MD10G1200000.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000200
Physical Location & Seq
Reverse (-)
29809176 .. 29809733
558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1200000.v1.1.491

Sequence Viewer

Length: 558 bp
ATGGAAGCATCAAAATCAAAATTCAGGTCAATAAGGCCATCTGCTTGGTGTCGCACGGTGAGCATGCGAAACTTGTTGGTGCGGCCCTCGGCAGAAAAATTATTGGGAAATCTTGTGGGGAAGTTTATAGCAAAGGCCGGAGAAAGTGAAGTCATGGGTCTTGACCTTCAAAGCTTTGTTGGTAAGTTGAGGAAAGGCATTGAGGAGTTCAAAGTAAAATATGCTAATAAAGTTACCGGGGATGCATGTGAGTCCTTGAAAGAGTATGGGGACCTCTTACAGAGGGATGATATAGAAATCTATACCTGCAGGAGTTGGTGCAGGTTTCCCTTCTACGCAGCCGATTTTGGATGGGGAAAGCCATCGTGGGTGAATCAGAGTCTCGAAGGCAAGAATTTGATTGTGCTGATGGATGTGCGAGATGGAGATGGTGTTGAAGTGTCCTTAACTTTTAATGAAGAAGACATGGCCATAATTGAAAGCAATAAGGAGCTGCTTGCACGTGCTTCTCTCGGTCGGAATCTTATTCTTCAAAAAGATGTTGCCCTTGTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

186

Amino Acids

20.79

Weight (kDa)

7.58

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 10 - 165 3.2e-20 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 312, 314
AciI CCGC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 2 cut(s) 20, 394
AcvI CACGTG 1 cut(s) 503
AgsI TTSAA 6 cut(s) 170, 211, 259, 437, 479, 533
AluBI AGCT 2 cut(s) 174, 493
AluI AGCT 2 cut(s) 174, 493
Alw26I GTCTC 1 cut(s) 386
AoxI GGCC 4 cut(s) 35, 83, 135, 468
ApeKI GCWGC 2 cut(s) 338, 493
ApoI RAATTY 2 cut(s) 20, 394
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspS9I GGNCC 2 cut(s) 84, 271
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 2 cut(s) 70, 382
AvaII GGWCC 1 cut(s) 271
BalI TGGCCA 1 cut(s) 470
BbrPI CACGTG 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 350, 480
BccI CCATC 6 cut(s) 46, 345, 370, 403, 416, 422
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 2 cut(s) 312, 314
BisI GCNGC 3 cut(s) 83, 339, 494
BlsI GCNGC 3 cut(s) 84, 340, 495
Bme1390I CCNGG 1 cut(s) 238
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 84, 271
BmiI GGNNCC 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 17, 232
BpiI GAAGAC 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 87, 237
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
BseDI CCNNGG 2 cut(s) 87, 237
BseGI GGATG 4 cut(s) 247, 292, 356, 418
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 2 cut(s) 350, 480
BsgI GTGCAG 1 cut(s) 340
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 4 cut(s) 37, 85, 137, 470
BsiEI CGRYCG 1 cut(s) 517
BsiSI CCGG 2 cut(s) 138, 237
BslFI GGGAC 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 4 cut(s) 37, 85, 137, 470
BspACI CCGC 1 cut(s) 82
BspANI GGCC 4 cut(s) 37, 85, 137, 470
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 311
BspMI ACCTGC 2 cut(s) 312, 314
BssECI CCNNGG 2 cut(s) 87, 237
Bst4CI ACNGT 1 cut(s) 58
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 65, 498
BstF5I GGATG 4 cut(s) 247, 292, 356, 418
BstMAI GTCTC 1 cut(s) 386
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNSI RCATGY 2 cut(s) 67, 249
BstSCI CCNGG 1 cut(s) 236
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 350, 480
BstV2I GAAGAC 1 cut(s) 468
BstXI CCANNNNNNTGG 1 cut(s) 45
BsuRI GGCC 4 cut(s) 37, 85, 137, 470
BtsCI GGATG 4 cut(s) 247, 292, 356, 418
BveI ACCTGC 2 cut(s) 312, 314
Cac8I GCNNGC 2 cut(s) 65, 498
Cfr13I GGNCC 2 cut(s) 84, 271
CviAII CATG 4 cut(s) 64, 154, 246, 466
CviJI RGCY 8 cut(s) 37, 85, 137, 174, 341, 361, 470, 493
CviKI_1 RGCY 8 cut(s) 37, 85, 137, 174, 341, 361, 470, 493
EaeI YGGCCR 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 271
Eco72I CACGTG 1 cut(s) 503
EcoO109I RGGNCCY 1 cut(s) 271
EcoT22I ATGCAT 1 cut(s) 247
FaeI CATG 4 cut(s) 67, 157, 249, 469
FaqI GGGAC 1 cut(s) 284
FatI CATG 4 cut(s) 63, 153, 245, 465
Fnu4HI GCNGC 3 cut(s) 83, 339, 494
FokI GGATG 4 cut(s) 254, 299, 363, 425
Fsp4HI GCNGC 3 cut(s) 83, 339, 494
GluI GCNGC 3 cut(s) 83, 339, 494
HaeIII GGCC 4 cut(s) 37, 85, 137, 470
HapII CCGG 2 cut(s) 138, 237
Hin1II CATG 4 cut(s) 67, 157, 249, 469
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 4 cut(s) 251, 373, 379, 520
HpaII CCGG 2 cut(s) 138, 237
HphI GGTGA 2 cut(s) 70, 382
Hpy188I TCNGA 2 cut(s) 378, 519
Hpy188III TCNNGA 2 cut(s) 161, 383
HpyAV CCTTC 3 cut(s) 176, 340, 380
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 502
HpyCH4V TGCA 4 cut(s) 245, 309, 321, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 4 cut(s) 67, 157, 249, 469
LmnI GCTCC 1 cut(s) 490
LpnPI CCDG 6 cut(s) 10, 151, 250, 295, 307, 319
Lsp1109I GCAGC 2 cut(s) 350, 480
LweI GCATC 2 cut(s) 17, 232
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 232
MboII GAAGA 3 cut(s) 470, 473, 521
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 4 cut(s) 20, 98, 394, 474
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 2 cut(s) 260, 388
MmeI TCCRAC 1 cut(s) 497
MnlI CCTC 5 cut(s) 97, 183, 196, 276, 284
Mox20I TGGCCA 1 cut(s) 470
Mph1103I ATGCAT 1 cut(s) 247
MscI TGGCCA 1 cut(s) 470
MseI TTAA 2 cut(s) 446, 453
Msp20I TGGCCA 1 cut(s) 470
MspI CCGG 2 cut(s) 138, 237
MspR9I CCNGG 1 cut(s) 238
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 238
NlaIII CATG 4 cut(s) 67, 157, 249, 469
NlaIV GGNNCC 1 cut(s) 272
NmeAIII GCCGAG 1 cut(s) 68
NsiI ATGCAT 1 cut(s) 247
NspI RCATGY 2 cut(s) 67, 249
PaeI GCATGC 1 cut(s) 67
PfeI GAWTC 2 cut(s) 373, 520
PkrI GCNGC 3 cut(s) 84, 340, 495
PleI GAGTC 2 cut(s) 259, 387
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
PpsI GAGTC 2 cut(s) 259, 387
Ppu21I YACGTR 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspCI CACGTG 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 272
PspPI GGNCC 2 cut(s) 84, 271
PspPPI RGGWCCY 1 cut(s) 271
PstI CTGCAG 1 cut(s) 311
SaqAI TTAA 2 cut(s) 446, 453
SatI GCNGC 3 cut(s) 83, 339, 494
Sau96I GGNCC 2 cut(s) 84, 271
SbfI CCTGCAGG 1 cut(s) 311
SchI GAGTC 2 cut(s) 260, 388
ScrFI CCNGG 1 cut(s) 238
SdaI CCTGCAGG 1 cut(s) 311
SetI ASST 8 cut(s) 29, 168, 176, 276, 308, 326, 495, 505
SfaNI GCATC 2 cut(s) 17, 232
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 271
SphI GCATGC 1 cut(s) 67
Sse8387I CCTGCAGG 1 cut(s) 311
Sse9I AATT 4 cut(s) 20, 98, 394, 474
SsiI CCGC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 236
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 505
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 503
TasI AATT 4 cut(s) 20, 98, 394, 474
TauI GCSGC 1 cut(s) 85
TfiI GAWTC 2 cut(s) 373, 520
Tru1I TTAA 2 cut(s) 446, 453
Tru9I TTAA 2 cut(s) 446, 453
TseI GCWGC 2 cut(s) 338, 493
TspDTI ATGAA 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 2 cut(s) 20, 394
XceI RCATGY 2 cut(s) 67, 249
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.