RchiOBHm_Chr4g0412981

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000200
Physical Location & Seq
Reverse (-)
37074885 .. 37076234
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38358

Sequence Viewer

Length: 1350 bp
ATGTGGAGCAAAATGTGTTCAGAAATGATGGTTAAAGTGATCAACAAGGAAACAGTTACACCATCATCTTCTACTCTTCACCACCTTATGACTTCCAACCTCTCTGTTTTTGATCACTTTGTACCAGACTTGTATACCCCCCTGCTTCTCTTCTATCCTAATAATAGTACCACTGATCATAAGATCAATACAGTTGATCACCACCACTCTATGATTACTGAAAGATCCAAACTTCTGAAAACTTCATTATCTGAAACCCTCAACCACTTCTATCCCTTCGCGGGAAGAATATTTAGCCACAACAACATTCTTTCAATCTGTTGCAATGATAATGGGGCAGCATTTATCCAAACCCGTGTCAACTGTCCTATATCAAAGGTTTTGGAAAAGCCCCATCCTCAAATACTAAATCAATTACTTCCCATTGACATAGAATCAACATTTGAAAGCACAGGCTATCTCTTATTAGTCCAAGTCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGGTTAGCATTTCACATAAGATCGCGGACGGCTTCACACGGGGAACATTCATCCGTAGCTGGGCAGCAATGGGCCTTGGCTCTGATGTAGCGGCTCTTCCAGCTGCAGAATTTGGTGTTTCAGCATCTCTTTACCCACCACAAGATTTAATCACTAACTCATTGCCAACTTCCATGAAATCTGTTAATAATGAAGCTTGCGTACAAAGAAGATTTGTGTTTGATGCCTCAAACATTGTACATCTCAAGTCTAAAGCCACAAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTCAGCGCTTATTTGGAAATGTGCAATGGAAGCATCAACATCAAACTTGGGTTTTACACGGCCAGCCAATCTGCATCTAGCAACAAACATGCGGAAAGTATTGGAGCATCCCACTTTAATGGGAAATATTGTAGCACCTGTATTAGTAAAGACACAAGAAACTGATGCAACTCTTCAAAGCTTGGTTGCTCTTCTACGGGAAGCCATTGAAGAATTTAAAGTGAAATATAGTAATAGAGATAGCAGGGATGATATCTGCCAGCATTTGAATGAGAGTATGGATATAATGGGTAAAAATGACATGAATAACTATTTATGCTCTAGTTGGTGTAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAATCCATCTTGGGTCACTCATCCAGGTATCCCTATAAACAATGTAATTGTATTAATTGAGACAAAAGATGGCGAAGGCATAGAAGCAATCTTGAGTTTCAAAGGAGAGGACATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGGTTCTCTCAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

449

Amino Acids

49.79

Weight (kDa)

6.05

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 438 4.3e-78 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 134
AccII CGCG 2 cut(s) 281, 533
AciI CCGC 4 cut(s) 281, 533, 599, 898
AclWI GGATC 1 cut(s) 219
AcoI YGGCCR 1 cut(s) 866
AcsI RAATTY 2 cut(s) 617, 1019
AfaI GTAC 4 cut(s) 123, 169, 711, 747
AfeI AGCGCT 1 cut(s) 813
AfiI CCNNNNNNNGG 2 cut(s) 281, 568
AgsI TTSAA 9 cut(s) 315, 446, 488, 800, 983, 1016, 1075, 1273, 1298
AjnI CCWGG 1 cut(s) 1195
AjuI GAANNNNNNNTTGG 4 cut(s) 1146, 1165, 1178, 1197
AluBI AGCT 5 cut(s) 567, 611, 704, 987, 1312
AluI AGCT 5 cut(s) 567, 611, 704, 987, 1312
Alw26I GTCTC 1 cut(s) 1226
AlwI GGATC 1 cut(s) 219
Aor51HI AGCGCT 1 cut(s) 813
AoxI GGCC 2 cut(s) 580, 866
ApeKI GCWGC 4 cut(s) 338, 572, 611, 1312
ApoI RAATTY 2 cut(s) 617, 1019
AseI ATTAAT 1 cut(s) 1226
AspLEI GCGC 1 cut(s) 814
AspS9I GGNCC 1 cut(s) 580
AsuHPI GGTGA 2 cut(s) 71, 191
BarI GAAGNNNNNNTAC 4 cut(s) 588, 620, 693, 725
BauI CACGAG 1 cut(s) 792
BbvI GCAGC 4 cut(s) 350, 584, 598, 1299
BccI CCATC 6 cut(s) 22, 70, 402, 1161, 1186, 1235
BceAI ACGGC 2 cut(s) 553, 881
BciT130I CCWGG 1 cut(s) 1197
BciVI GTATCC 1 cut(s) 1211
BclI TGATCA 4 cut(s) 39, 112, 175, 196
BcoDI GTCTC 1 cut(s) 1226
BfaI CTAG 2 cut(s) 884, 1128
BfmI CTRYAG 1 cut(s) 612
BfoI RGCGCY 1 cut(s) 815
BfuI GTATCC 1 cut(s) 1211
BisI GCNGC 5 cut(s) 339, 573, 600, 612, 1313
BlsI GCNGC 5 cut(s) 340, 574, 601, 613, 1314
Bme1390I CCNGG 1 cut(s) 1197
BmgT120I GGNCC 1 cut(s) 580
BmrFI CCNGG 1 cut(s) 1197
BmsI GCATC 6 cut(s) 641, 721, 848, 889, 922, 961
BpuEI CTTGAG 2 cut(s) 737, 1285
BsaJI CCNNGG 1 cut(s) 583
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 568
Bse3DI GCAATG 4 cut(s) 331, 582, 668, 837
BseBI CCWGG 1 cut(s) 1197
BseDI CCNNGG 1 cut(s) 583
BseGI GGATG 6 cut(s) 394, 558, 913, 1060, 1172, 1192
BseLI CCNNNNNNNGG 2 cut(s) 281, 568
BseMI GCAATG 4 cut(s) 331, 582, 668, 837
BseXI GCAGC 4 cut(s) 350, 584, 598, 1299
BseYI CCCAGC 1 cut(s) 567
Bsh1236I CGCG 2 cut(s) 281, 533
BshFI GGCC 2 cut(s) 582, 868
BslI CCNNNNNNNGG 2 cut(s) 281, 568
BsmAI GTCTC 1 cut(s) 1226
BsnI GGCC 2 cut(s) 582, 868
Bsp1407I TGTACA 1 cut(s) 745
Bsp143I GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
BspACI CCGC 4 cut(s) 281, 533, 599, 898
BspANI GGCC 2 cut(s) 582, 868
BspFNI CGCG 2 cut(s) 281, 533
BspMAI CTGCAG 1 cut(s) 616
BspPI GGATC 1 cut(s) 219
BspQI GCTCTTC 2 cut(s) 609, 1002
BsrDI GCAATG 4 cut(s) 331, 582, 668, 837
BsrGI TGTACA 1 cut(s) 745
BssECI CCNNGG 1 cut(s) 583
BssMI GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
BssNAI GTATAC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 792
BssT1I CCWWGG 1 cut(s) 583
Bst1107I GTATAC 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 792
Bst2UI CCWGG 1 cut(s) 1197
Bst4CI ACNGT 5 cut(s) 55, 193, 365, 778, 1342
Bst6I CTCTTC 5 cut(s) 81, 155, 609, 984, 1002
BstAUI TGTACA 1 cut(s) 745
BstC8I GCNNGC 4 cut(s) 706, 870, 1067, 1317
BstF5I GGATG 6 cut(s) 394, 558, 913, 1060, 1172, 1192
BstFNI CGCG 2 cut(s) 281, 533
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 1 cut(s) 814
BstKTI GATC 7 cut(s) 42, 115, 178, 186, 199, 227, 531
BstMAI GTCTC 1 cut(s) 1226
BstMBI GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
BstMWI GCNNNNNNNGC 3 cut(s) 608, 770, 836
BstNI CCWGG 1 cut(s) 1197
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 1 cut(s) 1195
BstSFI CTRYAG 1 cut(s) 612
BstUI CGCG 2 cut(s) 281, 533
BstV1I GCAGC 4 cut(s) 350, 584, 598, 1299
BstX2I RGATCY 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 925
BstYI RGATCY 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 135
BsuI GTATCC 1 cut(s) 1211
BsuRI GGCC 2 cut(s) 582, 868
BtsCI GGATG 6 cut(s) 394, 558, 913, 1060, 1172, 1192
BtsIMutI CAGTG 2 cut(s) 171, 1338
Cac8I GCNNGC 4 cut(s) 706, 870, 1067, 1317
CfoI GCGC 1 cut(s) 814
Cfr13I GGNCC 1 cut(s) 580
Csp6I GTAC 4 cut(s) 122, 168, 710, 746
CviAII CATG 4 cut(s) 682, 895, 1108, 1285
CviQI GTAC 4 cut(s) 122, 168, 710, 746
DpnI GATC 7 cut(s) 41, 114, 177, 185, 198, 226, 530
DpnII GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
DraI TTTAAA 1 cut(s) 1024
EaeI YGGCCR 1 cut(s) 866
Eam1104I CTCTTC 5 cut(s) 81, 155, 609, 984, 1002
EarI CTCTTC 5 cut(s) 81, 155, 609, 984, 1002
Eco130I CCWWGG 1 cut(s) 583
Eco32I GATATC 1 cut(s) 1060
Eco47III AGCGCT 1 cut(s) 813
EcoRII CCWGG 1 cut(s) 1195
EcoRV GATATC 1 cut(s) 1060
EcoT14I CCWWGG 1 cut(s) 583
ErhI CCWWGG 1 cut(s) 583
FaeI CATG 4 cut(s) 685, 898, 1111, 1288
FatI CATG 4 cut(s) 681, 894, 1107, 1284
FauI CCCGC 1 cut(s) 274
FauNDI CATATG 1 cut(s) 1321
FbaI TGATCA 4 cut(s) 39, 112, 175, 196
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 5 cut(s) 339, 573, 600, 612, 1313
FokI GGATG 6 cut(s) 381, 545, 900, 1067, 1179, 1179
Fsp4HI GCNGC 5 cut(s) 339, 573, 600, 612, 1313
FspBI CTAG 2 cut(s) 884, 1128
GlaI GCGC 1 cut(s) 813
GluI GCNGC 5 cut(s) 339, 573, 600, 612, 1313
GsaI CCCAGC 1 cut(s) 571
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 2 cut(s) 582, 868
HhaI GCGC 1 cut(s) 814
Hin1II CATG 4 cut(s) 685, 898, 1111, 1288
Hin6I GCGC 1 cut(s) 812
HinP1I GCGC 1 cut(s) 812
HincII GTYRAC 2 cut(s) 361, 478
HindII GTYRAC 2 cut(s) 361, 478
HindIII AAGCTT 2 cut(s) 702, 985
HinfI GANTC 1 cut(s) 434
HphI GGTGA 2 cut(s) 71, 191
Hpy166II GTNNAC 4 cut(s) 135, 361, 478, 497
Hpy188I TCNGA 4 cut(s) 22, 237, 253, 592
Hpy188III TCNNGA 1 cut(s) 1264
Hpy8I GTNNAC 4 cut(s) 135, 361, 478, 497
HpyAV CCTTC 2 cut(s) 286, 1241
HpyCH4III ACNGT 5 cut(s) 55, 193, 365, 778, 1342
HpyCH4V TGCA 7 cut(s) 324, 503, 614, 830, 880, 974, 1319
HpyF10VI GCNNNNNNNGC 3 cut(s) 608, 770, 836
Hsp92II CATG 4 cut(s) 685, 898, 1111, 1288
HspAI GCGC 1 cut(s) 812
Ksp22I TGATCA 4 cut(s) 39, 112, 175, 196
Kzo9I GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
LguI GCTCTTC 2 cut(s) 609, 1002
LmnI GCTCC 3 cut(s) 6, 910, 1309
Lsp1109I GCAGC 4 cut(s) 350, 584, 598, 1299
LweI GCATC 6 cut(s) 641, 721, 848, 889, 922, 961
MaeI CTAG 2 cut(s) 884, 1128
MaeIII GTNAC 2 cut(s) 55, 1186
MalI GATC 7 cut(s) 41, 114, 177, 185, 198, 226, 530
MboI GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
MboII GAAGA 9 cut(s) 60, 68, 142, 297, 596, 729, 971, 989, 1028
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 224
MluCI AATT 8 cut(s) 413, 504, 617, 1019, 1159, 1218, 1227, 1293
MmeI TCCRAC 2 cut(s) 120, 812
MnlI CCTC 5 cut(s) 110, 269, 408, 745, 1273
MseI TTAA 6 cut(s) 33, 656, 693, 923, 1023, 1226
MslI CAYNNNNRTG 2 cut(s) 923, 1074
MspA1I CMGCKG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 1197
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 1 cut(s) 1197
MvnI CGCG 2 cut(s) 281, 533
MwoI GCNNNNNNNGC 3 cut(s) 608, 770, 836
NdeI CATATG 1 cut(s) 1321
NdeII GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
NlaIII CATG 4 cut(s) 685, 898, 1111, 1288
NmuCI GTSAC 1 cut(s) 1186
NspI RCATGY 1 cut(s) 898
PciSI GCTCTTC 2 cut(s) 609, 1002
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 5 cut(s) 340, 574, 601, 613, 1314
PshBI ATTAAT 1 cut(s) 1226
Psp6I CCWGG 1 cut(s) 1195
PspFI CCCAGC 1 cut(s) 567
PspGI CCWGG 1 cut(s) 1195
PspPI GGNCC 1 cut(s) 580
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 4 cut(s) 123, 169, 711, 747
RsaNI GTAC 4 cut(s) 122, 168, 710, 746
RseI CAYNNNNRTG 2 cut(s) 923, 1074
SapI GCTCTTC 2 cut(s) 609, 1002
SaqAI TTAA 6 cut(s) 33, 656, 693, 923, 1023, 1226
SatI GCNGC 5 cut(s) 339, 573, 600, 612, 1313
Sau3AI GATC 7 cut(s) 39, 112, 175, 183, 196, 224, 528
Sau96I GGNCC 1 cut(s) 580
ScrFI CCNGG 1 cut(s) 1197
SfaNI GCATC 6 cut(s) 641, 721, 848, 889, 922, 961
SfcI CTRYAG 1 cut(s) 612
SmiMI CAYNNNNRTG 2 cut(s) 923, 1074
SmlI CTYRAG 2 cut(s) 752, 1264
SmoI CTYRAG 2 cut(s) 752, 1264
Sse9I AATT 8 cut(s) 413, 504, 617, 1019, 1159, 1218, 1227, 1293
SsiI CCGC 4 cut(s) 281, 533, 599, 898
SspI AATATT 2 cut(s) 291, 934
SspMI CTAG 2 cut(s) 884, 1128
StyD4I CCNGG 1 cut(s) 1195
StyI CCWWGG 1 cut(s) 583
TaaI ACNGT 5 cut(s) 55, 193, 365, 778, 1342
TasI AATT 8 cut(s) 413, 504, 617, 1019, 1159, 1218, 1227, 1293
TatI WGTACW 1 cut(s) 745
TauI GCSGC 1 cut(s) 602
TfiI GAWTC 1 cut(s) 434
Tru1I TTAA 6 cut(s) 33, 656, 693, 923, 1023, 1226
Tru9I TTAA 6 cut(s) 33, 656, 693, 923, 1023, 1226
TscAI CASTG 2 cut(s) 178, 1345
TseFI GTSAC 1 cut(s) 1186
TseI GCWGC 4 cut(s) 338, 572, 611, 1312
Tsp45I GTSAC 1 cut(s) 1186
TspDTI ATGAA 6 cut(s) 234, 547, 698, 714, 1124, 1167
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 178, 1345
VspI ATTAAT 1 cut(s) 1226
XapI RAATTY 2 cut(s) 617, 1019
XceI RCATGY 1 cut(s) 898
XmiI GTMKAC 1 cut(s) 134
XspI CTAG 2 cut(s) 884, 1128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.