cfr10I RCCGGY 1 cut(s) 844
Cfr13I GGNCC 1 cut(s) 847
Csp6I GTAC 3 cut(s) 144, 722, 923
CviAII CATG 3 cut(s) 658, 871, 1231
CviQI GTAC 3 cut(s) 144, 722, 923
DpnI GATC 5 cut(s) 90, 161, 202, 823, 1241
DpnII GATC 5 cut(s) 88, 159, 200, 821, 1239
DraI TTTAAA 2 cut(s) 1003, 1252
Eam1104I CTCTTC 3 cut(s) 57, 131, 963
EarI CTCTTC 3 cut(s) 57, 131, 963
Eco130I CCWWGG 1 cut(s) 560
Eco32I GATATC 1 cut(s) 1039
EcoRII CCWGG 1 cut(s) 1174
EcoRV GATATC 1 cut(s) 1039
EcoT14I CCWWGG 1 cut(s) 560
ErhI CCWWGG 1 cut(s) 560
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 3 cut(s) 661, 874, 1234
FaqI GGGAC 2 cut(s) 98, 327
FatI CATG 3 cut(s) 657, 870, 1230
FauNDI CATATG 1 cut(s) 1300
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 5 cut(s) 315, 550, 576, 864, 1292
FokI GGATG 6 cut(s) 357, 524, 876, 1046, 1094, 1158
FseI GGCCGGCC 1 cut(s) 848
Fsp4HI GCNGC 5 cut(s) 315, 550, 576, 864, 1292
FspBI CTAG 3 cut(s) 744, 860, 1026
GluI GCNGC 5 cut(s) 315, 550, 576, 864, 1292
GsaI CCCAGC 1 cut(s) 853
HaeIII GGCC 2 cut(s) 844, 848
HapII CCGG 1 cut(s) 845
Hin1II CATG 3 cut(s) 661, 874, 1234
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 3 cut(s) 206, 678, 964
HinfI GANTC 1 cut(s) 410
HpaII CCGG 1 cut(s) 845
HphI GGTGA 2 cut(s) 47, 1235
Hpy166II GTNNAC 2 cut(s) 473, 651
Hpy188I TCNGA 4 cut(s) 196, 229, 378, 527
Hpy188III TCNNGA 4 cut(s) 819, 934, 1189, 1243
Hpy8I GTNNAC 2 cut(s) 473, 651
HpyAV CCTTC 1 cut(s) 1220
HpyCH4III ACNGT 3 cut(s) 169, 754, 1321
HpyCH4IV ACGT 1 cut(s) 724
HpyCH4V TGCA 7 cut(s) 300, 479, 590, 806, 953, 1116, 1298
HpyF10VI GCNNNNNNNGC 4 cut(s) 746, 812, 850, 1122
HpySE526I ACGT 1 cut(s) 724
Hsp92II CATG 3 cut(s) 661, 874, 1234
KroI GCCGGC 1 cut(s) 844
KroNI GCCGGC 1 cut(s) 846
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 5 cut(s) 88, 159, 200, 821, 1239
LmnI GCTCC 3 cut(s) 886, 1022, 1288
Lsp1109I GCAGC 3 cut(s) 561, 875, 1278
LweI GCATC 5 cut(s) 617, 697, 824, 898, 940
MaeI CTAG 3 cut(s) 744, 860, 1026
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 2 cut(s) 685, 1165
MalI GATC 5 cut(s) 90, 161, 202, 823, 1241
MboI GATC 5 cut(s) 88, 159, 200, 821, 1239
MboII GAAGA 5 cut(s) 36, 44, 118, 273, 950
MfeI CAATTG 2 cut(s) 337, 480
MflI RGATCY 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 1062
MluCI AATT 9 cut(s) 30, 337, 389, 480, 998, 1101, 1138, 1197, 1272
MmeI TCCRAC 2 cut(s) 608, 788
MnlI CCTC 5 cut(s) 86, 384, 631, 721, 988
MroNI GCCGGC 1 cut(s) 844
MseI TTAA 8 cut(s) 213, 290, 899, 1002, 1053, 1070, 1251, 1311
MslI CAYNNNNRTG 2 cut(s) 899, 1053
MspA1I CMGCKG 1 cut(s) 853
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 1 cut(s) 1176
MunI CAATTG 2 cut(s) 337, 480
MvaI CCWGG 1 cut(s) 1176
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 4 cut(s) 746, 812, 850, 1122
NaeI GCCGGC 1 cut(s) 846
NdeI CATATG 1 cut(s) 1300
NdeII GATC 5 cut(s) 88, 159, 200, 821, 1239
NgoMIV GCCGGC 1 cut(s) 844
NlaIII CATG 3 cut(s) 661, 874, 1234
NmuCI GTSAC 1 cut(s) 1165
NspI RCATGY 1 cut(s) 874
PdiI GCCGGC 1 cut(s) 846
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 5 cut(s) 316, 551, 577, 865, 1293
Ple19I CGATCG 1 cut(s) 1242
Psp6I CCWGG 1 cut(s) 1174
PspFI CCCAGC 1 cut(s) 849
PspGI CCWGG 1 cut(s) 1174
PspPI GGNCC 1 cut(s) 847
PstI CTGCAG 1 cut(s) 592
PsuI RGATCY 1 cut(s) 200
PvuI CGATCG 1 cut(s) 1242
PvuII CAGCTG 1 cut(s) 853
RigI GGCCGGCC 1 cut(s) 848
RsaI GTAC 3 cut(s) 145, 723, 924
RsaNI GTAC 3 cut(s) 144, 722, 923
RseI CAYNNNNRTG 2 cut(s) 899, 1053
SaqAI TTAA 8 cut(s) 213, 290, 899, 1002, 1053, 1070, 1251, 1311
SatI GCNGC 5 cut(s) 315, 550, 576, 864, 1292
Sau3AI GATC 5 cut(s) 88, 159, 200, 821, 1239
Sau96I GGNCC 1 cut(s) 847
ScaI AGTACT 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 1176
SduI GDGCHC 1 cut(s) 1062
SfaNI GCATC 5 cut(s) 617, 697, 824, 898, 940
SfcI CTRYAG 1 cut(s) 588
SmiMI CAYNNNNRTG 2 cut(s) 899, 1053
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
SpeI ACTAGT 1 cut(s) 743
Sse9I AATT 9 cut(s) 30, 337, 389, 480, 998, 1101, 1138, 1197, 1272
SsiI CCGC 5 cut(s) 241, 314, 509, 575, 874
SspI AATATT 3 cut(s) 267, 718, 1013
SspMI CTAG 3 cut(s) 744, 860, 1026
StyD4I CCNGG 1 cut(s) 1174
StyI CCWWGG 1 cut(s) 560
TaaI ACNGT 3 cut(s) 169, 754, 1321
TaiI ACGT 1 cut(s) 727
TaqI TCGA 2 cut(s) 413, 567
TasI AATT 9 cut(s) 30, 337, 389, 480, 998, 1101, 1138, 1197, 1272
TatI WGTACW 2 cut(s) 143, 922
TauI GCSGC 2 cut(s) 317, 578
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 8 cut(s) 213, 290, 899, 1002, 1053, 1070, 1251, 1311
Tru9I TTAA 8 cut(s) 213, 290, 899, 1002, 1053, 1070, 1251, 1311
TscAI CASTG 1 cut(s) 1324
TseFI GTSAC 1 cut(s) 1165
TseI GCWGC 3 cut(s) 549, 863, 1291
Tsp45I GTSAC 1 cut(s) 1165
TspDTI ATGAA 5 cut(s) 210, 523, 674, 690, 1146
TspRI CASTG 1 cut(s) 1324
XapI RAATTY 1 cut(s) 998
XceI RCATGY 1 cut(s) 874
XspI CTAG 3 cut(s) 744, 860, 1026
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.