Rh4DG194300

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000200
Physical Location & Seq
Reverse (-)
38043927 .. 38044697
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG194300.1

Sequence Viewer

Length: 771 bp
ATGGGCCTTGGCACTGATGTAGTAGCTCTTCCAACTGCAGAATTTGGTGTTGCAGCATCTGTTTACCCACCACAAGATTTATCCATCAAGTCATTGCAAACTTCTGGGGAATATGTTTATGAAGATTGTGTAAAAAGAAGATTTGTTTTTGATGCCTCAAATATTCTACGTCTCAAGTCTAAAGCCGCTAGTGCCATCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTCAGCGCTTATTTGGAAATGTGCAATGGACGTATCAAGATCAAACTTGGGTGTTACAAGGCCAGCAATGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGGGGCATCCCACTTTAATGGGAAATCTTTTAGGATATGTCCCAACAAAGACACAAGAAAGTGAGGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAGGCATTGAGAAATTTAAAGTGAATTATGGTAATGGAGTTAGCGGAGATGAGATCTGCCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATATAAATAACTATACATGTAGCAGTTGGTGTAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCATGGGTCACTATGCCAGGTATGCCAATCAAGAATGTAATTATATTGATTGATGCAAAAGATGGTGAAGGCGTAGAAGCGATATTGAGTTTTAAAGAAGACGACATGGCTATAATTGAAACCAATAAGGAGCTGCTTACATATGCATCTCTCAATCCTATTGCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

256

Amino Acids

28.15

Weight (kDa)

5.51

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 25 - 245 4e-33 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 186, 319, 471
AcsI RAATTY 2 cut(s) 41, 440
AfeI AGCGCT 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 542
AgsI TTSAA 4 cut(s) 221, 404, 496, 719
AjnI CCWGG 1 cut(s) 616
AjuI GAANNNNNNNTTGG 2 cut(s) 567, 599
AluBI AGCT 3 cut(s) 26, 408, 733
AluI AGCT 3 cut(s) 26, 408, 733
Alw26I GTCTC 1 cut(s) 176
AlwNI CAGNNNCTG 1 cut(s) 59
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 2 cut(s) 4, 287
ApeKI GCWGC 3 cut(s) 53, 308, 733
ApoI RAATTY 2 cut(s) 41, 440
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 677
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 705
BbvI GCAGC 3 cut(s) 65, 320, 720
BccI CCATC 5 cut(s) 92, 203, 582, 607, 656
BciT130I CCWGG 1 cut(s) 618
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 189, 305
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 1 cut(s) 236
BglII AGATCT 1 cut(s) 480
BisI GCNGC 4 cut(s) 54, 186, 309, 734
BlsI GCNGC 4 cut(s) 55, 187, 310, 735
Bme1390I CCNGG 1 cut(s) 618
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 618
BmsI GCATC 5 cut(s) 65, 142, 343, 643, 755
BpiI GAAGAC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 7
Bse3DI GCAATG 3 cut(s) 92, 258, 300
BseBI CCWGG 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 334, 593
BseMI GCAATG 3 cut(s) 92, 258, 300
BseXI GCAGC 3 cut(s) 65, 320, 720
BshFI GGCC 2 cut(s) 6, 289
BslFI GGGAC 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 353
BsnI GGCC 2 cut(s) 6, 289
Bsp143I GATC 2 cut(s) 266, 480
BspACI CCGC 3 cut(s) 186, 319, 471
BspANI GGCC 2 cut(s) 6, 289
BspMAI CTGCAG 1 cut(s) 40
BspQI GCTCTTC 1 cut(s) 33
BsrDI GCAATG 3 cut(s) 92, 258, 300
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 2 cut(s) 266, 480
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 7
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 618
Bst6I CTCTTC 2 cut(s) 33, 405
BstC8I GCNNGC 1 cut(s) 291
BstF5I GGATG 2 cut(s) 334, 593
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 2 cut(s) 269, 483
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 2 cut(s) 266, 480
BstMWI GCNNNNNNNGC 3 cut(s) 191, 295, 622
BstNI CCWGG 1 cut(s) 618
BstNSI RCATGY 2 cut(s) 319, 546
BstSCI CCNGG 1 cut(s) 616
BstSFI CTRYAG 1 cut(s) 36
BstV1I GCAGC 3 cut(s) 65, 320, 720
BstV2I GAAGAC 1 cut(s) 705
BstX2I RGATCY 1 cut(s) 480
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 2 cut(s) 6, 289
BtsCI GGATG 2 cut(s) 334, 593
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 291
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 5 cut(s) 316, 503, 543, 603, 706
DpnI GATC 2 cut(s) 268, 482
DpnII GATC 2 cut(s) 266, 480
DraI TTTAAA 2 cut(s) 445, 694
Eam1104I CTCTTC 2 cut(s) 33, 405
EarI CTCTTC 2 cut(s) 33, 405
Eco130I CCWWGG 1 cut(s) 7
Eco47III AGCGCT 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 5 cut(s) 319, 506, 546, 606, 709
FaqI GGGAC 1 cut(s) 353
FatI CATG 5 cut(s) 315, 502, 542, 602, 705
FauNDI CATATG 1 cut(s) 742
Fnu4HI GCNGC 4 cut(s) 54, 186, 309, 734
FokI GGATG 2 cut(s) 321, 600
Fsp4HI GCNGC 4 cut(s) 54, 186, 309, 734
FspBI CTAG 2 cut(s) 189, 305
GlaI GCGC 1 cut(s) 234
GluI GCNGC 4 cut(s) 54, 186, 309, 734
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 2 cut(s) 6, 289
HhaI GCGC 1 cut(s) 235
Hin1II CATG 5 cut(s) 319, 506, 546, 606, 709
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 406
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 264, 631
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 422, 662
HpyCH4IV ACGT 2 cut(s) 169, 258
HpyCH4V TGCA 6 cut(s) 38, 53, 97, 251, 656, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 295, 622
HpySE526I ACGT 2 cut(s) 169, 258
Hsp92II CATG 5 cut(s) 319, 506, 546, 606, 709
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 2 cut(s) 266, 480
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 730
LpnPI CCDG 4 cut(s) 90, 303, 603, 630
Lsp1109I GCAGC 3 cut(s) 65, 320, 720
LweI GCATC 5 cut(s) 65, 142, 343, 643, 755
MaeI CTAG 2 cut(s) 189, 305
MaeII ACGT 2 cut(s) 169, 258
MaeIII GTNAC 2 cut(s) 280, 607
MalI GATC 2 cut(s) 268, 482
MboI GATC 2 cut(s) 266, 480
MboII GAAGA 6 cut(s) 20, 134, 150, 392, 518, 710
MflI RGATCY 1 cut(s) 480
MluCI AATT 6 cut(s) 41, 440, 451, 580, 639, 714
MmeI TCCRAC 2 cut(s) 56, 233
MnlI CCTC 2 cut(s) 166, 385
Mph1103I ATGCAT 1 cut(s) 748
MseI TTAA 5 cut(s) 344, 444, 512, 693, 769
MslI CAYNNNNRTG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 618
MvaI CCWGG 1 cut(s) 618
MwoI GCNNNNNNNGC 3 cut(s) 191, 295, 622
NdeI CATATG 1 cut(s) 742
NdeII GATC 2 cut(s) 266, 480
NlaIII CATG 5 cut(s) 319, 506, 546, 606, 709
NmuCI GTSAC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 2 cut(s) 319, 546
PciI ACATGT 1 cut(s) 542
PciSI GCTCTTC 1 cut(s) 33
PkrI GCNGC 4 cut(s) 55, 187, 310, 735
PscI ACATGT 1 cut(s) 542
Psp6I CCWGG 1 cut(s) 616
PspGI CCWGG 1 cut(s) 616
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 40
PstNI CAGNNNCTG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 480
RseI CAYNNNNRTG 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 5 cut(s) 344, 444, 512, 693, 769
SatI GCNGC 4 cut(s) 54, 186, 309, 734
Sau3AI GATC 2 cut(s) 266, 480
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 618
SetI ASST 7 cut(s) 28, 172, 261, 410, 563, 622, 735
SfaNI GCATC 5 cut(s) 65, 142, 343, 643, 755
SfcI CTRYAG 1 cut(s) 36
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 6 cut(s) 41, 440, 451, 580, 639, 714
SsiI CCGC 3 cut(s) 186, 319, 471
SspI AATATT 1 cut(s) 163
SspMI CTAG 2 cut(s) 189, 305
StyD4I CCNGG 1 cut(s) 616
StyI CCWWGG 1 cut(s) 7
TaiI ACGT 2 cut(s) 172, 261
TasI AATT 6 cut(s) 41, 440, 451, 580, 639, 714
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 5 cut(s) 344, 444, 512, 693, 769
Tru9I TTAA 5 cut(s) 344, 444, 512, 693, 769
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 3 cut(s) 53, 308, 733
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 135, 519, 588
TspRI CASTG 1 cut(s) 19
XapI RAATTY 2 cut(s) 41, 440
XceI RCATGY 2 cut(s) 319, 546
XspI CTAG 2 cut(s) 189, 305
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.