Rh5AG188800

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000200
Physical Location & Seq
Forward (+)
21702953 .. 21703816
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG188800.1

Sequence Viewer

Length: 864 bp
ATGGCAATCGGAGTCAACATCTCACATAAGGTCGGTGATGCTTTTACATTCAGCAAATTCATTAATAGCTGGGCTGCAGTTTCCTTTGGCTCCAGTGCTAGTGATCATATAGCGGTTCCAGCTGTAGAATTTGGTGTTGTGGCTTCTCTCTGTCCACCGCTAGATTTCTTCAACTCGCAACAACCTATTGTTGAATTTGCTAAAGAAAAATCGGTCACAGAAAGATTTGTGTTTGAAGCCTCAAAGATTGATGCTCTTAAGTCTAAAGCTGCCAGTGCCACCGTGCCAAATCCTACGCGTGTTGAAGTTGTATCTGCACTCATTTGGAAATGTGCCACAGAAGCATCAAGATCAAACTCAGGTTCTGTGAGGCCATCTGTGTGGTGTCAAGTGGTGAACATGCGGAAAAGATCAGGGCAGCCCTTGACAGAGAACTCACTGGGGAATTTTGTTTGGTACTTTGCATCAATGACAATGGAAAGTGGAGTAGATCTCCAAAGCTTGGTTGCTAAATTCAGGAAAGGCATTGAGGAATTTAAAGAAAAATATCCTAATGGAGTTAGTCCGCAGGACGTATGTCAAACCATACAGGAATCTGGGAACCTCATGACAAAGGATGGTATAGACAATTATAGTTGCAGCAGCTGGTGCAGATTTCCCTTCTATGAAGCCAATTTTGGATGGGGTAAGCCATCATGGGTGAGTATCCGTACTATGGCAGCAAAGAACACAATTCAATTGACAGATGCGAGAGATGGAAAGGGTATGGAAGTGTCCTTGGCTTTGAAAGAAGAAGATATGGCCATAATTGGTAGTAATGAGGAGCTGCTTGCATATGCATCTCTAAATCCAGCTGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

287

Amino Acids

31.38

Weight (kDa)

5.84

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 276 1.6e-47 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 502
AccII CGCG 1 cut(s) 298
AciI CCGC 4 cut(s) 113, 158, 403, 566
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 6 cut(s) 56, 128, 194, 445, 512, 533
AfaI GTAC 2 cut(s) 458, 712
AfiI CCNNNNNNNGG 2 cut(s) 502, 715
AflII CTTAAG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 296
AgsI TTSAA 6 cut(s) 172, 194, 236, 305, 737, 787
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AluBI AGCT 7 cut(s) 69, 122, 269, 501, 645, 826, 854
AluI AGCT 7 cut(s) 69, 122, 269, 501, 645, 826, 854
AlwNI CAGNNNCTG 2 cut(s) 365, 645
AoxI GGCC 2 cut(s) 371, 801
ApeKI GCWGC 8 cut(s) 74, 269, 418, 639, 642, 719, 826, 854
ApoI RAATTY 6 cut(s) 56, 128, 194, 445, 512, 533
AseI ATTAAT 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 47, 406, 712
BalI TGGCCA 1 cut(s) 803
BbvI GCAGC 8 cut(s) 61, 256, 430, 651, 654, 731, 813, 841
BccI CCATC 5 cut(s) 382, 611, 675, 700, 749
BciVI GTATCC 1 cut(s) 716
BclI TGATCA 1 cut(s) 103
BfaI CTAG 2 cut(s) 99, 161
BfmI CTRYAG 2 cut(s) 75, 123
BfrI CTTAAG 1 cut(s) 257
BfuI GTATCC 1 cut(s) 716
BglII AGATCT 1 cut(s) 490
BisI GCNGC 8 cut(s) 75, 270, 419, 640, 643, 720, 827, 855
BlsI GCNGC 8 cut(s) 76, 271, 420, 641, 644, 721, 828, 856
BmiI GGNNCC 3 cut(s) 91, 117, 602
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 6 cut(s) 28, 241, 353, 473, 736, 848
BmuI ACTGGG 1 cut(s) 449
BoxI GACNNNNGTC 1 cut(s) 576
BplI GAGNNNNNCTC 2 cut(s) 477, 509
BpmI CTGGAG 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 777
Bsc4I CCNNNNNNNGG 2 cut(s) 502, 715
Bse1I ACTGG 3 cut(s) 93, 273, 444
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 2 cut(s) 622, 686
BseLI CCNNNNNNNGG 2 cut(s) 502, 715
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 3 cut(s) 93, 273, 444
BseRI GAGGAG 1 cut(s) 836
BseXI GCAGC 8 cut(s) 61, 256, 430, 651, 654, 731, 813, 841
BseYI CCCAGC 1 cut(s) 69
BsgI GTGCAG 2 cut(s) 300, 670
Bsh1236I CGCG 1 cut(s) 298
BshFI GGCC 2 cut(s) 373, 803
BslI CCNNNNNNNGG 2 cut(s) 502, 715
BsnI GGCC 2 cut(s) 373, 803
Bsp143I GATC 4 cut(s) 103, 350, 410, 490
BspACI CCGC 4 cut(s) 113, 158, 403, 566
BspANI GGCC 2 cut(s) 373, 803
BspCNI CTCAG 1 cut(s) 371
BspFNI CGCG 1 cut(s) 298
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 91, 117, 602
BspMAI CTGCAG 1 cut(s) 79
BspTI CTTAAG 1 cut(s) 257
BsrI ACTGG 3 cut(s) 93, 273, 444
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 4 cut(s) 103, 350, 410, 490
BssT1I CCWWGG 1 cut(s) 777
Bst4CI ACNGT 1 cut(s) 283
BstAFI CTTAAG 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 831
BstDEI CTNAG 1 cut(s) 358
BstF5I GGATG 2 cut(s) 622, 686
BstFNI CGCG 1 cut(s) 298
BstKTI GATC 4 cut(s) 106, 353, 413, 493
BstMBI GATC 4 cut(s) 103, 350, 410, 490
BstMWI GCNNNNNNNGC 4 cut(s) 119, 275, 341, 648
BstNSI RCATGY 1 cut(s) 403
BstPAI GACNNNNGTC 1 cut(s) 576
BstSFI CTRYAG 2 cut(s) 75, 123
BstUI CGCG 1 cut(s) 298
BstV1I GCAGC 8 cut(s) 61, 256, 430, 651, 654, 731, 813, 841
BstX2I RGATCY 1 cut(s) 490
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 490
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 2 cut(s) 373, 803
BtsCI GGATG 2 cut(s) 622, 686
BtsIMutI CAGTG 3 cut(s) 100, 280, 437
Cac8I GCNNGC 1 cut(s) 831
CaiI CAGNNNCTG 2 cut(s) 365, 645
CciI TCATGA 1 cut(s) 606
Csp6I GTAC 2 cut(s) 457, 711
CviAII CATG 3 cut(s) 400, 607, 696
CviQI GTAC 2 cut(s) 457, 711
DdeI CTNAG 1 cut(s) 358
DpnI GATC 4 cut(s) 105, 352, 412, 492
DpnII GATC 4 cut(s) 103, 350, 410, 490
DraI TTTAAA 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 801
Eco130I CCWWGG 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 777
EcoT22I ATGCAT 1 cut(s) 841
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 3 cut(s) 403, 610, 699
FatI CATG 3 cut(s) 399, 606, 695
FauNDI CATATG 1 cut(s) 835
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 8 cut(s) 75, 270, 419, 640, 643, 720, 827, 855
FokI GGATG 2 cut(s) 629, 693
Fsp4HI GCNGC 8 cut(s) 75, 270, 419, 640, 643, 720, 827, 855
FspBI CTAG 2 cut(s) 99, 161
GluI GCNGC 8 cut(s) 75, 270, 419, 640, 643, 720, 827, 855
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 2 cut(s) 373, 803
Hin1II CATG 3 cut(s) 403, 610, 699
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 499
HinfI GANTC 2 cut(s) 12, 593
HphI GGTGA 3 cut(s) 47, 406, 712
Hpy166II GTNNAC 3 cut(s) 16, 155, 397
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 3 cut(s) 348, 517, 607
Hpy8I GTNNAC 3 cut(s) 16, 155, 397
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 7 cut(s) 77, 317, 464, 639, 651, 833, 839
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 275, 341, 648
HpyF3I CTNAG 1 cut(s) 358
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 3 cut(s) 403, 610, 699
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 350, 410, 490
LmnI GCTCC 2 cut(s) 95, 823
Lsp1109I GCAGC 8 cut(s) 61, 256, 430, 651, 654, 731, 813, 841
LweI GCATC 6 cut(s) 28, 241, 353, 473, 736, 848
MaeI CTAG 2 cut(s) 99, 161
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 1 cut(s) 214
MalI GATC 4 cut(s) 105, 352, 412, 492
MboI GATC 4 cut(s) 103, 350, 410, 490
MboII GAAGA 3 cut(s) 160, 803, 806
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 1 cut(s) 490
MlsI TGGCCA 1 cut(s) 803
MluI ACGCGT 1 cut(s) 296
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 5 cut(s) 250, 363, 523, 614, 814
Mox20I TGGCCA 1 cut(s) 803
Mph1103I ATGCAT 1 cut(s) 841
MscI TGGCCA 1 cut(s) 803
MseI TTAA 3 cut(s) 63, 258, 537
MslI CAYNNNNRTG 1 cut(s) 379
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 3 cut(s) 122, 645, 854
MspCI CTTAAG 1 cut(s) 257
MunI CAATTG 1 cut(s) 737
MvnI CGCG 1 cut(s) 298
MwoI GCNNNNNNNGC 4 cut(s) 119, 275, 341, 648
NdeI CATATG 1 cut(s) 835
NdeII GATC 4 cut(s) 103, 350, 410, 490
NlaIII CATG 3 cut(s) 403, 610, 699
NlaIV GGNNCC 3 cut(s) 91, 117, 602
NmuCI GTSAC 1 cut(s) 214
NsiI ATGCAT 1 cut(s) 841
NspI RCATGY 1 cut(s) 403
PagI TCATGA 1 cut(s) 606
PfeI GAWTC 1 cut(s) 593
PflMI CCANNNNNTGG 1 cut(s) 502
PkrI GCNGC 8 cut(s) 76, 271, 420, 641, 644, 721, 828, 856
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PshAI GACNNNNGTC 1 cut(s) 576
PshBI ATTAAT 1 cut(s) 63
PspFI CCCAGC 1 cut(s) 69
PspN4I GGNNCC 3 cut(s) 91, 117, 602
PstI CTGCAG 1 cut(s) 79
PstNI CAGNNNCTG 2 cut(s) 365, 645
PsuI RGATCY 1 cut(s) 490
PvuII CAGCTG 3 cut(s) 122, 645, 854
RsaI GTAC 2 cut(s) 458, 712
RsaNI GTAC 2 cut(s) 457, 711
RseI CAYNNNNRTG 1 cut(s) 379
SaqAI TTAA 3 cut(s) 63, 258, 537
SatI GCNGC 8 cut(s) 75, 270, 419, 640, 643, 720, 827, 855
Sau3AI GATC 4 cut(s) 103, 350, 410, 490
SchI GAGTC 1 cut(s) 21
SfaNI GCATC 6 cut(s) 28, 241, 353, 473, 736, 848
SfcI CTRYAG 2 cut(s) 75, 123
SmiMI CAYNNNNRTG 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
SsiI CCGC 4 cut(s) 113, 158, 403, 566
SspMI CTAG 2 cut(s) 99, 161
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 1 cut(s) 283
TaiI ACGT 1 cut(s) 576
TaqII GACCGA 1 cut(s) 202
TfiI GAWTC 1 cut(s) 593
Tru1I TTAA 3 cut(s) 63, 258, 537
Tru9I TTAA 3 cut(s) 63, 258, 537
TscAI CASTG 3 cut(s) 100, 280, 444
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 8 cut(s) 74, 269, 418, 639, 642, 719, 826, 854
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 49, 681
TspGWI ACGGA 1 cut(s) 698
TspRI CASTG 3 cut(s) 100, 280, 444
Van91I CCANNNNNTGG 1 cut(s) 502
Vha464I CTTAAG 1 cut(s) 257
VspI ATTAAT 1 cut(s) 63
XapI RAATTY 6 cut(s) 56, 128, 194, 445, 512, 533
XceI RCATGY 1 cut(s) 403
XspI CTAG 2 cut(s) 99, 161
Zsp2I ATGCAT 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.