Rmu_sc0004599.1_g000009

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004599.1
OG0000200
Physical Location & Seq
Reverse (-)
34726 .. 36048
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004599.1_g000009.1.cds

Sequence Viewer

Length: 1323 bp
atgagggttgaagtgatcaacaaggaaacaattacaccatcatctcctactcctcaccaccttacaacttctaacctctctgtttttgatcagtttttaccggacttgtatgtccccctacttctcttctatcccaacaatagtactactaatcacaaggacaatacggttgatcaccactcattgattaccgaaagatccaagcttctgaaaacttcattatctgaagccctcagcctcttctatcctttcgcaggaagaatatttagccacaacaacattctttcaatctgttgcaatgaccatggtgcggcatttatccaaacccgtgtcaactgtcccatatcaaatgttttggaaaagccctatgatgggatagtaaatcaattacttccaaatcgcatagaatcaacatttgaaagcacaggctatctcctactagtccaagccaacttctttgaatgtggtggacttgcaattggggttagcatttcacataagatcgcagacgccttcacactcggaacattcatttgtagctgggcagcaatgagccttggcactgatgtagtggcttttccaactatagaatttggtgttgcagcatctgtttacccaccacaagatttatttatcaagtcattgcaaacttctggggaatatttttatggagattgtgtaaaaaggagatttgttttttatgcctcaaatattctacgtctcaagtcaaaagccgccagtgccatcgttccaaatccaactcgtgttgaagtagtgacagctcttatttgggaatgtgcaatggacgcatcaagatcaaacttgggttttacaatgccagccatgttgtttctaacagcaaacatgcggaaagtattggggcatcccactttaatgggaaatcttttaggatatgtctctgcagcaaaggcacaagaaagtgatgcaactcttcaaagcttggttactatactacgggaaggcattgagaaatttaaagtgaaatatggtaatggagttagcgaagatgatatctaccaacatttcaaagagcatgaagatttaatgggtaagaatgatataaataactatacttgtaccagttggtgcaggtttggcttctacgaagccaattttggatggggaaagccatcatgggtcactattccaggtgtccctatcaagaatctaattttattgattgatacaaaagatggtgaaggcatagaagtgttcttgagtttaaaagaagatgacatggctataattgaaaccgataaggagttgcttgcatatgcatctctaaatcctattgttatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

440

Amino Acids

48.88

Weight (kDa)

5.59

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 1101
AciI CCGC 3 cut(s) 311, 735, 868
AclWI GGATC 1 cut(s) 192
AcsI RAATTY 2 cut(s) 590, 992
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 2 cut(s) 145, 1099
AfiI CCNNNNNNNGG 4 cut(s) 254, 310, 371, 372
AgsI TTSAA 8 cut(s) 11, 288, 419, 461, 770, 956, 1048, 1271
AhlI ACTAGT 1 cut(s) 439
AjnI CCWGG 1 cut(s) 1168
AjuI GAANNNNNNNTTGG 2 cut(s) 1119, 1151
AluBI AGCT 4 cut(s) 205, 540, 782, 960
AluI AGCT 4 cut(s) 205, 540, 782, 960
Alw26I GTCTC 2 cut(s) 725, 922
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 608
ApeKI GCWGC 3 cut(s) 545, 602, 923
ApoI RAATTY 2 cut(s) 590, 992
AsuHPI GGTGA 3 cut(s) 47, 167, 1229
BauI CACGAG 1 cut(s) 762
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 3 cut(s) 557, 614, 935
BccI CCATC 6 cut(s) 46, 365, 752, 1134, 1159, 1208
BciT130I CCWGG 1 cut(s) 1170
BclI TGATCA 3 cut(s) 15, 88, 172
BcoDI GTCTC 2 cut(s) 725, 922
BcuI ACTAGT 1 cut(s) 439
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 2 cut(s) 585, 921
BfuAI ACCTGC 1 cut(s) 1101
BisI GCNGC 5 cut(s) 312, 546, 603, 735, 924
BlsI GCNGC 5 cut(s) 313, 547, 604, 736, 925
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 1170
BmrFI CCNGG 1 cut(s) 1170
BmsI GCATC 5 cut(s) 614, 818, 892, 934, 1307
Bpu10I CCTNAGC 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 707, 1258
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 2 cut(s) 304, 556
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 663, 693
Bsc4I CCNNNNNNNGG 4 cut(s) 254, 310, 371, 372
Bse1I ACTGG 2 cut(s) 738, 1101
Bse3DI GCAATG 4 cut(s) 304, 555, 641, 807
BseBI CCWGG 1 cut(s) 1170
BseDI CCNNGG 2 cut(s) 304, 556
BseGI GGATG 2 cut(s) 883, 1145
BseLI CCNNNNNNNGG 4 cut(s) 254, 310, 371, 372
BseMI GCAATG 4 cut(s) 304, 555, 641, 807
BseMII CTCAG 1 cut(s) 247
BseNI ACTGG 2 cut(s) 738, 1101
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 3 cut(s) 557, 614, 935
BseYI CCCAGC 1 cut(s) 540
BsgI GTGCAG 1 cut(s) 1129
BsiSI CCGG 1 cut(s) 101
BslFI GGGAC 3 cut(s) 98, 324, 1160
BslI CCNNNNNNNGG 4 cut(s) 254, 310, 371, 372
BsmAI GTCTC 2 cut(s) 725, 922
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 3 cut(s) 98, 324, 1160
Bsp143I GATC 6 cut(s) 15, 88, 172, 197, 501, 815
Bsp19I CCATGG 1 cut(s) 304
BspACI CCGC 3 cut(s) 311, 735, 868
BspCNI CTCAG 1 cut(s) 246
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 1 cut(s) 1101
BspPI GGATC 1 cut(s) 192
BsrDI GCAATG 4 cut(s) 304, 555, 641, 807
BsrI ACTGG 2 cut(s) 738, 1101
BssECI CCNNGG 2 cut(s) 304, 556
BssMI GATC 6 cut(s) 15, 88, 172, 197, 501, 815
BssNI GRCGYC 1 cut(s) 510
BssSI CACGAG 1 cut(s) 762
BssT1I CCWWGG 2 cut(s) 304, 556
Bst2BI CACGAG 1 cut(s) 762
Bst2UI CCWGG 1 cut(s) 1170
Bst4CI ACNGT 2 cut(s) 169, 338
Bst6I CTCTTC 3 cut(s) 131, 245, 957
BstACI GRCGYC 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 840, 1290
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 1 cut(s) 304
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 883, 1145
BstKTI GATC 6 cut(s) 18, 91, 175, 200, 504, 818
BstMAI GTCTC 2 cut(s) 725, 922
BstMBI GATC 6 cut(s) 15, 88, 172, 197, 501, 815
BstMWI GCNNNNNNNGC 4 cut(s) 740, 806, 929, 1116
BstNI CCWGG 1 cut(s) 1170
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 1 cut(s) 1168
BstSFI CTRYAG 2 cut(s) 585, 921
BstV1I GCAGC 3 cut(s) 557, 614, 935
BstX2I RGATCY 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 895
BstYI RGATCY 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 2 cut(s) 883, 1145
BtsIMutI CAGTG 2 cut(s) 561, 745
BveI ACCTGC 1 cut(s) 1101
Cac8I GCNNGC 2 cut(s) 840, 1290
CaiI CAGNNNCTG 1 cut(s) 608
CseI GACGC 2 cut(s) 518, 815
Csp6I GTAC 2 cut(s) 144, 1098
CviAII CATG 6 cut(s) 305, 844, 865, 1055, 1155, 1258
CviQI GTAC 2 cut(s) 144, 1098
DdeI CTNAG 1 cut(s) 233
DpnI GATC 6 cut(s) 17, 90, 174, 199, 503, 817
DpnII GATC 6 cut(s) 15, 88, 172, 197, 501, 815
DraI TTTAAA 2 cut(s) 997, 1245
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 3 cut(s) 131, 245, 957
EarI CTCTTC 3 cut(s) 131, 245, 957
Eco130I CCWWGG 2 cut(s) 304, 556
Eco32I GATATC 1 cut(s) 1033
Eco57I CTGAAG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 1168
EcoRV GATATC 1 cut(s) 1033
EcoT14I CCWWGG 2 cut(s) 304, 556
EcoT22I ATGCAT 1 cut(s) 1300
ErhI CCWWGG 2 cut(s) 304, 556
Esp3I CGTCTC 1 cut(s) 725
FaeI CATG 6 cut(s) 308, 847, 868, 1058, 1158, 1261
FaqI GGGAC 3 cut(s) 98, 324, 1160
FatI CATG 6 cut(s) 304, 843, 864, 1054, 1154, 1257
FauNDI CATATG 1 cut(s) 1294
FbaI TGATCA 3 cut(s) 15, 88, 172
Fnu4HI GCNGC 5 cut(s) 312, 546, 603, 735, 924
FokI GGATG 2 cut(s) 870, 1152
Fsp4HI GCNGC 5 cut(s) 312, 546, 603, 735, 924
FspBI CTAG 1 cut(s) 440
GluI GCNGC 5 cut(s) 312, 546, 603, 735, 924
GsaI CCCAGC 1 cut(s) 544
HapII CCGG 1 cut(s) 101
HgaI GACGC 2 cut(s) 518, 815
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 6 cut(s) 308, 847, 868, 1058, 1158, 1261
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HindIII AAGCTT 2 cut(s) 203, 958
HinfI GANTC 2 cut(s) 407, 1186
HpaII CCGG 1 cut(s) 101
HphI GGTGA 3 cut(s) 47, 167, 1229
Hpy166II GTNNAC 3 cut(s) 334, 470, 613
Hpy188I TCNGA 3 cut(s) 210, 226, 524
Hpy188III TCNNGA 3 cut(s) 813, 1183, 1237
Hpy8I GTNNAC 3 cut(s) 334, 470, 613
HpyAV CCTTC 3 cut(s) 523, 974, 1214
HpyCH4III ACNGT 2 cut(s) 169, 338
HpyCH4IV ACGT 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 740, 806, 929, 1116
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 1 cut(s) 718
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 6 cut(s) 308, 847, 868, 1058, 1158, 1261
Ksp22I TGATCA 3 cut(s) 15, 88, 172
Kzo9I GATC 6 cut(s) 15, 88, 172, 197, 501, 815
Lsp1109I GCAGC 3 cut(s) 557, 614, 935
LweI GCATC 5 cut(s) 614, 818, 892, 934, 1307
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 718
MaeIII GTNAC 3 cut(s) 775, 964, 1159
MalI GATC 6 cut(s) 17, 90, 174, 199, 503, 817
MboI GATC 6 cut(s) 15, 88, 172, 197, 501, 815
MboII GAAGA 7 cut(s) 118, 232, 270, 944, 1037, 1070, 1262
MfeI CAATTG 1 cut(s) 477
MflI RGATCY 1 cut(s) 197
MluCI AATT 8 cut(s) 30, 386, 477, 590, 992, 1132, 1191, 1266
MmeI TCCRAC 2 cut(s) 605, 782
MnlI CCTC 5 cut(s) 63, 86, 242, 248, 715
Mph1103I ATGCAT 1 cut(s) 1300
MseI TTAA 4 cut(s) 893, 996, 1064, 1244
MslI CAYNNNNRTG 2 cut(s) 893, 1229
MspI CCGG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 1170
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 1170
MwoI GCNNNNNNNGC 4 cut(s) 740, 806, 929, 1116
NcoI CCATGG 1 cut(s) 304
NdeI CATATG 1 cut(s) 1294
NdeII GATC 6 cut(s) 15, 88, 172, 197, 501, 815
NlaIII CATG 6 cut(s) 308, 847, 868, 1058, 1158, 1261
NmuCI GTSAC 2 cut(s) 775, 1159
NsiI ATGCAT 1 cut(s) 1300
NspI RCATGY 1 cut(s) 868
PfeI GAWTC 2 cut(s) 407, 1186
PkrI GCNGC 5 cut(s) 313, 547, 604, 736, 925
Psp6I CCWGG 1 cut(s) 1168
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 1 cut(s) 1168
PstI CTGCAG 1 cut(s) 925
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 1 cut(s) 197
RsaI GTAC 2 cut(s) 145, 1099
RsaNI GTAC 2 cut(s) 144, 1098
RseI CAYNNNNRTG 2 cut(s) 893, 1229
SaqAI TTAA 4 cut(s) 893, 996, 1064, 1244
SatI GCNGC 5 cut(s) 312, 546, 603, 735, 924
Sau3AI GATC 6 cut(s) 15, 88, 172, 197, 501, 815
ScaI AGTACT 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 1170
SetI ASST 9 cut(s) 63, 78, 207, 542, 721, 784, 962, 1115, 1174
SfaNI GCATC 5 cut(s) 614, 818, 892, 934, 1307
SfcI CTRYAG 2 cut(s) 585, 921
SmiMI CAYNNNNRTG 2 cut(s) 893, 1229
SmlI CTYRAG 2 cut(s) 722, 1237
SmoI CTYRAG 2 cut(s) 722, 1237
SpeI ACTAGT 1 cut(s) 439
Sse9I AATT 8 cut(s) 30, 386, 477, 590, 992, 1132, 1191, 1266
SsiI CCGC 3 cut(s) 311, 735, 868
SspI AATATT 3 cut(s) 264, 662, 712
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 1168
StyI CCWWGG 2 cut(s) 304, 556
TaaI ACNGT 2 cut(s) 169, 338
TaiI ACGT 1 cut(s) 721
TasI AATT 8 cut(s) 30, 386, 477, 590, 992, 1132, 1191, 1266
TatI WGTACW 1 cut(s) 143
TauI GCSGC 2 cut(s) 314, 737
TfiI GAWTC 2 cut(s) 407, 1186
Tru1I TTAA 4 cut(s) 893, 996, 1064, 1244
Tru9I TTAA 4 cut(s) 893, 996, 1064, 1244
TscAI CASTG 2 cut(s) 568, 745
TseFI GTSAC 2 cut(s) 775, 1159
TseI GCWGC 3 cut(s) 545, 602, 923
Tsp45I GTSAC 2 cut(s) 775, 1159
TspDTI ATGAA 3 cut(s) 207, 520, 1071
TspRI CASTG 2 cut(s) 568, 745
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 2 cut(s) 590, 992
XceI RCATGY 1 cut(s) 868
XspI CTAG 1 cut(s) 440
ZrmI AGTACT 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.