RchiOBHm_Chr4g0391841

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000200
Physical Location & Seq
Reverse (-)
7245357 .. 7245917
561 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36463

Sequence Viewer

Length: 558 bp
ATGTGTTCAAAAATGAGGGTTGAAGTGATCAACAAGGAAACAATTACACCATCATCTCCTACTCCTCACCACCTTACAACTTCCAACCTTTCTGTTTTTGATCAGTTTTTACCGGACTTGTATGTCCCCCTACTTCTCTTCTATCCCAACAATAGTACTACTAATCAAAAGGGCAATACAGTTGATCACCACTACTCATTGATTACCGAAAGATCCAAGCTTCTGAAAACTTCATTATCTAAAGCCCTCAGCCGCTTCTATCCTTTCGCAGGAAGAATATTTAGCCACAACAACATTCTTTCAATCTGTTGCAATGACCATGGTGAGGCATTTATCCAAACCAGTGTCAATTGTCCCATATCAAAGGTTTTGGAAAAGCCCCATGATGGAATAGTAAATCAATTACTTCCAAATGGCATAGAATCAACATTTGAAAGCACAGGCTACCTCCTACTAGTCCAAGCCAACTTTTTTGAATGTGGCGGAATTGCAATTGGGATTAGCATTTCACATAAGATCGCAGACGGCTTCACACTCGGAACATTCATATGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

185

Amino Acids

20.45

Weight (kDa)

6.69

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 185 4.2e-38 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AciI CCGC 2 cut(s) 253, 483
AclWI GGATC 1 cut(s) 207
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 3 cut(s) 269, 325, 386
AgsI TTSAA 5 cut(s) 9, 23, 303, 434, 476
AhlI ACTAGT 1 cut(s) 454
AluBI AGCT 2 cut(s) 220, 555
AluI AGCT 2 cut(s) 220, 555
AlwI GGATC 1 cut(s) 207
AsuHPI GGTGA 3 cut(s) 59, 179, 335
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 2 cut(s) 58, 380
BceAI ACGGC 1 cut(s) 541
BclI TGATCA 3 cut(s) 27, 100, 184
BcuI ACTAGT 1 cut(s) 454
BfaI CTAG 2 cut(s) 455, 556
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
BmcAI AGTACT 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 319
BsaWI WCCGGW 1 cut(s) 112
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 325, 386
Bse1I ACTGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 319
BseLI CCNNNNNNNGG 3 cut(s) 269, 325, 386
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 342
BseRI GAGGAG 1 cut(s) 54
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 110, 339
BslI CCNNNNNNNGG 3 cut(s) 269, 325, 386
BsmFI GGGAC 2 cut(s) 110, 339
Bsp143I GATC 5 cut(s) 27, 100, 184, 212, 516
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 2 cut(s) 253, 483
BspCNI CTCAG 1 cut(s) 261
BspPI GGATC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 319
BsrI ACTGG 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 5 cut(s) 27, 100, 184, 212, 516
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 143
BstDEI CTNAG 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 319
BstENI CCTNNNNNAGG 1 cut(s) 267
BstKTI GATC 5 cut(s) 30, 103, 187, 215, 519
BstMBI GATC 5 cut(s) 27, 100, 184, 212, 516
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 349
Csp6I GTAC 1 cut(s) 156
CviAII CATG 2 cut(s) 320, 383
CviJI RGCY 9 cut(s) 220, 245, 252, 285, 379, 444, 464, 528, 555
CviKI_1 RGCY 9 cut(s) 220, 245, 252, 285, 379, 444, 464, 528, 555
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 248
DpnI GATC 5 cut(s) 29, 102, 186, 214, 518
DpnII GATC 5 cut(s) 27, 100, 184, 212, 516
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 319
EcoNI CCTNNNNNAGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 323, 386
FaiI YATR 8 cut(s) 123, 321, 359, 384, 419, 513, 548, 550
FaqI GGGAC 2 cut(s) 110, 339
FatI CATG 2 cut(s) 319, 382
FauNDI CATATG 1 cut(s) 548
FbaI TGATCA 3 cut(s) 27, 100, 184
Fnu4HI GCNGC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 2 cut(s) 455, 556
GluI GCNGC 1 cut(s) 253
HapII CCGG 1 cut(s) 113
Hin1II CATG 2 cut(s) 323, 386
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 1 cut(s) 422
HpaII CCGG 1 cut(s) 113
HphI GGTGA 3 cut(s) 59, 179, 335
Hpy188I TCNGA 2 cut(s) 225, 539
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 2 cut(s) 312, 491
HpyF3I CTNAG 1 cut(s) 248
Hsp92II CATG 2 cut(s) 323, 386
Ksp22I TGATCA 3 cut(s) 27, 100, 184
Kzo9I GATC 5 cut(s) 27, 100, 184, 212, 516
LpnPI CCDG 4 cut(s) 126, 255, 355, 426
MaeI CTAG 2 cut(s) 455, 556
MalI GATC 5 cut(s) 29, 102, 186, 214, 518
MboI GATC 5 cut(s) 27, 100, 184, 212, 516
MboII GAAGA 2 cut(s) 130, 285
MfeI CAATTG 2 cut(s) 349, 492
MflI RGATCY 1 cut(s) 212
MluCI AATT 5 cut(s) 42, 349, 401, 486, 492
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 5 cut(s) 9, 75, 257, 319, 458
MslI CAYNNNNRTG 1 cut(s) 547
MspI CCGG 1 cut(s) 113
MunI CAATTG 2 cut(s) 349, 492
NcoI CCATGG 1 cut(s) 319
NdeI CATATG 1 cut(s) 548
NdeII GATC 5 cut(s) 27, 100, 184, 212, 516
NlaIII CATG 2 cut(s) 323, 386
PfeI GAWTC 1 cut(s) 422
PkrI GCNGC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 547
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 5 cut(s) 27, 100, 184, 212, 516
ScaI AGTACT 1 cut(s) 157
SetI ASST 6 cut(s) 75, 90, 222, 369, 450, 557
SmiMI CAYNNNNRTG 1 cut(s) 547
SpeI ACTAGT 1 cut(s) 454
Sse9I AATT 5 cut(s) 42, 349, 401, 486, 492
SsiI CCGC 2 cut(s) 253, 483
SspI AATATT 1 cut(s) 279
SspMI CTAG 2 cut(s) 455, 556
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 181
TasI AATT 5 cut(s) 42, 349, 401, 486, 492
TatI WGTACW 1 cut(s) 155
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 1 cut(s) 422
TscAI CASTG 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 222, 535
TspRI CASTG 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 267
XspI CTAG 2 cut(s) 455, 556
ZrmI AGTACT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.