Rw5G018170

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000200
Physical Location & Seq
Reverse (-)
23493219 .. 23500323
7105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018170.1

Sequence Viewer

Length: 1269 bp
ATGGACTTAGAGGTGAAGATTGAAGTTTTTCACAAAGAAAGAATTACACCATCCTCCCCAACTCCTCACCACCTTAGAAATTTCAGCCTCTCAGTTTTTGATCAGTTTTCTCCTACAATATATTTCCCTCTAATCACTACTACAAAAAGGTCATCAGACGACGGTGATTTTCTGTTAACCAAGCTTCTAAAAAGATCACTATCCGGAACCCTAAGTCGCTTCTACCCCTTCGCAAGAGGAATCCACGATCATTCTTCAGTCTCTTGCAATGACAAGGGAGCTATGTTTCTTGAAGCTCAGGTCAACTGTCCTATATCAAGGGCTTTGGAGAAATCTGACCTTGATTTTGTAAAAAAGTTGATTCCTAATTTACAATCTACTGAAGGAGACACCGGCCATGATCTTCTACTAGTCCAGATAAACTTCTTTGAATGTGGTGGAATCACAATCGGATTCAACGTTTCACATAAGATCATGGATGCCTTCACACTCAGCACATTCATTAATAGTTGGTCTGCAACTTCCCGTGGTTTGCAACTTCCTCCACATCAATATTTTTCTGTAGCTACTTGTTTCCCACCACTGGATTTGTTCCAACCGCAGCCACCTTTTTTGAAGATTGCTAAAGAAAGGTGTACAATAAGGAGATTCTTGTTTGAATCCTCGAAGATTGAATCTCTGAAGTCCAAAGCTGCCAGTGTTGCCGTGCAAAATCCTACGCAAGTCGAAGTTGTTTTAGCACTGATTTGGAAATGTGCAATGAAAGCATCAACTGCAAACTTGAATTCTGCAAGACCATCATCATCAACATGGTTGCAAGTACTTGCGAACATAAGGAAAATATTGTCACAACCATCTGCGGAGAACTTGATGGGAAACCTTTTGGGTTTCTTTGCAGCAATATCAACGAAAGGAGAAAGTAAGGGTGATCTTCAAGGCCTGGTGAAGTATGGTACTAATGGTGTTGGTGTGGATGATGTAAGTAAACTCCTGAAAGGGTATGGGGAGTTTTTGCAAAAGTGTGATATAGAGTGCTATTGCTCCACCAGTTGGTGCTGGTTGCCTTTTTATGAAACCAATTTTGGATGGGGAAAGCCATTGATGTGTAATCCTACAATGGTAGAAATCAAGAATTTGGTTGCGTTGAGAGCTACCAGTGATGGACGTGGCATAGAAGCACGGTTGACTTTAAAAGAAGAAGACATGGCCATATTTGAAAAAAATGAGGAGCTGCTTGCATATGCTTCTTTGAATCCAACTGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

422

Amino Acids

47.0

Weight (kDa)

7.94

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 411 1.8e-71 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1050
AccIII TCCGGA 1 cut(s) 203
AciI CCGC 2 cut(s) 599, 860
AclI AACGTT 1 cut(s) 459
AcoI YGGCCR 2 cut(s) 394, 1206
AcsI RAATTY 3 cut(s) 79, 784, 1132
AcuI CTGAAG 3 cut(s) 240, 402, 701
AfaI GTAC 3 cut(s) 637, 822, 955
AfiI CCNNNNNNNGG 2 cut(s) 583, 1050
AhlI ACTAGT 1 cut(s) 409
AjiI CACGTC 1 cut(s) 1166
AjnI CCWGG 1 cut(s) 939
AjuI GAANNNNNNNTTGG 2 cut(s) 1065, 1097
AluBI AGCT 7 cut(s) 184, 281, 296, 566, 692, 1151, 1231
AluI AGCT 7 cut(s) 184, 281, 296, 566, 692, 1151, 1231
Alw26I GTCTC 2 cut(s) 265, 381
Aor13HI TCCGGA 1 cut(s) 203
AoxI GGCC 3 cut(s) 394, 937, 1206
ApeKI GCWGC 4 cut(s) 601, 692, 896, 1231
ApoI RAATTY 3 cut(s) 79, 784, 1132
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 5 cut(s) 25, 59, 176, 938, 955
BalI TGGCCA 1 cut(s) 1208
BbsI GAAGAC 1 cut(s) 1206
BbvI GCAGC 4 cut(s) 613, 679, 908, 1218
BccI CCATC 6 cut(s) 58, 805, 862, 865, 1080, 1154
BceAI ACGGC 1 cut(s) 689
BciT130I CCWGG 1 cut(s) 941
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 265, 381
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 561
BisI GCNGC 4 cut(s) 602, 693, 897, 1232
BlsI GCNGC 4 cut(s) 603, 694, 898, 1233
BmcAI AGTACT 1 cut(s) 822
Bme1390I CCNGG 1 cut(s) 941
BmgBI CACGTC 1 cut(s) 1166
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 941
BmsI GCATC 2 cut(s) 469, 776
BpiI GAAGAC 1 cut(s) 1206
Bpu10I CCTNAGC 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 526
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 2 cut(s) 583, 1050
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 4 cut(s) 588, 696, 1047, 1155
Bse3DI GCAATG 2 cut(s) 274, 765
Bse8I GATNNNNATC 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 203
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 1 cut(s) 526
BseGI GGATG 4 cut(s) 50, 484, 979, 1091
BseJI GATNNNNATC 1 cut(s) 199
BseLI CCNNNNNNNGG 2 cut(s) 583, 1050
BseMI GCAATG 2 cut(s) 274, 765
BseMII CTCAG 3 cut(s) 105, 311, 505
BseNI ACTGG 4 cut(s) 588, 696, 1047, 1155
BseRI GAGGAG 2 cut(s) 54, 1241
BseXI GCAGC 4 cut(s) 613, 679, 908, 1218
BshFI GGCC 3 cut(s) 396, 939, 1208
BsiSI CCGG 2 cut(s) 204, 393
BslI CCNNNNNNNGG 2 cut(s) 583, 1050
BsmAI GTCTC 2 cut(s) 265, 381
BsnI GGCC 3 cut(s) 396, 939, 1208
Bsp13I TCCGGA 1 cut(s) 203
Bsp1407I TGTACA 1 cut(s) 635
Bsp143I GATC 6 cut(s) 100, 194, 247, 400, 471, 928
BspACI CCGC 2 cut(s) 599, 860
BspANI GGCC 3 cut(s) 396, 939, 1208
BspCNI CTCAG 3 cut(s) 104, 310, 504
BspEI TCCGGA 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 274, 765
BsrFI RCCGGY 1 cut(s) 392
BsrGI TGTACA 1 cut(s) 635
BsrI ACTGG 4 cut(s) 588, 696, 1047, 1155
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 526
BssMI GATC 6 cut(s) 100, 194, 247, 400, 471, 928
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 4 cut(s) 164, 308, 1182, 1261
BstAPI GCANNNNNTGC 1 cut(s) 773
BstAUI TGTACA 1 cut(s) 635
BstC8I GCNNGC 1 cut(s) 1236
BstDEI CTNAG 6 cut(s) 7, 74, 91, 212, 297, 491
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 4 cut(s) 50, 484, 979, 1091
BstKTI GATC 6 cut(s) 103, 197, 250, 403, 474, 931
BstMAI GTCTC 2 cut(s) 265, 381
BstMBI GATC 6 cut(s) 100, 194, 247, 400, 471, 928
BstMWI GCNNNNNNNGC 4 cut(s) 701, 764, 773, 1148
BstNI CCWGG 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 939
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 4 cut(s) 613, 679, 908, 1218
BstV2I GAAGAC 1 cut(s) 1206
BsuRI GGCC 3 cut(s) 396, 939, 1208
BtgI CCRYGG 1 cut(s) 526
BtrI CACGTC 1 cut(s) 1166
BtsCI GGATG 4 cut(s) 50, 484, 979, 1091
BtsIMutI CAGTG 4 cut(s) 581, 703, 740, 1162
Cac8I GCNNGC 1 cut(s) 1236
Cfr10I RCCGGY 1 cut(s) 392
Csp6I GTAC 3 cut(s) 636, 821, 954
CspCI CAANNNNNGTGG 4 cut(s) 570, 594, 605, 629
CviAII CATG 4 cut(s) 398, 475, 810, 1204
CviQI GTAC 3 cut(s) 636, 821, 954
DdeI CTNAG 6 cut(s) 7, 74, 91, 212, 297, 491
DpnI GATC 6 cut(s) 102, 196, 249, 402, 473, 930
DpnII GATC 6 cut(s) 100, 194, 247, 400, 471, 928
DraI TTTAAA 1 cut(s) 1191
EaeI YGGCCR 2 cut(s) 394, 1206
Eco147I AGGCCT 1 cut(s) 939
Eco57I CTGAAG 3 cut(s) 240, 402, 701
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 939
FaeI CATG 4 cut(s) 401, 478, 813, 1207
FatI CATG 4 cut(s) 397, 474, 809, 1203
FauNDI CATATG 1 cut(s) 1240
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 602, 693, 897, 1232
FokI GGATG 4 cut(s) 37, 491, 986, 1098
Fsp4HI GCNGC 4 cut(s) 602, 693, 897, 1232
FspBI CTAG 1 cut(s) 410
GluI GCNGC 4 cut(s) 602, 693, 897, 1232
HaeIII GGCC 3 cut(s) 396, 939, 1208
HapII CCGG 2 cut(s) 204, 393
Hin1II CATG 4 cut(s) 401, 478, 813, 1207
HincII GTYRAC 3 cut(s) 177, 304, 1185
HindII GTYRAC 3 cut(s) 177, 304, 1185
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 8 cut(s) 240, 361, 441, 453, 648, 659, 674, 1252
HpaI GTTAAC 1 cut(s) 177
HpaII CCGG 2 cut(s) 204, 393
HphI GGTGA 5 cut(s) 25, 59, 176, 938, 955
Hpy166II GTNNAC 5 cut(s) 177, 304, 636, 986, 1185
Hpy188I TCNGA 4 cut(s) 157, 337, 452, 681
Hpy188III TCNNGA 5 cut(s) 204, 290, 415, 991, 1129
Hpy8I GTNNAC 5 cut(s) 177, 304, 636, 986, 1185
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 238, 377, 493
HpyCH4III ACNGT 4 cut(s) 164, 308, 1182, 1261
HpyCH4IV ACGT 2 cut(s) 459, 1165
HpyF10VI GCNNNNNNNGC 4 cut(s) 701, 764, 773, 1148
HpyF3I CTNAG 6 cut(s) 7, 74, 91, 212, 297, 491
HpySE526I ACGT 2 cut(s) 459, 1165
Hsp92II CATG 4 cut(s) 401, 478, 813, 1207
Kpn2I TCCGGA 1 cut(s) 203
Ksp22I TGATCA 1 cut(s) 100
KspAI GTTAAC 1 cut(s) 177
Kzo9I GATC 6 cut(s) 100, 194, 247, 400, 471, 928
LmnI GCTCC 3 cut(s) 278, 1046, 1228
Lsp1109I GCAGC 4 cut(s) 613, 679, 908, 1218
LweI GCATC 2 cut(s) 469, 776
MaeI CTAG 1 cut(s) 410
MaeII ACGT 2 cut(s) 459, 1165
MaeIII GTNAC 1 cut(s) 846
MalI GATC 6 cut(s) 102, 196, 249, 402, 473, 930
MboI GATC 6 cut(s) 100, 194, 247, 400, 471, 928
MboII GAAGA 8 cut(s) 28, 246, 395, 628, 679, 923, 1208, 1211
MlsI TGGCCA 1 cut(s) 1208
MluCI AATT 6 cut(s) 42, 79, 367, 784, 1078, 1132
MluNI TGGCCA 1 cut(s) 1208
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 9 cut(s) 4, 64, 75, 98, 138, 230, 552, 673, 1219
Mox20I TGGCCA 1 cut(s) 1208
MroI TCCGGA 1 cut(s) 203
MroXI GAANNNNTTC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 1208
MseI TTAA 3 cut(s) 176, 504, 1190
MslI CAYNNNNRTG 2 cut(s) 808, 1102
Msp20I TGGCCA 1 cut(s) 1208
MspI CCGG 2 cut(s) 204, 393
MspR9I CCNGG 1 cut(s) 941
MvaI CCWGG 1 cut(s) 941
MwoI GCNNNNNNNGC 4 cut(s) 701, 764, 773, 1148
NdeI CATATG 1 cut(s) 1240
NdeII GATC 6 cut(s) 100, 194, 247, 400, 471, 928
NlaIII CATG 4 cut(s) 401, 478, 813, 1207
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 846
PceI AGGCCT 1 cut(s) 939
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 8 cut(s) 240, 361, 441, 453, 648, 659, 674, 1252
PflMI CCANNNNNTGG 1 cut(s) 1050
PkrI GCNGC 4 cut(s) 603, 694, 898, 1233
PshBI ATTAAT 1 cut(s) 504
Psp1406I AACGTT 1 cut(s) 459
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 1 cut(s) 208
RsaI GTAC 3 cut(s) 637, 822, 955
RsaNI GTAC 3 cut(s) 636, 821, 954
RseI CAYNNNNRTG 2 cut(s) 808, 1102
SaqAI TTAA 3 cut(s) 176, 504, 1190
SatI GCNGC 4 cut(s) 602, 693, 897, 1232
Sau3AI GATC 6 cut(s) 100, 194, 247, 400, 471, 928
ScaI AGTACT 1 cut(s) 822
ScrFI CCNGG 1 cut(s) 941
SfaNI GCATC 2 cut(s) 469, 776
SfcI CTRYAG 1 cut(s) 561
SmiMI CAYNNNNRTG 2 cut(s) 808, 1102
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 6 cut(s) 42, 79, 367, 784, 1078, 1132
SseBI AGGCCT 1 cut(s) 939
SsiI CCGC 2 cut(s) 599, 860
SspI AATATT 2 cut(s) 554, 843
SspMI CTAG 1 cut(s) 410
StuI AGGCCT 1 cut(s) 939
StyD4I CCNGG 1 cut(s) 939
TaaI ACNGT 4 cut(s) 164, 308, 1182, 1261
TaiI ACGT 2 cut(s) 462, 1168
TaqI TCGA 2 cut(s) 665, 726
TasI AATT 6 cut(s) 42, 79, 367, 784, 1078, 1132
TatI WGTACW 2 cut(s) 635, 820
TfiI GAWTC 8 cut(s) 240, 361, 441, 453, 648, 659, 674, 1252
Tru1I TTAA 3 cut(s) 176, 504, 1190
Tru9I TTAA 3 cut(s) 176, 504, 1190
TscAI CASTG 4 cut(s) 588, 703, 747, 1162
TseFI GTSAC 1 cut(s) 846
TseI GCWGC 4 cut(s) 601, 692, 896, 1231
Tsp45I GTSAC 1 cut(s) 846
TspDTI ATGAA 3 cut(s) 490, 776, 1086
TspRI CASTG 4 cut(s) 588, 703, 747, 1162
Van91I CCANNNNNTGG 1 cut(s) 1050
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 3 cut(s) 79, 784, 1132
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 1 cut(s) 410
ZrmI AGTACT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.