Rorug01G0080700

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000200
Physical Location & Seq
Forward (+)
13106610 .. 13107002
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0080700.1

Sequence Viewer

Length: 393 bp
ATGTACGATAAGGATCCATGGGGCGGCGCGCTGGAGATCAACACGGCGGACTCGGCCACCGACGACGACCGCAGCCGGAACCTTCAGGACCTCGACCAGGCGGCGCTGTCGTCTCGGCCGCTCGACGAGACGCAACAGAGCTGGCTGTTGGGCCCCACCGGGGAGCAAAAGAAGAAGAAGTACGTGGATCTGGGATGCGTCATCGTCAGCCGCAAGATCTTTATCTGGACGGTAAGGACGATTCTCCTCTCCGGCTTGCTCGCCGGACTGATCGTCCTCATCGTCAAGACCGTGCCGCGTCACCACAATGCCAAGCCTCCTCCGGACAACTACACTCGCTCTCCACAAGGCTCTCATGTTCTTCAACGCTCAGAAATGTCAGTTTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

130

Amino Acids

14.59

Weight (kDa)

7.87

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 121
AccII CGCG 2 cut(s) 29, 298
AccIII TCCGGA 1 cut(s) 322
AciI CCGC 7 cut(s) 24, 47, 70, 101, 119, 211, 296
AclWI GGATC 3 cut(s) 8, 21, 195
AcoI YGGCCR 2 cut(s) 54, 116
AcuI CTGAAG 1 cut(s) 68
AfaI GTAC 2 cut(s) 5, 182
AfiI CCNNNNNNNGG 3 cut(s) 23, 97, 160
AgsI TTSAA 1 cut(s) 365
AhdI GACNNNNNGTC 1 cut(s) 272
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 117, 122
AlwI GGATC 3 cut(s) 8, 21, 195
Aor13HI TCCGGA 1 cut(s) 322
AoxI GGCC 3 cut(s) 54, 116, 151
ApaI GGGCCC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 72
AspLEI GCGC 3 cut(s) 29, 31, 106
AspS9I GGNCC 3 cut(s) 88, 151, 152
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 293
AvaII GGWCC 1 cut(s) 88
BaeGI GKGCMC 1 cut(s) 155
BamHI GGATCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 164, 196
BbvI GCAGC 1 cut(s) 84
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 117, 122
BfoI RGCGCY 1 cut(s) 107
BglII AGATCT 1 cut(s) 216
BisI GCNGC 6 cut(s) 25, 73, 102, 119, 211, 296
BlsI GCNGC 6 cut(s) 26, 74, 103, 120, 212, 297
Bme1390I CCNGG 2 cut(s) 98, 160
Bme18I GGWCC 1 cut(s) 88
BmeRI GACNNNNNGTC 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 88, 151, 152
BmiI GGNNCC 4 cut(s) 15, 80, 153, 154
BmrFI CCNGG 2 cut(s) 98, 160
BmsI GCATC 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 53
BpuMI CCSGG 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 184
BsaBI GATNNNNATC 2 cut(s) 12, 221
BsaJI CCNNGG 2 cut(s) 17, 159
BsaWI WCCGGW 1 cut(s) 322
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bsc4I CCNNNNNNNGG 3 cut(s) 23, 97, 160
Bse8I GATNNNNATC 2 cut(s) 12, 221
BseAI TCCGGA 1 cut(s) 322
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 17, 159
BseGI GGATG 1 cut(s) 200
BseJI GATNNNNATC 2 cut(s) 12, 221
BseLI CCNNNNNNNGG 3 cut(s) 23, 97, 160
BseMII CTCAG 1 cut(s) 384
BsePI GCGCGC 1 cut(s) 27
BseRI GAGGAG 2 cut(s) 236, 309
BseSI GKGCMC 1 cut(s) 155
BseX3I CGGCCG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 2 cut(s) 29, 298
Bsh1285I CGRYCG 2 cut(s) 70, 119
BshFI GGCC 3 cut(s) 56, 118, 153
BsiEI CGRYCG 2 cut(s) 70, 119
BsiSI CCGG 5 cut(s) 76, 159, 252, 264, 323
BslI CCNNNNNNNGG 3 cut(s) 23, 97, 160
BsmAI GTCTC 2 cut(s) 117, 122
BsmBI CGTCTC 2 cut(s) 117, 122
BsnI GGCC 3 cut(s) 56, 118, 153
Bsp120I GGGCCC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 322
Bsp143I GATC 5 cut(s) 13, 36, 187, 216, 270
Bsp19I CCATGG 1 cut(s) 17
BspACI CCGC 7 cut(s) 24, 47, 70, 101, 119, 211, 296
BspANI GGCC 3 cut(s) 56, 118, 153
BspCNI CTCAG 1 cut(s) 383
BspEI TCCGGA 1 cut(s) 322
BspFNI CGCG 2 cut(s) 29, 298
BspLI GGNNCC 4 cut(s) 15, 80, 153, 154
BspPI GGATC 3 cut(s) 8, 21, 195
BsrBI CCGCTC 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 17, 159
BssHII GCGCGC 1 cut(s) 27
BssMI GATC 5 cut(s) 13, 36, 187, 216, 270
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 232, 292
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 4 cut(s) 29, 143, 257, 261
BstDEI CTNAG 1 cut(s) 370
BstDSI CCRYGG 1 cut(s) 17
BstENI CCTNNNNNAGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 200
BstFNI CGCG 2 cut(s) 29, 298
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 3 cut(s) 29, 31, 106
BstKTI GATC 5 cut(s) 16, 39, 190, 219, 273
BstMAI GTCTC 2 cut(s) 117, 122
BstMBI GATC 5 cut(s) 13, 36, 187, 216, 270
BstMCI CGRYCG 2 cut(s) 70, 119
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 96, 158
BstSLI GKGCMC 1 cut(s) 155
BstUI CGCG 2 cut(s) 29, 298
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 3 cut(s) 13, 187, 216
BstYI RGATCY 3 cut(s) 13, 187, 216
BstZI CGGCCG 1 cut(s) 116
BsuRI GGCC 3 cut(s) 56, 118, 153
BtgI CCRYGG 1 cut(s) 17
BtsCI GGATG 1 cut(s) 200
Cac8I GCNNGC 4 cut(s) 29, 143, 257, 261
CfoI GCGC 3 cut(s) 29, 31, 106
Cfr13I GGNCC 3 cut(s) 88, 151, 152
CseI GACGC 3 cut(s) 139, 187, 287
Csp6I GTAC 2 cut(s) 4, 181
CviAII CATG 2 cut(s) 18, 356
CviQI GTAC 2 cut(s) 4, 181
DdeI CTNAG 1 cut(s) 370
DpnI GATC 5 cut(s) 15, 38, 189, 218, 272
DpnII GATC 5 cut(s) 13, 36, 187, 216, 270
DriI GACNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 54, 116
EagI CGGCCG 1 cut(s) 116
Eam1105I GACNNNNNGTC 1 cut(s) 272
EciI GGCGGA 1 cut(s) 62
EclXI CGGCCG 1 cut(s) 116
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 68
EcoNI CCTNNNNNAGG 1 cut(s) 95
EcoO109I RGGNCCY 2 cut(s) 88, 152
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 17
Esp3I CGTCTC 2 cut(s) 117, 122
FaeI CATG 2 cut(s) 21, 359
FaiI YATR 2 cut(s) 19, 357
FatI CATG 2 cut(s) 17, 355
Fnu4HI GCNGC 6 cut(s) 25, 73, 102, 119, 211, 296
FokI GGATG 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 6 cut(s) 25, 73, 102, 119, 211, 296
GlaI GCGC 3 cut(s) 28, 30, 105
GluI GCNGC 6 cut(s) 25, 73, 102, 119, 211, 296
GsuI CTGGAG 1 cut(s) 53
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 3 cut(s) 56, 118, 153
HapII CCGG 5 cut(s) 76, 159, 252, 264, 323
HgaI GACGC 3 cut(s) 139, 187, 287
HhaI GCGC 3 cut(s) 29, 31, 106
Hin1II CATG 2 cut(s) 21, 359
Hin6I GCGC 3 cut(s) 27, 29, 104
HinP1I GCGC 3 cut(s) 27, 29, 104
HinfI GANTC 2 cut(s) 50, 241
HpaII CCGG 5 cut(s) 76, 159, 252, 264, 323
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 1 cut(s) 373
Hpy188III TCNNGA 4 cut(s) 86, 226, 286, 323
Hpy99I CGWCG 3 cut(s) 65, 68, 128
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 232, 292
HpyCH4IV ACGT 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 370
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 2 cut(s) 21, 359
HspAI GCGC 3 cut(s) 27, 29, 104
Kpn2I TCCGGA 1 cut(s) 322
Kzo9I GATC 5 cut(s) 13, 36, 187, 216, 270
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 185
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 299
MalI GATC 5 cut(s) 15, 38, 189, 218, 272
MbiI CCGCTC 1 cut(s) 121
MboI GATC 5 cut(s) 13, 36, 187, 216, 270
MboII GAAGA 3 cut(s) 184, 187, 353
MflI RGATCY 3 cut(s) 13, 187, 216
MhlI GDGCHC 1 cut(s) 155
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 5 cut(s) 101, 257, 287, 327, 330
MroI TCCGGA 1 cut(s) 322
MslI CAYNNNNRTG 1 cut(s) 306
MspI CCGG 5 cut(s) 76, 159, 252, 264, 323
MspR9I CCNGG 2 cut(s) 98, 160
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 2 cut(s) 29, 298
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 160
NcoI CCATGG 1 cut(s) 17
NdeII GATC 5 cut(s) 13, 36, 187, 216, 270
NlaIII CATG 2 cut(s) 21, 359
NlaIV GGNNCC 4 cut(s) 15, 80, 153, 154
NmeAIII GCCGAG 2 cut(s) 32, 94
NmuCI GTSAC 1 cut(s) 299
PauI GCGCGC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 3 cut(s) 236, 279, 288
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 6 cut(s) 26, 74, 103, 120, 212, 297
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 184
PpuMI RGGWCCY 1 cut(s) 88
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 15, 80, 153, 154
PspOMI GGGCCC 1 cut(s) 151
PspPI GGNCC 3 cut(s) 88, 151, 152
PspPPI RGGWCCY 1 cut(s) 88
PsuI RGATCY 3 cut(s) 13, 187, 216
PteI GCGCGC 1 cut(s) 27
RsaI GTAC 2 cut(s) 5, 182
RsaNI GTAC 2 cut(s) 4, 181
RseI CAYNNNNRTG 1 cut(s) 306
SatI GCNGC 6 cut(s) 25, 73, 102, 119, 211, 296
Sau3AI GATC 5 cut(s) 13, 36, 187, 216, 270
Sau96I GGNCC 3 cut(s) 88, 151, 152
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 2 cut(s) 98, 160
SduI GDGCHC 1 cut(s) 155
SetI ASST 4 cut(s) 84, 93, 143, 186
SfaNI GCATC 1 cut(s) 185
SinI GGWCC 1 cut(s) 88
SmiMI CAYNNNNRTG 1 cut(s) 306
SsiI CCGC 7 cut(s) 24, 47, 70, 101, 119, 211, 296
StyD4I CCNGG 2 cut(s) 96, 158
StyI CCWWGG 1 cut(s) 17
TaaI ACNGT 2 cut(s) 232, 292
TaiI ACGT 1 cut(s) 186
TaqI TCGA 2 cut(s) 93, 123
TauI GCSGC 5 cut(s) 27, 104, 121, 213, 298
TfiI GAWTC 1 cut(s) 241
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 88
XagI CCTNNNNNAGG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.