Rroxscaffold_1G00052810

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000200
Physical Location & Seq
Reverse (-)
73559551 .. 73560034
484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052810.1

Sequence Viewer

Length: 432 bp
ATGGATGCATCAAGATCAAACTCGGGTTCTATTAGGCCATCAATGTTGTGTCAATGGGTGAATATGTGGAAAACAGAACAAAGTGAAGCAAATGATCTTCAAAGCTTGGTTGCTATACTCAGGGAAGGCATTGAGGAGTTTAAAGCCAAATATGGTAATGGAGTTAGCAGCGAGGGTGTACGTGAACTTTACAACGAGCATCGGAACCTGGTGGGAAAGAATGGTATAGACATCTATAATTGCAGCAGTTGGTGCCCGTTTTCCTTCTACAACGCCGATTTTGGATGGGGAAAGCCATCGTGGGTGAGTACCCCAAGAGATGGTGATGGCATGGAAGTGTCCTTAAGTTTCAAAGCGGAAGACATGGCCCTAAATATTGAAACCAATCAGGAGCTGCTTGCATATGCTTCTCTTAGTCCTTGTGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

143

Amino Acids

15.93

Weight (kDa)

4.66

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 31 - 105 3.2e-08 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 320
AciI CCGC 1 cut(s) 356
AfaI GTAC 2 cut(s) 180, 310
AfiI CCNNNNNNNGG 1 cut(s) 320
AflII CTTAAG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 101, 352, 380
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 105, 394
AluI AGCT 2 cut(s) 105, 394
AlwNI CAGNNNCTG 1 cut(s) 394
Ama87I CYCGRG 1 cut(s) 22
AoxI GGCC 2 cut(s) 35, 366
ApeKI GCWGC 3 cut(s) 168, 243, 394
AspS9I GGNCC 1 cut(s) 367
AsuHPI GGTGA 3 cut(s) 70, 316, 335
AvaI CYCGRG 1 cut(s) 22
BaeGI GKGCMC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 180, 255, 381
BccI CCATC 5 cut(s) 46, 279, 304, 314, 320
BciT130I CCWGG 1 cut(s) 209
BfrI CTTAAG 1 cut(s) 343
BisI GCNGC 3 cut(s) 169, 244, 395
BlsI GCNGC 3 cut(s) 170, 245, 396
Bme1390I CCNGG 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 367
BmiI GGNNCC 2 cut(s) 206, 254
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 17, 208
BpiI GAAGAC 1 cut(s) 366
BsaAI YACGTR 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 209
BseGI GGATG 2 cut(s) 10, 290
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMII CTCAG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 3 cut(s) 180, 255, 381
BshFI GGCC 2 cut(s) 37, 368
BshNI GGYRCC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 320
BsnI GGCC 2 cut(s) 37, 368
BsoBI CYCGRG 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 2 cut(s) 14, 94
BspACI CCGC 1 cut(s) 356
BspANI GGCC 2 cut(s) 37, 368
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 206, 254
BspT107I GGYRCC 1 cut(s) 252
BspTI CTTAAG 1 cut(s) 343
BssMI GATC 2 cut(s) 14, 94
Bst2UI CCWGG 1 cut(s) 209
BstAFI CTTAAG 1 cut(s) 343
BstAPI GCANNNNNTGC 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 119, 413, 429
BstF5I GGATG 2 cut(s) 10, 290
BstKTI GATC 2 cut(s) 17, 97
BstMBI GATC 2 cut(s) 14, 94
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 257
BstV1I GCAGC 3 cut(s) 180, 255, 381
BstV2I GAAGAC 1 cut(s) 366
BsuRI GGCC 2 cut(s) 37, 368
BtsCI GGATG 2 cut(s) 10, 290
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 394
Cfr13I GGNCC 1 cut(s) 367
CsiI ACCWGGT 1 cut(s) 207
Csp6I GTAC 2 cut(s) 179, 309
CviAII CATG 2 cut(s) 331, 364
CviJI RGCY 6 cut(s) 37, 105, 146, 295, 368, 394
CviKI_1 RGCY 6 cut(s) 37, 105, 146, 295, 368, 394
CviQI GTAC 2 cut(s) 179, 309
DdeI CTNAG 3 cut(s) 119, 413, 429
DpnI GATC 2 cut(s) 16, 96
DpnII GATC 2 cut(s) 14, 94
DraI TTTAAA 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 10
FaeI CATG 2 cut(s) 334, 367
FaiI YATR 9 cut(s) 65, 116, 153, 227, 237, 332, 365, 403, 405
FatI CATG 2 cut(s) 330, 363
FauNDI CATATG 1 cut(s) 403
Fnu4HI GCNGC 3 cut(s) 169, 244, 395
FokI GGATG 2 cut(s) 17, 297
Fsp4HI GCNGC 3 cut(s) 169, 244, 395
GluI GCNGC 3 cut(s) 169, 244, 395
HaeIII GGCC 2 cut(s) 37, 368
Hin1II CATG 2 cut(s) 334, 367
HindIII AAGCTT 1 cut(s) 103
HphI GGTGA 3 cut(s) 70, 316, 335
Hpy166II GTNNAC 2 cut(s) 179, 185
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 2 cut(s) 12, 389
Hpy8I GTNNAC 2 cut(s) 179, 185
HpyAV CCTTC 2 cut(s) 119, 274
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 3 cut(s) 8, 243, 401
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpyF3I CTNAG 3 cut(s) 119, 413, 429
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 2 cut(s) 334, 367
Kzo9I GATC 2 cut(s) 14, 94
LmnI GCTCC 1 cut(s) 391
LpnPI CCDG 4 cut(s) 106, 194, 221, 374
Lsp1109I GCAGC 3 cut(s) 180, 255, 381
LweI GCATC 2 cut(s) 17, 208
MabI ACCWGGT 1 cut(s) 207
MaeII ACGT 1 cut(s) 181
MalI GATC 2 cut(s) 16, 96
MboI GATC 2 cut(s) 14, 94
MboII GAAGA 2 cut(s) 89, 371
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 1 cut(s) 238
MnlI CCTC 2 cut(s) 127, 166
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 2 cut(s) 141, 344
MslI CAYNNNNRTG 1 cut(s) 335
MspCI CTTAAG 1 cut(s) 343
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeI CATATG 1 cut(s) 403
NdeII GATC 2 cut(s) 14, 94
NlaIII CATG 2 cut(s) 334, 367
NlaIV GGNNCC 2 cut(s) 206, 254
NsiI ATGCAT 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 320
PkrI GCNGC 3 cut(s) 170, 245, 396
Ppu21I YACGTR 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 206, 254
PspPI GGNCC 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 394
RsaI GTAC 2 cut(s) 180, 310
RsaNI GTAC 2 cut(s) 179, 309
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 2 cut(s) 141, 344
SatI GCNGC 3 cut(s) 169, 244, 395
Sau3AI GATC 2 cut(s) 14, 94
Sau96I GGNCC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 257
SetI ASST 4 cut(s) 107, 184, 210, 396
SexAI ACCWGGT 1 cut(s) 207
SfaNI GCATC 2 cut(s) 17, 208
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 1 cut(s) 238
SsiI CCGC 1 cut(s) 356
SspI AATATT 1 cut(s) 376
StyD4I CCNGG 1 cut(s) 207
TaiI ACGT 1 cut(s) 184
TasI AATT 1 cut(s) 238
Tru1I TTAA 2 cut(s) 141, 344
Tru9I TTAA 2 cut(s) 141, 344
TseI GCWGC 3 cut(s) 168, 243, 394
Van91I CCANNNNNTGG 1 cut(s) 320
Vha464I CTTAAG 1 cut(s) 343
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.