FvH4_3g15903

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000200
Physical Location & Seq
Forward (+)
10017510 .. 10018931
1422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15903.t1

Sequence Viewer

Length: 1326 bp
ATGGGTTCAGAGATTAAGGTTGTAGTCATTCACAAAGAAACAATCAAACCATCCTCTCCAACTCCTCCCCACCTTGAAAGTTTGAGCCTTTCTGTTTTTGATCAGCTTCAACCTGAATTTTATGTCCCACTACTTCTCTTCTATCCCAATAATAGGGATGAGATCAATGGTGATCATCATTCTTTGGCTGCTGAAAGATCAAACCTTCTAAAAACATCATTGTCTAAGACCCTCTGTCAATTCTACCCCTTTGCAGGGAAATTTGAATATAATGTTTCAATATGTTGCAATGACCATGGGGCAGCATTTCTTCAAGCCCAAGTGAATTGTCCCATATCCAAAGTTTTGGAAAAACCCGATCACAAGGTTTTAAAACAACTGCTTCCAGCTGATATAGCATCCACACAAGAAGTCGCAGGCCACCTTCTACTAGTCCAGGCCAGCTTCTTTGAATGTGGTGGGATGGCAATTGGAGTCAATATCTCACATAAGGTTGGTGATGCTTTTACATTCAGCAAGTTCATTAATAGCTGGGCTGCAGTTTCCCTAGGCTCCAGTGCTAGTGATCATATAGCGGTTCCAGCTGTAGAATTTGGTGTTGTGGCTTCTGTCTGTCCACCACTAGATTTCTTCAACTCGCGACAACCTATTGTTGAATTTGCTATAGAGAAATCGGTCACTGAAAGATTTGTGTTTGAAGCCTCAAAGATTGATGATCTTAAGTCTAAAGCTGCCAGCTCTGCTGTGCCAAATCCCACACGTGTTGAAGTTGTATCTGCACTCATTTGGAAATGTGCTACAGAGGCATCGAGATCAAACTCAGGTTCTGTGAGGCCATCTGTGTGGTGTCAAGTGGTGAACATGCGGAAAAGATCAGGGCAGCCCTTGACAGAAGACTCACTGGGGAATTTTGTTTGGTTCTTTGCATCAATGACAATGGAAAGTGAAGTAGATCTCCAAAGCTTGGTTGCTAATTTCAGGAAAGGCATTGAGGAATTTAAAGAAAAGTATCCTAATGGAGTTGGTTCGCAGGACGTATGTCAGACCATACAAGAATCTGGGAACCTCATGACAAAGGATGGTATAGACAACTATAGTTGCAGCAGCTGGTGCAGATTTCCCTTCTATGAGGCCAATTTTGGATGGGGTAAGCCATCATGGGTGAGTATCCGCACTATGTCAGCCAAGAACACAATTCAATTGACAGATACGAGAGATGGAAAGGGAATAGAAGTGTCCTTGGCTTTGAAAGAAGAAGATATGGCCATAATCACTAGCAATAAGGAGCTGCTTGAATATGCATTTCTAAATCCAGCTGCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

442

Amino Acids

48.58

Weight (kDa)

5.58

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 430 2.6e-90 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 964
AccII CGCG 1 cut(s) 640
AciI CCGC 3 cut(s) 575, 865, 1171
AcoI YGGCCR 1 cut(s) 1263
AcsI RAATTY 6 cut(s) 116, 260, 590, 656, 907, 995
AcvI CACGTG 1 cut(s) 761
AfiI CCNNNNNNNGG 4 cut(s) 153, 254, 255, 964
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 2 cut(s) 758, 760
AhdI GACNNNNNGTC 1 cut(s) 234
AhlI ACTAGT 1 cut(s) 430
AjnI CCWGG 1 cut(s) 435
AlwNI CAGNNNCTG 3 cut(s) 827, 1107, 1319
AoxI GGCC 5 cut(s) 418, 438, 833, 1131, 1263
ApeKI GCWGC 9 cut(s) 188, 302, 536, 731, 880, 1101, 1104, 1288, 1316
ApoI RAATTY 6 cut(s) 116, 260, 590, 656, 907, 995
AseI ATTAAT 1 cut(s) 525
AspA2I CCTAGG 1 cut(s) 547
AsuHPI GGTGA 4 cut(s) 182, 509, 868, 1174
AvrII CCTAGG 1 cut(s) 547
BalI TGGCCA 1 cut(s) 1265
BbrPI CACGTG 1 cut(s) 761
BbsI GAAGAC 1 cut(s) 900
BbvI GCAGC 9 cut(s) 175, 314, 523, 718, 892, 1113, 1116, 1275, 1303
BccI CCATC 7 cut(s) 58, 457, 844, 1073, 1137, 1162, 1211
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 2 cut(s) 1020, 1178
BclI TGATCA 3 cut(s) 100, 172, 565
BcuI ACTAGT 1 cut(s) 430
BfaI CTAG 5 cut(s) 431, 548, 561, 623, 1275
BfmI CTRYAG 5 cut(s) 537, 585, 663, 798, 1093
BfrI CTTAAG 1 cut(s) 719
BfuI GTATCC 2 cut(s) 1020, 1178
BglII AGATCT 1 cut(s) 952
BisI GCNGC 9 cut(s) 189, 303, 537, 732, 881, 1102, 1105, 1289, 1317
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 9 cut(s) 190, 304, 538, 733, 882, 1103, 1106, 1290, 1318
Bme1390I CCNGG 1 cut(s) 437
BmeRI GACNNNNNGTC 1 cut(s) 234
BmiI GGNNCC 3 cut(s) 553, 579, 1064
BmrFI CCNGG 1 cut(s) 437
BmrI ACTGGG 1 cut(s) 911
BmsI GCATC 4 cut(s) 407, 490, 815, 935
BmuI ACTGGG 1 cut(s) 911
BoxI GACNNNNGTC 1 cut(s) 1038
BpiI GAAGAC 1 cut(s) 900
BpmI CTGGAG 1 cut(s) 538
BsaAI YACGTR 1 cut(s) 761
BsaJI CCNNGG 3 cut(s) 295, 547, 1239
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 254, 255, 964
Bse1I ACTGG 2 cut(s) 555, 906
Bse3DI GCAATG 1 cut(s) 295
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 3 cut(s) 295, 547, 1239
BseGI GGATG 6 cut(s) 50, 163, 398, 468, 1084, 1148
BseLI CCNNNNNNNGG 4 cut(s) 153, 254, 255, 964
BseMI GCAATG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 834
BseNI ACTGG 2 cut(s) 555, 906
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 9 cut(s) 175, 314, 523, 718, 892, 1113, 1116, 1275, 1303
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 2 cut(s) 762, 1132
Bsh1236I CGCG 1 cut(s) 640
BshFI GGCC 5 cut(s) 420, 440, 835, 1133, 1265
BslFI GGGAC 2 cut(s) 110, 315
BslI CCNNNNNNNGG 4 cut(s) 153, 254, 255, 964
BsmFI GGGAC 2 cut(s) 110, 315
BsnI GGCC 5 cut(s) 420, 440, 835, 1133, 1265
Bsp19I CCATGG 1 cut(s) 295
Bsp68I TCGCGA 1 cut(s) 640
BspACI CCGC 3 cut(s) 575, 865, 1171
BspANI GGCC 5 cut(s) 420, 440, 835, 1133, 1265
BspCNI CTCAG 1 cut(s) 833
BspFNI CGCG 1 cut(s) 640
BspHI TCATGA 1 cut(s) 1068
BspLI GGNNCC 3 cut(s) 553, 579, 1064
BspMAI CTGCAG 1 cut(s) 541
BspTI CTTAAG 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 295
BsrI ACTGG 2 cut(s) 555, 906
BssECI CCNNGG 3 cut(s) 295, 547, 1239
BssT1I CCWWGG 3 cut(s) 295, 547, 1239
Bst2UI CCWGG 1 cut(s) 437
Bst6I CTCTTC 1 cut(s) 143
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 1110
BstBAI YACGTR 1 cut(s) 761
BstC8I GCNNGC 3 cut(s) 418, 442, 736
BstDEI CTNAG 2 cut(s) 225, 820
BstDSI CCRYGG 1 cut(s) 295
BstF5I GGATG 6 cut(s) 50, 163, 398, 468, 1084, 1148
BstFNI CGCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 5 cut(s) 395, 581, 740, 803, 1110
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 865
BstPAI GACNNNNGTC 1 cut(s) 1038
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 5 cut(s) 537, 585, 663, 798, 1093
BstUI CGCG 1 cut(s) 640
BstV1I GCAGC 9 cut(s) 175, 314, 523, 718, 892, 1113, 1116, 1275, 1303
BstV2I GAAGAC 1 cut(s) 900
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 2 cut(s) 346, 843
BstYI RGATCY 1 cut(s) 952
BsuI GTATCC 2 cut(s) 1020, 1178
BsuRI GGCC 5 cut(s) 420, 440, 835, 1133, 1265
BtgI CCRYGG 1 cut(s) 295
BtsCI GGATG 6 cut(s) 50, 163, 398, 468, 1084, 1148
BtsIMutI CAGTG 3 cut(s) 562, 678, 899
BtuMI TCGCGA 1 cut(s) 640
Cac8I GCNNGC 3 cut(s) 418, 442, 736
CaiI CAGNNNCTG 3 cut(s) 827, 1107, 1319
CciI TCATGA 1 cut(s) 1068
CspCI CAANNNNNGTGG 2 cut(s) 745, 780
CviAII CATG 4 cut(s) 296, 862, 1069, 1158
DdeI CTNAG 2 cut(s) 225, 820
DraI TTTAAA 2 cut(s) 372, 1000
DriI GACNNNNNGTC 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 1263
Eam1104I CTCTTC 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 3 cut(s) 295, 547, 1239
Eco72I CACGTG 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 3 cut(s) 295, 547, 1239
EcoT22I ATGCAT 1 cut(s) 1303
ErhI CCWWGG 3 cut(s) 295, 547, 1239
FaeI CATG 4 cut(s) 299, 865, 1072, 1161
FaqI GGGAC 2 cut(s) 110, 315
FatI CATG 4 cut(s) 295, 861, 1068, 1157
FbaI TGATCA 3 cut(s) 100, 172, 565
Fnu4HI GCNGC 9 cut(s) 189, 303, 537, 732, 881, 1102, 1105, 1289, 1317
FokI GGATG 6 cut(s) 37, 170, 385, 475, 1091, 1155
Fsp4HI GCNGC 9 cut(s) 189, 303, 537, 732, 881, 1102, 1105, 1289, 1317
FspBI CTAG 5 cut(s) 431, 548, 561, 623, 1275
GluI GCNGC 9 cut(s) 189, 303, 537, 732, 881, 1102, 1105, 1289, 1317
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 5 cut(s) 420, 440, 835, 1133, 1265
Hin1II CATG 4 cut(s) 299, 865, 1072, 1161
HindIII AAGCTT 1 cut(s) 961
HinfI GANTC 3 cut(s) 474, 896, 1055
HphI GGTGA 4 cut(s) 182, 509, 868, 1174
Hpy166II GTNNAC 2 cut(s) 617, 859
Hpy188I TCNGA 2 cut(s) 10, 1044
Hpy188III TCNNGA 4 cut(s) 639, 810, 979, 1069
Hpy8I GTNNAC 2 cut(s) 617, 859
HpyAV CCTTC 3 cut(s) 215, 434, 1132
HpyCH4IV ACGT 2 cut(s) 760, 1035
HpyCH4V TGCA 8 cut(s) 254, 288, 539, 779, 926, 1101, 1113, 1301
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 581, 740, 803, 1110
HpyF3I CTNAG 2 cut(s) 225, 820
HpySE526I ACGT 2 cut(s) 760, 1035
Hsp92II CATG 4 cut(s) 299, 865, 1072, 1161
Ksp22I TGATCA 3 cut(s) 100, 172, 565
LmnI GCTCC 2 cut(s) 557, 1285
Lsp1109I GCAGC 9 cut(s) 175, 314, 523, 718, 892, 1113, 1116, 1275, 1303
LweI GCATC 4 cut(s) 407, 490, 815, 935
MaeI CTAG 5 cut(s) 431, 548, 561, 623, 1275
MaeII ACGT 2 cut(s) 760, 1035
MaeIII GTNAC 1 cut(s) 676
MboII GAAGA 6 cut(s) 130, 302, 622, 905, 1265, 1268
MfeI CAATTG 2 cut(s) 468, 1199
MflI RGATCY 1 cut(s) 952
MlsI TGGCCA 1 cut(s) 1265
MluNI TGGCCA 1 cut(s) 1265
MlyI GAGTC 2 cut(s) 483, 890
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 9 cut(s) 64, 75, 242, 712, 796, 825, 985, 1076, 1123
Mox20I TGGCCA 1 cut(s) 1265
Mph1103I ATGCAT 1 cut(s) 1303
MscI TGGCCA 1 cut(s) 1265
MseI TTAA 5 cut(s) 15, 371, 525, 720, 999
MslI CAYNNNNRTG 1 cut(s) 841
Msp20I TGGCCA 1 cut(s) 1265
MspA1I CMGCKG 4 cut(s) 389, 584, 1107, 1316
MspCI CTTAAG 1 cut(s) 719
MspR9I CCNGG 1 cut(s) 437
MunI CAATTG 2 cut(s) 468, 1199
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 640
MwoI GCNNNNNNNGC 5 cut(s) 395, 581, 740, 803, 1110
NcoI CCATGG 1 cut(s) 295
NlaIII CATG 4 cut(s) 299, 865, 1072, 1161
NlaIV GGNNCC 3 cut(s) 553, 579, 1064
NmuCI GTSAC 1 cut(s) 676
NruI TCGCGA 1 cut(s) 640
NsiI ATGCAT 1 cut(s) 1303
NspI RCATGY 1 cut(s) 865
PagI TCATGA 1 cut(s) 1068
PfeI GAWTC 1 cut(s) 1055
PflMI CCANNNNNTGG 1 cut(s) 964
PkrI GCNGC 9 cut(s) 190, 304, 538, 733, 882, 1103, 1106, 1290, 1318
PleI GAGTC 2 cut(s) 482, 890
PmaCI CACGTG 1 cut(s) 761
PmlI CACGTG 1 cut(s) 761
PpsI GAGTC 2 cut(s) 482, 890
Ppu21I YACGTR 1 cut(s) 761
PshAI GACNNNNGTC 1 cut(s) 1038
PshBI ATTAAT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 435
PspCI CACGTG 1 cut(s) 761
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 553, 579, 1064
PstI CTGCAG 1 cut(s) 541
PstNI CAGNNNCTG 3 cut(s) 827, 1107, 1319
PsuI RGATCY 1 cut(s) 952
PvuII CAGCTG 4 cut(s) 389, 584, 1107, 1316
RruI TCGCGA 1 cut(s) 640
RseI CAYNNNNRTG 1 cut(s) 841
SaqAI TTAA 5 cut(s) 15, 371, 525, 720, 999
SatI GCNGC 9 cut(s) 189, 303, 537, 732, 881, 1102, 1105, 1289, 1317
SchI GAGTC 2 cut(s) 483, 890
ScrFI CCNGG 1 cut(s) 437
SfaNI GCATC 4 cut(s) 407, 490, 815, 935
SfcI CTRYAG 5 cut(s) 537, 585, 663, 798, 1093
SmiMI CAYNNNNRTG 1 cut(s) 841
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
SpeI ACTAGT 1 cut(s) 430
SsiI CCGC 3 cut(s) 575, 865, 1171
SspMI CTAG 5 cut(s) 431, 548, 561, 623, 1275
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 3 cut(s) 295, 547, 1239
TaiI ACGT 2 cut(s) 763, 1038
TaqI TCGA 1 cut(s) 809
TaqII GACCGA 1 cut(s) 664
TfiI GAWTC 1 cut(s) 1055
Tru1I TTAA 5 cut(s) 15, 371, 525, 720, 999
Tru9I TTAA 5 cut(s) 15, 371, 525, 720, 999
TscAI CASTG 3 cut(s) 562, 685, 906
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 9 cut(s) 188, 302, 536, 731, 880, 1101, 1104, 1288, 1316
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 1 cut(s) 511
TspRI CASTG 3 cut(s) 562, 685, 906
Van91I CCANNNNNTGG 1 cut(s) 964
Vha464I CTTAAG 1 cut(s) 719
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 6 cut(s) 116, 260, 590, 656, 907, 995
XceI RCATGY 1 cut(s) 865
XmaJI CCTAGG 1 cut(s) 547
XspI CTAG 5 cut(s) 431, 548, 561, 623, 1275
Zsp2I ATGCAT 1 cut(s) 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.