RLG00000032957

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000200
Physical Location & Seq
Forward (+)
21369937 .. 21370479
543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032957

Sequence Viewer

Length: 543 bp
ATGCAAGCATCAAGTGCAAACTCGGATTGTAGAAGAGTTTCATCAGCATGGTGTCCAATTGTGAACATGAGGAATATATTGGCGCAGCCCTCTACAGAAAACTTGATGGGCAATCTTTTAGGGTTCTTTGTAGCAAAATCAACAGGAGCTGAAAGTGATGATGATCTTCAACGCCTGGTTGCTAAAATGAGGAAGCGGTTTGAGGAGTTTGAGGAAAACTATGATACTAATGATGTTAGCATGGATGATATATGTGAGCTCCTAACAGAGTTAGTGAAGTTGATGCATAAAGGTGATATAGAGTGCTATTACCCCACTAGTTGGTGCAGGTTTCCTTTCTATGAAGCCAATTTTGGATGGGGAAAGCCACTGATGAGCATTCCTGCTACTGAAGAACTCAAGAATTTGATTACATTGATGGATACGAGTGATGGAGATGGCATAGAAGTGCGCTTGATTTTGAAAGAAGAAGACGTGTCCATATTTGAAAACAATGAGGAGCTGCTAGCATATGCTTCTTTAAATCCCTCTGTCATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

181

Amino Acids

20.41

Weight (kDa)

4.38

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 168 3.9e-22 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 318
AccB7I CCANNNNNTGG 1 cut(s) 321
AciI CCGC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 3 cut(s) 170, 463, 488
AhlI ACTAGT 1 cut(s) 317
AjiI CACGTC 1 cut(s) 475
AjnI CCWGG 1 cut(s) 174
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 3 cut(s) 149, 259, 502
AluI AGCT 3 cut(s) 149, 259, 502
Alw21I GWGCWC 1 cut(s) 261
AlwNI CAGNNNCTG 1 cut(s) 149
ApeKI GCWGC 2 cut(s) 85, 502
ApoI RAATTY 1 cut(s) 403
Asp700I GAANNNNTTC 1 cut(s) 37
AspLEI GCGC 2 cut(s) 85, 453
AsuHPI GGTGA 1 cut(s) 305
AsuNHI GCTAGC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 477
Bbv12I GWGCWC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 97, 489
BccI CCATC 5 cut(s) 100, 351, 412, 425, 431
BciT130I CCWGG 1 cut(s) 176
BciVI GTATCC 1 cut(s) 415
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 2 cut(s) 318, 506
BfmI CTRYAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 318
BfuI GTATCC 1 cut(s) 415
BisI GCNGC 2 cut(s) 86, 503
BlsI GCNGC 2 cut(s) 87, 504
Bme1390I CCNGG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 475
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 17, 273
BmtI GCTAGC 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 250, 362
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 321
BseRI GAGGAG 2 cut(s) 218, 512
BseXI GCAGC 2 cut(s) 97, 489
BsgI GTGCAG 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 321
BsmI GAATGC 1 cut(s) 378
Bsp1286I GDGCHC 1 cut(s) 261
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 509
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 28
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 2 cut(s) 6, 507
BstF5I GGATG 2 cut(s) 250, 362
BstHHI GCGC 2 cut(s) 85, 453
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 97, 489
BstV2I GAAGAC 1 cut(s) 477
BsuI GTATCC 1 cut(s) 415
BtrI CACGTC 1 cut(s) 475
BtsCI GGATG 2 cut(s) 250, 362
BtsIMutI CAGTG 1 cut(s) 368
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 2 cut(s) 6, 507
CaiI CAGNNNCTG 1 cut(s) 149
CfoI GCGC 2 cut(s) 85, 453
CviAII CATG 3 cut(s) 48, 67, 241
CviJI RGCY 6 cut(s) 88, 149, 259, 347, 367, 502
CviKI_1 RGCY 6 cut(s) 88, 149, 259, 347, 367, 502
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 411
EcoICRI GAGCTC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 261
FaeI CATG 3 cut(s) 51, 70, 244
FatI CATG 3 cut(s) 47, 66, 240
FauNDI CATATG 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 86, 503
FokI GGATG 2 cut(s) 257, 369
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 86, 503
FspBI CTAG 2 cut(s) 318, 506
GlaI GCGC 2 cut(s) 84, 452
GluI GCNGC 2 cut(s) 86, 503
HhaI GCGC 2 cut(s) 85, 453
Hin1II CATG 3 cut(s) 51, 70, 244
Hin6I GCGC 2 cut(s) 83, 451
HinP1I GCGC 2 cut(s) 83, 451
HphI GGTGA 1 cut(s) 305
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 400
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 4 cut(s) 4, 17, 286, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 3 cut(s) 51, 70, 244
HspAI GCGC 2 cut(s) 83, 451
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 3 cut(s) 146, 264, 499
LpnPI CCDG 5 cut(s) 129, 161, 188, 313, 396
Lsp1109I GCAGC 2 cut(s) 97, 489
LweI GCATC 2 cut(s) 17, 273
MaeI CTAG 2 cut(s) 318, 506
MaeII ACGT 1 cut(s) 474
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 5 cut(s) 45, 158, 404, 479, 482
MfeI CAATTG 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 261
MluCI AATT 3 cut(s) 57, 349, 403
MnlI CCTC 7 cut(s) 63, 100, 183, 196, 205, 490, 538
Mph1103I ATGCAT 1 cut(s) 288
MroXI GAANNNNTTC 1 cut(s) 37
MseI TTAA 1 cut(s) 521
MslI CAYNNNNRTG 3 cut(s) 46, 291, 446
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 378
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 511
NdeII GATC 1 cut(s) 163
NheI GCTAGC 1 cut(s) 505
NlaIII CATG 3 cut(s) 51, 70, 244
NsiI ATGCAT 1 cut(s) 288
PctI GAATGC 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 37
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 2 cut(s) 87, 504
Psp124BI GAGCTC 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PstNI CAGNNNCTG 1 cut(s) 149
RseI CAYNNNNRTG 3 cut(s) 46, 291, 446
SacI GAGCTC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 521
SatI GCNGC 2 cut(s) 86, 503
Sau3AI GATC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 261
SetI ASST 6 cut(s) 151, 261, 295, 332, 477, 504
SfaNI GCATC 2 cut(s) 17, 273
SfcI CTRYAG 1 cut(s) 93
SmiMI CAYNNNNRTG 3 cut(s) 46, 291, 446
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 3 cut(s) 57, 349, 403
SsiI CCGC 1 cut(s) 196
SspMI CTAG 2 cut(s) 318, 506
SstI GAGCTC 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 174
TaiI ACGT 1 cut(s) 477
TasI AATT 3 cut(s) 57, 349, 403
Tru1I TTAA 1 cut(s) 521
Tru9I TTAA 1 cut(s) 521
TscAI CASTG 1 cut(s) 375
TseI GCWGC 2 cut(s) 85, 502
TspDTI ATGAA 2 cut(s) 30, 357
TspRI CASTG 1 cut(s) 375
Van91I CCANNNNNTGG 1 cut(s) 321
XapI RAATTY 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 37
XspI CTAG 2 cut(s) 318, 506
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.