RLG00000006890

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000200
Physical Location & Seq
Reverse (-)
11559035 .. 11560820
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006890

Sequence Viewer

Length: 1005 bp
ATGGTCACCGCAGTGGTCATATGGGCTAAGCCTAAATGGAAGATCGCTGATCTCATATGCACACTAGTATTTTCAATAGCTGTGCTGGCTACAACCATCGGCATGCTGCGGAAAATTGTTGGGGTTCTAATGGAGAGCACTCCAAGAGGGATCGACACCTTAAAGCTTGAGAAAGCTTTGTGTGAGCTGGATGCAGTAGTTGCCTGTCATGAACTGCACATATGGTGCATAACTCCTGGGAAGAATTTACTAACTTGCCATCTAATTGTCAACCCAGGAGCTAATTCTTATAGTGTAATCAAAGACAATTCCTCCATTGACCGCAATGATGATGGAGCGTGGTTCACTGAAGCTCAAGTCAGCTGCCTTCTTGCAGACATTCTCAAAGCAACAGACCACGAGGTGCTAAAACAGTTGCTGCTTATCAATTGTGAAGTCTTTCTCGAAGGCAGGGGATGTGTGCTGCATGTTCAAGCCAACTACTTTAAGTGTGGTGCAATTGGCCTTGGCTTATGTCTTTCTCACAAGATAGCAGATAGAGCCACATTGAGCACATTCATCAGAAGTTGGGCCAATAATGCTTCTGGGATTGGCCAGAAAGTGGATCCTATATTCAACGCCATGTTAATAACCCCACCAAGAGATATCTCGATGACTCCACCAGATCTTGAAAATCTTAAGATCAGAGAACACAAATCTGCAACAAAGAGGTTTGTATTCAATGGCTCAAAGATTGCTGCTCTTTGGGCCAAAGCACCTTCTGTGAGTGTCAAACAACCGAAAAAAGTGGAGAGGGTAGCAGCACTCATCTGGAAATGTGCAATGAAGGCTTCAAGGACAAATTTCGGATCCTCATCTAGGCTATCGTCCCTGTACCAAAATGTGAACATTCGAAACAGAATAGTCCCTCCCCTACCAAAGAACTCTGTTGGGAAGTTTGTTGGGTCTTTATTGCGAGGACAGAGGACACATAGGAAGAGTTACAGGGCTTGGTTACTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

335

Amino Acids

36.9

Weight (kDa)

9.69

Isoelectric Point (pI)

21.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 104 - 316 1.2e-36 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 601
AciI CCGC 3 cut(s) 9, 109, 322
AclWI GGATC 5 cut(s) 158, 599, 612, 843, 856
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 2 cut(s) 244, 841
AcuI CTGAAG 1 cut(s) 369
AdeI CACNNNGTG 1 cut(s) 403
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 2 cut(s) 601, 858
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 6 cut(s) 75, 473, 616, 671, 721, 834
AhlI ACTAGT 1 cut(s) 64
AjnI CCWGG 2 cut(s) 235, 274
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 7 cut(s) 80, 166, 176, 187, 281, 353, 363
AluI AGCT 7 cut(s) 80, 166, 176, 187, 281, 353, 363
Alw21I GWGCWC 2 cut(s) 140, 554
AlwI GGATC 5 cut(s) 158, 599, 612, 843, 856
AlwNI CAGNNNCTG 1 cut(s) 418
AoxI GGCC 4 cut(s) 502, 570, 592, 747
ApeKI GCWGC 6 cut(s) 106, 363, 418, 463, 737, 800
ApoI RAATTY 2 cut(s) 244, 841
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 2 cut(s) 570, 747
AsuII TTCGAA 1 cut(s) 892
BalI TGGCCA 1 cut(s) 594
BamHI GGATCC 2 cut(s) 604, 848
BauI CACGAG 1 cut(s) 398
Bbv12I GWGCWC 2 cut(s) 140, 554
BbvI GCAGC 6 cut(s) 93, 350, 405, 450, 724, 812
BccI CCATC 3 cut(s) 104, 267, 326
BciT130I CCWGG 2 cut(s) 237, 276
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 2 cut(s) 65, 858
BfrI CTTAAG 1 cut(s) 677
BglII AGATCT 1 cut(s) 664
BisI GCNGC 6 cut(s) 107, 364, 419, 464, 738, 801
BlpI GCTNAGC 1 cut(s) 27
BlsI GCNGC 6 cut(s) 108, 365, 420, 465, 739, 802
Bme1390I CCNGG 2 cut(s) 237, 276
BmgT120I GGNCC 2 cut(s) 570, 747
BmiI GGNNCC 2 cut(s) 606, 850
BmrFI CCNGG 2 cut(s) 237, 276
BmsI GCATC 1 cut(s) 181
Bpu1102I GCTNAGC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 892
BpuEI CTTGAG 2 cut(s) 188, 339
BsaBI GATNNNNATC 1 cut(s) 853
BsaJI CCNNGG 3 cut(s) 236, 274, 505
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 601, 858
Bse3DI GCAATG 2 cut(s) 331, 828
Bse8I GATNNNNATC 1 cut(s) 853
BseBI CCWGG 2 cut(s) 237, 276
BseDI CCNNGG 3 cut(s) 236, 274, 505
BseGI GGATG 2 cut(s) 196, 461
BseJI GATNNNNATC 1 cut(s) 853
BseLI CCNNNNNNNGG 2 cut(s) 601, 858
BseMI GCAATG 2 cut(s) 331, 828
BseXI GCAGC 6 cut(s) 93, 350, 405, 450, 724, 812
BsgI GTGCAG 1 cut(s) 200
BshFI GGCC 4 cut(s) 504, 572, 594, 749
BsiHKAI GWGCWC 2 cut(s) 140, 554
BslFI GGGAC 2 cut(s) 853, 890
BslI CCNNNNNNNGG 2 cut(s) 601, 858
BsmFI GGGAC 2 cut(s) 853, 890
BsnI GGCC 4 cut(s) 504, 572, 594, 749
Bsp119I TTCGAA 1 cut(s) 892
Bsp1286I GDGCHC 2 cut(s) 140, 554
Bsp143I GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
Bsp1720I GCTNAGC 1 cut(s) 27
BspACI CCGC 3 cut(s) 9, 109, 322
BspANI GGCC 4 cut(s) 504, 572, 594, 749
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 2 cut(s) 606, 850
BspPI GGATC 5 cut(s) 158, 599, 612, 843, 856
BspT104I TTCGAA 1 cut(s) 892
BspTI CTTAAG 1 cut(s) 677
BsrDI GCAATG 2 cut(s) 331, 828
BssECI CCNNGG 3 cut(s) 236, 274, 505
BssMI GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
BssSI CACGAG 1 cut(s) 398
BssT1I CCWWGG 1 cut(s) 505
Bst2BI CACGAG 1 cut(s) 398
Bst2UI CCWGG 2 cut(s) 237, 276
Bst4CI ACNGT 1 cut(s) 414
Bst6I CTCTTC 1 cut(s) 971
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 87, 104
BstDEI CTNAG 1 cut(s) 27
BstEII GGTNACC 1 cut(s) 4
BstENI CCTNNNNNAGG 1 cut(s) 856
BstF5I GGATG 2 cut(s) 196, 461
BstKTI GATC 7 cut(s) 45, 52, 153, 607, 667, 684, 851
BstMBI GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
BstMWI GCNNNNNNNGC 6 cut(s) 86, 200, 539, 578, 746, 827
BstNI CCWGG 2 cut(s) 237, 276
BstNSI RCATGY 2 cut(s) 106, 470
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 235, 274
BstV1I GCAGC 6 cut(s) 93, 350, 405, 450, 724, 812
BstX2I RGATCY 3 cut(s) 604, 664, 848
BstYI RGATCY 3 cut(s) 604, 664, 848
BsuRI GGCC 4 cut(s) 504, 572, 594, 749
BtsCI GGATG 2 cut(s) 196, 461
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 18, 345
Cac8I GCNNGC 2 cut(s) 87, 104
CaiI CAGNNNCTG 1 cut(s) 418
CciI TCATGA 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 570, 747
Csp6I GTAC 1 cut(s) 874
CviAII CATG 4 cut(s) 103, 209, 467, 622
CviQI GTAC 1 cut(s) 874
DdeI CTNAG 1 cut(s) 27
DpnI GATC 7 cut(s) 44, 51, 152, 606, 666, 683, 850
DpnII GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
DraIII CACNNNGTG 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 971
EarI CTCTTC 1 cut(s) 971
Eco130I CCWWGG 1 cut(s) 505
Eco32I GATATC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 369
Eco91I GGTNACC 1 cut(s) 4
EcoNI CCTNNNNNAGG 1 cut(s) 856
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 235, 274
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 505
ErhI CCWWGG 1 cut(s) 505
FaeI CATG 4 cut(s) 106, 212, 470, 625
FaqI GGGAC 2 cut(s) 853, 890
FatI CATG 4 cut(s) 102, 208, 466, 621
FauNDI CATATG 3 cut(s) 20, 56, 221
Fnu4HI GCNGC 6 cut(s) 107, 364, 419, 464, 738, 801
FokI GGATG 2 cut(s) 203, 468
Fsp4HI GCNGC 6 cut(s) 107, 364, 419, 464, 738, 801
FspBI CTAG 2 cut(s) 65, 858
GluI GCNGC 6 cut(s) 107, 364, 419, 464, 738, 801
HaeIII GGCC 4 cut(s) 504, 572, 594, 749
Hin1II CATG 4 cut(s) 106, 212, 470, 625
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 164, 174
HinfI GANTC 1 cut(s) 655
Hpy166II GTNNAC 3 cut(s) 271, 345, 886
Hpy188I TCNGA 3 cut(s) 563, 686, 848
Hpy188III TCNNGA 5 cut(s) 209, 443, 649, 668, 811
Hpy8I GTNNAC 3 cut(s) 271, 345, 886
HpyAV CCTTC 4 cut(s) 377, 440, 768, 820
HpyCH4III ACNGT 1 cut(s) 414
HpyCH4V TGCA 9 cut(s) 60, 194, 217, 228, 374, 466, 497, 701, 821
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 200, 539, 578, 746, 827
HpyF3I CTNAG 1 cut(s) 27
Hsp92II CATG 4 cut(s) 106, 212, 470, 625
Kzo9I GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
LmnI GCTCC 2 cut(s) 278, 335
Lsp1109I GCAGC 6 cut(s) 93, 350, 405, 450, 724, 812
LweI GCATC 1 cut(s) 181
MaeI CTAG 2 cut(s) 65, 858
MaeIII GTNAC 3 cut(s) 4, 980, 993
MalI GATC 7 cut(s) 44, 51, 152, 606, 666, 683, 850
MboI GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
MboII GAAGA 3 cut(s) 52, 253, 988
MfeI CAATTG 2 cut(s) 427, 498
MflI RGATCY 3 cut(s) 604, 664, 848
MhlI GDGCHC 2 cut(s) 140, 554
MlsI TGGCCA 1 cut(s) 594
MluCI AATT 9 cut(s) 114, 244, 264, 283, 307, 427, 498, 841, 1000
MluNI TGGCCA 1 cut(s) 594
MlyI GAGTC 1 cut(s) 649
MnlI CCTC 9 cut(s) 140, 322, 394, 702, 786, 862, 918, 950, 957
Mox20I TGGCCA 1 cut(s) 594
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 594
MseI TTAA 5 cut(s) 161, 486, 626, 678, 1003
MslI CAYNNNNRTG 2 cut(s) 11, 101
Msp20I TGGCCA 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 363
MspCI CTTAAG 1 cut(s) 677
MspR9I CCNGG 2 cut(s) 237, 276
MunI CAATTG 2 cut(s) 427, 498
MvaI CCWGG 2 cut(s) 237, 276
MwoI GCNNNNNNNGC 6 cut(s) 86, 200, 539, 578, 746, 827
NdeI CATATG 3 cut(s) 20, 56, 221
NdeII GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
NlaIII CATG 4 cut(s) 106, 212, 470, 625
NlaIV GGNNCC 2 cut(s) 606, 850
NmuCI GTSAC 1 cut(s) 4
NspI RCATGY 2 cut(s) 106, 470
NspV TTCGAA 1 cut(s) 892
OliI CACNNNNGTG 1 cut(s) 11
PaeI GCATGC 1 cut(s) 106
PagI TCATGA 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 438
PflMI CCANNNNNTGG 1 cut(s) 601
PkrI GCNGC 6 cut(s) 108, 365, 420, 465, 739, 802
PleI GAGTC 1 cut(s) 649
PpsI GAGTC 1 cut(s) 649
Psp6I CCWGG 2 cut(s) 235, 274
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 235, 274
PspN4I GGNNCC 2 cut(s) 606, 850
PspPI GGNCC 2 cut(s) 570, 747
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 3 cut(s) 604, 664, 848
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
RseI CAYNNNNRTG 2 cut(s) 11, 101
SaqAI TTAA 5 cut(s) 161, 486, 626, 678, 1003
SatI GCNGC 6 cut(s) 107, 364, 419, 464, 738, 801
Sau3AI GATC 7 cut(s) 42, 49, 150, 604, 664, 681, 848
Sau96I GGNCC 2 cut(s) 570, 747
SchI GAGTC 1 cut(s) 649
ScrFI CCNGG 2 cut(s) 237, 276
SduI GDGCHC 2 cut(s) 140, 554
SfaNI GCATC 1 cut(s) 181
SfuI TTCGAA 1 cut(s) 892
SmiMI CAYNNNNRTG 2 cut(s) 11, 101
SmlI CTYRAG 3 cut(s) 167, 354, 677
SmoI CTYRAG 3 cut(s) 167, 354, 677
SpeI ACTAGT 1 cut(s) 64
SphI GCATGC 1 cut(s) 106
Sse9I AATT 9 cut(s) 114, 244, 264, 283, 307, 427, 498, 841, 1000
SsiI CCGC 3 cut(s) 9, 109, 322
SspMI CTAG 2 cut(s) 65, 858
StyD4I CCNGG 2 cut(s) 235, 274
StyI CCWWGG 1 cut(s) 505
TaaI ACNGT 1 cut(s) 414
TaqI TCGA 4 cut(s) 153, 444, 650, 892
TasI AATT 9 cut(s) 114, 244, 264, 283, 307, 427, 498, 841, 1000
Tru1I TTAA 5 cut(s) 161, 486, 626, 678, 1003
Tru9I TTAA 5 cut(s) 161, 486, 626, 678, 1003
TscAI CASTG 2 cut(s) 18, 352
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 6 cut(s) 106, 363, 418, 463, 737, 800
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 225, 547, 839
TspRI CASTG 2 cut(s) 18, 352
Van91I CCANNNNNTGG 1 cut(s) 601
Vha464I CTTAAG 1 cut(s) 677
XagI CCTNNNNNAGG 1 cut(s) 856
XapI RAATTY 2 cut(s) 244, 841
XceI RCATGY 2 cut(s) 106, 470
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 2 cut(s) 65, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.