RchiOBHm_Chr4g0431781

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000200
Physical Location & Seq
Forward (+)
55937229 .. 55938773
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40042

Sequence Viewer

Length: 792 bp
ATGTTCAAGCCAACTACTTTTAAGTGTGGTGCAATTGGCCTTGGCTTATGCCTTGGCTTATGTCTTTCTCACAAGATAGCTGATGCAGCCACATTGAGCACATTCATCAGAAGTTGGGCCAATAATGCTTCTGGGATTGGCCAGAAAGTGGATCCTATATTCAATGCCATGTTAATAACCCCACCAAGAGATATCTCGATGACTCCATCAGATCTTGAAAATCTTAAGATCAGAGAACACAAATCTGCAACAAAGAGGTTTGTATTCAATGGCTCAAAGATTGTTGTTCTTAGGGCCAAAGCACCTTCTGTGAGTGTCAAACAACCGACAAAGATGGAGAGGGTAGCAGCACTCATCTGGAAATGTGCAATGAAGGCTTCAAGGACAAATTTCGGATCCTCATCTAGGCTATCGTCCCTGTACCAAAATGTGAACATTCAAAACAGAATAGTCCCTCCCCTACCAAATAACTCTGTTGGGAAGTTTGTTGGGTCTTTATTGCGAGGGCAGAAGACACATAGGCAGAGCAGTGAAGAATTTTGCAAGAAAGCAAAAAGACTACCACTGAGTGAGGATATTTCAGTAATAAGTGAGCCTCAGAACGAGGCTATAAGAATGCTAACCAGTGATGGCATGGACTTCTATGTGTGCACAAGTTGGTTTAGGTTTCCACTATACGAGGGTGCAGACTTTGGGTGTGGAAAACCAATTTGGGTGAGCTCAGCTATTCCAACAGCCAAGAATATGGTATATCTGATGGATATAAAAGGCCGTGATGGAATGGAGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

263

Amino Acids

29.06

Weight (kDa)

9.75

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 258 7.9e-38 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 148
AclWI GGATC 4 cut(s) 146, 159, 390, 403
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 2 cut(s) 388, 536
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 2 cut(s) 148, 405
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 6 cut(s) 7, 163, 218, 268, 381, 440
AjuI GAANNNNNNNTTGG 2 cut(s) 694, 726
AluBI AGCT 3 cut(s) 80, 720, 725
AluI AGCT 3 cut(s) 80, 720, 725
Alw21I GWGCWC 3 cut(s) 101, 653, 722
Alw44I GTGCAC 1 cut(s) 649
AlwI GGATC 4 cut(s) 146, 159, 390, 403
AoxI GGCC 5 cut(s) 37, 117, 139, 294, 769
ApaLI GTGCAC 1 cut(s) 649
ApeKI GCWGC 2 cut(s) 86, 347
ApoI RAATTY 2 cut(s) 388, 536
AspS9I GGNCC 2 cut(s) 117, 294
AsuHPI GGTGA 1 cut(s) 727
BaeGI GKGCMC 1 cut(s) 653
BalI TGGCCA 1 cut(s) 141
BamHI GGATCC 2 cut(s) 151, 395
BanII GRGCYC 1 cut(s) 722
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 3 cut(s) 101, 653, 722
BbvI GCAGC 2 cut(s) 98, 359
BccI CCATC 5 cut(s) 214, 328, 623, 751, 770
BceAI ACGGC 1 cut(s) 756
BfaI CTAG 1 cut(s) 405
BfrI CTTAAG 1 cut(s) 224
BglII AGATCT 1 cut(s) 211
BisI GCNGC 2 cut(s) 87, 348
BlpI GCTNAGC 1 cut(s) 721
BlsI GCNGC 2 cut(s) 88, 349
BmgT120I GGNCC 2 cut(s) 117, 294
BmiI GGNNCC 2 cut(s) 153, 397
BmsI GCATC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 721
BsaBI GATNNNNATC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 40, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 405
Bse1I ACTGG 1 cut(s) 624
Bse3DI GCAATG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 40, 52
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 2 cut(s) 148, 405
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 3 cut(s) 557, 611, 735
BseNI ACTGG 1 cut(s) 624
BseSI GKGCMC 1 cut(s) 653
BseXI GCAGC 2 cut(s) 98, 359
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 5 cut(s) 39, 119, 141, 296, 771
BsiHKAI GWGCWC 3 cut(s) 101, 653, 722
BslFI GGGAC 2 cut(s) 400, 437
BslI CCNNNNNNNGG 2 cut(s) 148, 405
BsmFI GGGAC 2 cut(s) 400, 437
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 5 cut(s) 39, 119, 141, 296, 771
Bsp1286I GDGCHC 3 cut(s) 101, 653, 722
Bsp143I GATC 4 cut(s) 151, 211, 228, 395
Bsp1720I GCTNAGC 1 cut(s) 721
BspANI GGCC 5 cut(s) 39, 119, 141, 296, 771
BspCNI CTCAG 3 cut(s) 558, 610, 734
BspLI GGNNCC 2 cut(s) 153, 397
BspPI GGATC 4 cut(s) 146, 159, 390, 403
BspTI CTTAAG 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 1 cut(s) 624
BssECI CCNNGG 2 cut(s) 40, 52
BssMI GATC 4 cut(s) 151, 211, 228, 395
BssT1I CCWWGG 2 cut(s) 40, 52
BstAFI CTTAAG 1 cut(s) 224
BstDEI CTNAG 4 cut(s) 290, 566, 597, 721
BstENI CCTNNNNNAGG 1 cut(s) 403
BstKTI GATC 4 cut(s) 154, 214, 231, 398
BstMBI GATC 4 cut(s) 151, 211, 228, 395
BstMWI GCNNNNNNNGC 3 cut(s) 86, 125, 374
BstSLI GKGCMC 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 98, 359
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 3 cut(s) 151, 211, 395
BstXI CCANNNNNNTGG 1 cut(s) 745
BstYI RGATCY 3 cut(s) 151, 211, 395
BsuRI GGCC 5 cut(s) 39, 119, 141, 296, 771
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 3 cut(s) 535, 563, 631
Cfr13I GGNCC 2 cut(s) 117, 294
Csp6I GTAC 1 cut(s) 421
CviAII CATG 2 cut(s) 169, 634
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 4 cut(s) 290, 566, 597, 721
DpnI GATC 4 cut(s) 153, 213, 230, 397
DpnII GATC 4 cut(s) 151, 211, 228, 395
DraIII CACNNNGTG 1 cut(s) 569
EaeI YGGCCR 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 720
Eco130I CCWWGG 2 cut(s) 40, 52
Eco24I GRGCYC 1 cut(s) 722
Eco32I GATATC 1 cut(s) 193
Eco53kI GAGCTC 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 720
EcoNI CCTNNNNNAGG 1 cut(s) 403
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 2 cut(s) 40, 52
EcoT38I GRGCYC 1 cut(s) 722
ErhI CCWWGG 2 cut(s) 40, 52
FaeI CATG 2 cut(s) 172, 637
FaqI GGGAC 2 cut(s) 400, 437
FatI CATG 2 cut(s) 168, 633
Fnu4HI GCNGC 2 cut(s) 87, 348
FriOI GRGCYC 1 cut(s) 722
Fsp4HI GCNGC 2 cut(s) 87, 348
FspBI CTAG 1 cut(s) 405
GluI GCNGC 2 cut(s) 87, 348
HaeIII GGCC 5 cut(s) 39, 119, 141, 296, 771
Hin1II CATG 2 cut(s) 172, 637
HinfI GANTC 2 cut(s) 202, 785
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 2 cut(s) 433, 651
Hpy188I TCNGA 6 cut(s) 110, 211, 233, 395, 600, 756
Hpy188III TCNNGA 4 cut(s) 196, 215, 358, 789
Hpy8I GTNNAC 2 cut(s) 433, 651
HpyAV CCTTC 2 cut(s) 315, 367
HpyCH4V TGCA 7 cut(s) 32, 86, 248, 368, 543, 651, 686
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 125, 374
HpyF3I CTNAG 4 cut(s) 290, 566, 597, 721
Hsp92II CATG 2 cut(s) 172, 637
Kzo9I GATC 4 cut(s) 151, 211, 228, 395
LpnPI CCDG 5 cut(s) 117, 155, 343, 431, 637
Lsp1109I GCAGC 2 cut(s) 98, 359
LweI GCATC 1 cut(s) 73
MaeI CTAG 1 cut(s) 405
MalI GATC 4 cut(s) 153, 213, 230, 397
MboI GATC 4 cut(s) 151, 211, 228, 395
MboII GAAGA 2 cut(s) 523, 545
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 3 cut(s) 151, 211, 395
MhlI GDGCHC 3 cut(s) 101, 653, 722
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 4 cut(s) 33, 388, 536, 708
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 755
MnlI CCTC 9 cut(s) 249, 333, 409, 465, 497, 565, 598, 606, 673
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
MseI TTAA 3 cut(s) 21, 173, 225
Msp20I TGGCCA 1 cut(s) 141
MspCI CTTAAG 1 cut(s) 224
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 621
MwoI GCNNNNNNNGC 3 cut(s) 86, 125, 374
NdeII GATC 4 cut(s) 151, 211, 228, 395
NlaIII CATG 2 cut(s) 172, 637
NlaIV GGNNCC 2 cut(s) 153, 397
PctI GAATGC 1 cut(s) 621
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 2 cut(s) 88, 349
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 722
PspN4I GGNNCC 2 cut(s) 153, 397
PspPI GGNCC 2 cut(s) 117, 294
PsuI RGATCY 3 cut(s) 151, 211, 395
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SacI GAGCTC 1 cut(s) 722
SaqAI TTAA 3 cut(s) 21, 173, 225
SatI GCNGC 2 cut(s) 87, 348
Sau3AI GATC 4 cut(s) 151, 211, 228, 395
Sau96I GGNCC 2 cut(s) 117, 294
SchI GAGTC 1 cut(s) 196
SduI GDGCHC 3 cut(s) 101, 653, 722
SetI ASST 6 cut(s) 82, 260, 307, 668, 722, 727
SfaNI GCATC 1 cut(s) 73
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 33, 388, 536, 708
SspMI CTAG 1 cut(s) 405
SstI GAGCTC 1 cut(s) 722
StyI CCWWGG 2 cut(s) 40, 52
TaqI TCGA 1 cut(s) 197
TasI AATT 4 cut(s) 33, 388, 536, 708
Tru1I TTAA 3 cut(s) 21, 173, 225
Tru9I TTAA 3 cut(s) 21, 173, 225
TscAI CASTG 3 cut(s) 535, 570, 631
TseI GCWGC 2 cut(s) 86, 347
TspDTI ATGAA 2 cut(s) 94, 386
TspRI CASTG 3 cut(s) 535, 570, 631
Van91I CCANNNNNTGG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 224
VneI GTGCAC 1 cut(s) 649
XagI CCTNNNNNAGG 1 cut(s) 403
XapI RAATTY 2 cut(s) 388, 536
XcmI CCANNNNNNNNNTGG 1 cut(s) 631
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.