RchiOBHm_Chr5g0026741

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000200
Physical Location & Seq
Forward (+)
20763625 .. 20763876
252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30632

Sequence Viewer

Length: 252 bp
ATGATATATATAGAGTGCTATTACTCCACTAGTTGGTGCAGGTTTCCTTTCTATGAAGCCAATTTTGGATGGGGAAAGCCACTGATGAGTATTCCTGCTACTGAAGAACTCAAGAATTTGATTACGTTGACGGATATTAGTTATGGAGATGGCATAGAAGTGCGCTTGACTTTGAAAGAAGAAGACATGGCCATATTTGACAACAATGAGGAGCTGCTAGCATATGCTTCTTTAAATCCCTCTGTCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

83

Amino Acids

9.57

Weight (kDa)

4.15

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 72 2.6e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 175
AhlI ACTAGT 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 214
ApoI RAATTY 1 cut(s) 115
AspLEI GCGC 1 cut(s) 165
AsuNHI GCTAGC 1 cut(s) 217
BalI TGGCCA 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 201
BccI CCATC 2 cut(s) 63, 143
BcuI ACTAGT 1 cut(s) 29
BfaI CTAG 2 cut(s) 30, 218
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 33
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 201
BsgI GTGCAG 1 cut(s) 58
BshFI GGCC 1 cut(s) 191
BslI CCNNNNNNNGG 1 cut(s) 33
BsnI GGCC 1 cut(s) 191
BspANI GGCC 1 cut(s) 191
BspMI ACCTGC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 219
BstF5I GGATG 1 cut(s) 74
BstHHI GCGC 1 cut(s) 165
BstV1I GCAGC 1 cut(s) 201
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 80
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 165
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 59, 79, 191, 214
CviKI_1 RGCY 4 cut(s) 59, 79, 191, 214
DraI TTTAAA 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 123
FaeI CATG 1 cut(s) 190
FatI CATG 1 cut(s) 186
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 2 cut(s) 30, 218
GlaI GCGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 1 cut(s) 191
HhaI GCGC 1 cut(s) 165
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 129
Hpy188III TCNNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 2 cut(s) 25, 108
Lsp1109I GCAGC 1 cut(s) 201
MaeI CTAG 2 cut(s) 30, 218
MaeII ACGT 1 cut(s) 125
MboII GAAGA 3 cut(s) 116, 191, 194
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 2 cut(s) 61, 115
MluNI TGGCCA 1 cut(s) 191
MnlI CCTC 2 cut(s) 202, 250
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 1 cut(s) 158
Msp20I TGGCCA 1 cut(s) 191
NdeI CATATG 1 cut(s) 223
NheI GCTAGC 1 cut(s) 217
NlaIII CATG 1 cut(s) 190
PflMI CCANNNNNTGG 1 cut(s) 33
PkrI GCNGC 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 215
SetI ASST 3 cut(s) 44, 128, 216
SgeI CNNG 7 cut(s) 42, 52, 107, 124, 178, 199, 230
SmiMI CAYNNNNRTG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SpeI ACTAGT 1 cut(s) 29
Sse9I AATT 2 cut(s) 61, 115
SspMI CTAG 2 cut(s) 30, 218
TaiI ACGT 1 cut(s) 128
TasI AATT 2 cut(s) 61, 115
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TscAI CASTG 1 cut(s) 87
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 146
TspRI CASTG 1 cut(s) 87
Van91I CCANNNNNTGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 115
XspI CTAG 2 cut(s) 30, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.