RLG00000008057

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
25005191 .. 25005716
526 bp
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UTR
Exon/CDS
Intron
RLM00000008057

Sequence Viewer

Length: 420 bp
ATGTGCAATGGACGTATCAAGATCAAACTTGGGTGTTACAAGGCCAGCAATGCTGTTTCTAGCAGCAAACATGAGGAAAGCATTGAGAAATTTAAAGTGAATTATGGTACTGGAGTTAGCGGAGATGATATCTGCCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATAGAAATAACTATACATGTAGCAGTTGGTGCAGGTTTGACTTCTATGAAGCCAATTTTGGGTTGGGAAAGCCATCGTGGGTCACTATGCCAGGTATGCCAATCAAGAATGTAATTATATTGATTGATGCAAAAGATGGTGAAGGCGTAGAAACGTTATTGAGTTGTAAAGAAGACGACATGGCTATAATTGAAACCAATAAGGAGCTGCTTGCATATGCATCTCTCAATCCTATTGCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.51

Weight (kDa)

5.37

Isoelectric Point (pI)

28.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 48 - 128 6.6e-12 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 198
AciI CCGC 1 cut(s) 120
AclI AACGTT 1 cut(s) 329
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 191
AgsI TTSAA 2 cut(s) 145, 368
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 1 cut(s) 382
AluI AGCT 1 cut(s) 382
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 63, 382
ApoI RAATTY 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BbsI GAAGAC 1 cut(s) 354
BbvI GCAGC 2 cut(s) 75, 369
BccI CCATC 2 cut(s) 256, 305
BciT130I CCWGG 1 cut(s) 267
BfaI CTAG 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 198
BisI GCNGC 2 cut(s) 64, 383
BlsI GCNGC 2 cut(s) 65, 384
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 292, 404
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 2 cut(s) 13, 55
BseBI CCWGG 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 2 cut(s) 13, 55
BseNI ACTGG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 75, 369
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 1 cut(s) 21
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 44
BspMI ACCTGC 1 cut(s) 198
BsrDI GCAATG 2 cut(s) 13, 55
BsrI ACTGG 1 cut(s) 115
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 46, 387
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 50, 204, 271
BstNI CCWGG 1 cut(s) 267
BstNSI RCATGY 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 2 cut(s) 75, 369
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 44
BveI ACCTGC 1 cut(s) 198
Cac8I GCNNGC 2 cut(s) 46, 387
Csp6I GTAC 1 cut(s) 108
CviAII CATG 4 cut(s) 71, 152, 192, 355
CviJI RGCY 5 cut(s) 44, 227, 247, 359, 382
CviKI_1 RGCY 5 cut(s) 44, 227, 247, 359, 382
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraI TTTAAA 1 cut(s) 94
Eco32I GATATC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 265
EcoRV GATATC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 397
FaeI CATG 4 cut(s) 74, 155, 195, 358
FatI CATG 4 cut(s) 70, 151, 191, 354
FauNDI CATATG 1 cut(s) 391
Fnu4HI GCNGC 2 cut(s) 64, 383
Fsp4HI GCNGC 2 cut(s) 64, 383
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 64, 383
GsuI CTGGAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 44
Hin1II CATG 4 cut(s) 74, 155, 195, 358
HphI GGTGA 1 cut(s) 326
Hpy188III TCNNGA 2 cut(s) 19, 280
HpyAV CCTTC 1 cut(s) 311
HpyCH4IV ACGT 2 cut(s) 13, 329
HpyCH4V TGCA 5 cut(s) 6, 207, 305, 389, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 204, 271
HpySE526I ACGT 2 cut(s) 13, 329
Hsp92II CATG 4 cut(s) 74, 155, 195, 358
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 5 cut(s) 58, 96, 193, 252, 279
Lsp1109I GCAGC 2 cut(s) 75, 369
LweI GCATC 2 cut(s) 292, 404
MaeI CTAG 1 cut(s) 60
MaeII ACGT 2 cut(s) 13, 329
MaeIII GTNAC 2 cut(s) 35, 256
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 2 cut(s) 167, 359
MluCI AATT 5 cut(s) 89, 100, 229, 288, 363
MnlI CCTC 1 cut(s) 67
Mph1103I ATGCAT 1 cut(s) 397
MseI TTAA 3 cut(s) 93, 161, 418
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 50, 204, 271
NdeI CATATG 1 cut(s) 391
NdeII GATC 1 cut(s) 21
NlaIII CATG 4 cut(s) 74, 155, 195, 358
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 1 cut(s) 195
PciI ACATGT 1 cut(s) 191
PkrI GCNGC 2 cut(s) 65, 384
PscI ACATGT 1 cut(s) 191
Psp1406I AACGTT 1 cut(s) 329
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 93, 161, 418
SatI GCNGC 2 cut(s) 64, 383
Sau3AI GATC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 267
SetI ASST 5 cut(s) 16, 212, 271, 332, 384
SfaNI GCATC 2 cut(s) 292, 404
Sse9I AATT 5 cut(s) 89, 100, 229, 288, 363
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 265
TaiI ACGT 2 cut(s) 16, 332
TasI AATT 5 cut(s) 89, 100, 229, 288, 363
Tru1I TTAA 3 cut(s) 93, 161, 418
Tru9I TTAA 3 cut(s) 93, 161, 418
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 63, 382
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 168, 237
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 195
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XspI CTAG 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.