FvH4_3g15901

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000200
Physical Location & Seq
Forward (+)
10009102 .. 10009762
661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15901.t1

Sequence Viewer

Length: 372 bp
ATGGCTAAGACGTTTCTCTCGTGTTCTTATGAGATTGAGGACTCGCCCTACATTACTCTTGCAGATTTTGTTTTCCCACCACAAGGTCATGATTTAGTCATCAACTCATCGCAACGTGCCGTGGATCCCAAACCCGACAAGTGTGGGGAAACGGAAGCATCAAGATCAAACTCTGGTTCTTCAAGGCCATCCATGTGGCGTATTCAAGCAGAAAACATGCGGAAAGTGTTGCGCAAACCCGATTTAATGGGAAATGCTGTAGGAGTCTCTATAGCAAAGACACAAGAAAGTGAGGCAAATCTTCAAAGCTTGGTTGCTACAATCAGGAAAGACAGCGAGGAATTGAAATTGAAATATGGTAATGGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

124

Amino Acids

13.56

Weight (kDa)

6.58

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 233
AciI CCGC 1 cut(s) 220
AclWI GGATC 2 cut(s) 119, 132
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 5 cut(s) 183, 206, 305, 346, 352
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
Alw26I GTCTC 1 cut(s) 271
AlwI GGATC 2 cut(s) 119, 132
AoxI GGCC 1 cut(s) 185
AspLEI GCGC 1 cut(s) 234
BamHI GGATCC 1 cut(s) 124
BauI CACGAG 1 cut(s) 19
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 271
BfmI CTRYAG 2 cut(s) 258, 270
BmiI GGNNCC 1 cut(s) 126
BmsI GCATC 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 83
BshFI GGCC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 271
BsnI GGCC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 124, 164
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 187
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 2 cut(s) 119, 132
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 124, 164
BssSI CACGAG 1 cut(s) 19
Bst2BI CACGAG 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 6
BstDSI CCRYGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 234
BstKTI GATC 2 cut(s) 127, 167
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 2 cut(s) 124, 164
BstNSI RCATGY 1 cut(s) 220
BstSFI CTRYAG 2 cut(s) 258, 270
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 93
BtsCI GGATG 1 cut(s) 188
CciI TCATGA 1 cut(s) 88
CfoI GCGC 1 cut(s) 234
CviAII CATG 3 cut(s) 89, 193, 217
CviJI RGCY 3 cut(s) 5, 187, 309
CviKI_1 RGCY 3 cut(s) 5, 187, 309
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 126, 166
DpnII GATC 2 cut(s) 124, 164
FaeI CATG 3 cut(s) 92, 196, 220
FaiI YATR 6 cut(s) 30, 90, 194, 218, 272, 357
FatI CATG 3 cut(s) 88, 192, 216
FokI GGATG 1 cut(s) 175
FspI TGCGCA 1 cut(s) 233
GlaI GCGC 1 cut(s) 233
HaeIII GGCC 1 cut(s) 187
HhaI GCGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 92, 196, 220
Hin6I GCGC 1 cut(s) 232
HinP1I GCGC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 2 cut(s) 41, 264
Hpy188III TCNNGA 3 cut(s) 89, 162, 325
HpyCH4IV ACGT 2 cut(s) 11, 115
HpyCH4V TGCA 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 6
HpySE526I ACGT 2 cut(s) 11, 115
Hsp92II CATG 3 cut(s) 92, 196, 220
HspAI GCGC 1 cut(s) 232
Kzo9I GATC 2 cut(s) 124, 164
LpnPI CCDG 2 cut(s) 159, 310
LweI GCATC 1 cut(s) 167
MaeII ACGT 2 cut(s) 11, 115
MalI GATC 2 cut(s) 126, 166
MboI GATC 2 cut(s) 124, 164
MboII GAAGA 2 cut(s) 171, 293
MflI RGATCY 1 cut(s) 124
MluCI AATT 2 cut(s) 341, 347
MlyI GAGTC 2 cut(s) 35, 273
MnlI CCTC 3 cut(s) 31, 286, 331
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 193
NdeII GATC 2 cut(s) 124, 164
NlaIII CATG 3 cut(s) 92, 196, 220
NlaIV GGNNCC 1 cut(s) 126
NsbI TGCGCA 1 cut(s) 233
NspI RCATGY 1 cut(s) 220
PagI TCATGA 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PleI GAGTC 2 cut(s) 35, 272
PpsI GAGTC 2 cut(s) 35, 272
PspN4I GGNNCC 1 cut(s) 126
PsuI RGATCY 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 193
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 2 cut(s) 124, 164
SchI GAGTC 2 cut(s) 35, 273
SetI ASST 4 cut(s) 14, 88, 118, 311
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 2 cut(s) 258, 270
SmiMI CAYNNNNRTG 1 cut(s) 193
Sse9I AATT 2 cut(s) 341, 347
SsiI CCGC 1 cut(s) 220
TaiI ACGT 2 cut(s) 14, 118
TasI AATT 2 cut(s) 341, 347
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.