Rroxscaffold_1G00052750

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000200
Physical Location & Seq
Reverse (-)
73502667 .. 73504031
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052750.1

Sequence Viewer

Length: 1365 bp
ATGGAGTGTCTTCGTTATGAGAACTCAGTGTGGAGCAAGATGGGTTCAGAGATCAAGGTCGAAGTCATTCACAAAGAAACAATCATTCCATCCTCTCCAACTCCTCCCCACCTTGAAAGTTTGAGCCTCTCTGTTTTTGATCAGCTTCAACCTGAATTTTATGTCCCACTTCTTCTCTTCTATCCCAACAGTGGCAATGAGATCAATATTGATCACCATTCTTTGGCTGCTGAAAGATCCAGCCTTCTAAAAACATCGTTGTCTAAAACCCTTACTCACTTCTACCCGTTTGCAGGAAAATTTGAATATAATGTTTCGATAAGTTGCAATGATCATGGGGCAGCATTTCTTGAAGCCCAAGTGAACTGTCCCATATCCAAAGTTCTGGAAAAACCTGATCACGAGGTTTTAAAACAACTGCTTCCAGCTGATATAGCATCCACACAGGAAGTCGCAGGCCACCTTCTACTAGTCCAGGTCAACTTCTTCGAATGTGGTGGGATGGCAATAGGAGTCAACATCTCACATAAGGTCGGTGATGCTTTTACATTCAGCAAATTCATTAATAGCTGGGCTGCAGTTTCCTTTGGCTCCAGTGCTAGTGATCATATAGTGGTTCCAGCTGTAGAATTTGGTGTTGTGGCTTCTCTCTGTCCACCGCTAGATTTCTTCAACTCGCGACAACCTATTGTTGAATTTGCTAAAGAAAAATCGGTCACAGAAAGATTTGTGTTTGAAGCCTCGAAGATTGATGCTCTTAAGTCTAAAGCTGCTAGCTCCACTGTGCCAAATCCTACGCGTGTTGAAGTTGTATCTGCACTCATTTGGAAATGTGCCACGGAAGCGTCAAGATCAAACTTGGGTTCTGTGAGGCCATCTGTGTGGTGTCAAGTGGTGAACATGCGGAAAAGATCAGGGCAGCGCTTGACAGAGAACTCACTGGGGAATTTTGTTTGGTACTTTGCATCAATGACAATGGAAAGTGAAGTAGATCTCCAAAGCTTGGTTGCTAAATTCAGGAAAGGCATTGAGGAATTTAAAGAAAAATATCCTAATGGAGTTAGTCCGCAGGACGTATGTCAAACCATACAGGAATCTGGGAACCTCATGATAAAGGATGGTATAGACAATTATAGTTGCAGCAGCTGGTGCAGATTTCCCTTCTATGAAGCCAATTTTGGATGGGGTAAGCCATCATGGGTGAGTATCCGTACTATGGCAGCAAAGAACACAATTCAATTGACAGATACGAGAGATGGAAAGGGTATAGAAGCGTCCTTGGCTTTGAAAGAAGAAGATATGGCTATAATTGGTAGTAATGAGGAGCTGCTTGCATATGCATCTCTAAATCCAGCTGCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

454

Amino Acids

50.22

Weight (kDa)

5.58

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 19 - 443 9.5e-91 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 223, 1003
AccII CGCG 2 cut(s) 679, 799
AciI CCGC 3 cut(s) 659, 904, 1067
AclWI GGATC 1 cut(s) 231
AcsI RAATTY 8 cut(s) 155, 299, 557, 629, 695, 946, 1013, 1034
AfaI GTAC 2 cut(s) 959, 1213
AfeI AGCGCT 1 cut(s) 923
AfiI CCNNNNNNNGG 5 cut(s) 191, 223, 293, 1003, 1216
AflII CTTAAG 1 cut(s) 758
AflIII ACRYGT 1 cut(s) 797
AhlI ACTAGT 1 cut(s) 469
AjnI CCWGG 1 cut(s) 474
AjuI GAANNNNNNNTTGG 2 cut(s) 1161, 1193
AlwI GGATC 1 cut(s) 231
AlwNI CAGNNNCTG 1 cut(s) 1146
Aor51HI AGCGCT 1 cut(s) 923
AoxI GGCC 2 cut(s) 457, 872
ApoI RAATTY 8 cut(s) 155, 299, 557, 629, 695, 946, 1013, 1034
AseI ATTAAT 1 cut(s) 564
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 924
AsuHPI GGTGA 4 cut(s) 206, 548, 907, 1213
AsuII TTCGAA 1 cut(s) 489
AsuNHI GCTAGC 1 cut(s) 773
BauI CACGAG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 2
BccI CCATC 8 cut(s) 34, 97, 496, 883, 1112, 1176, 1201, 1250
BciT130I CCWGG 1 cut(s) 476
BciVI GTATCC 1 cut(s) 1217
BclI TGATCA 5 cut(s) 139, 211, 331, 397, 604
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 4 cut(s) 470, 600, 662, 774
BfmI CTRYAG 2 cut(s) 576, 624
BfoI RGCGCY 1 cut(s) 925
BfrI CTTAAG 1 cut(s) 758
BfuI GTATCC 1 cut(s) 1217
BglII AGATCT 1 cut(s) 991
Bme1390I CCNGG 1 cut(s) 476
BmiI GGNNCC 3 cut(s) 592, 618, 1103
BmrFI CCNGG 1 cut(s) 476
BmrI ACTGGG 1 cut(s) 950
BmsI GCATC 5 cut(s) 446, 529, 742, 974, 1349
BmtI GCTAGC 1 cut(s) 777
BmuI ACTGGG 1 cut(s) 950
BoxI GACNNNNGTC 1 cut(s) 1077
BpiI GAAGAC 1 cut(s) 2
BpmI CTGGAG 1 cut(s) 577
Bpu14I TTCGAA 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 837, 1278
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 223, 293, 1003, 1216
Bse1I ACTGG 2 cut(s) 594, 945
Bse3DI GCAATG 2 cut(s) 202, 334
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 2 cut(s) 837, 1278
BseGI GGATG 5 cut(s) 89, 437, 507, 1123, 1187
BseLI CCNNNNNNNGG 5 cut(s) 191, 223, 293, 1003, 1216
BseMI GCAATG 2 cut(s) 202, 334
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 2 cut(s) 594, 945
BseRI GAGGAG 2 cut(s) 93, 1337
BseYI CCCAGC 1 cut(s) 570
BsgI GTGCAG 2 cut(s) 801, 1171
Bsh1236I CGCG 2 cut(s) 679, 799
BshFI GGCC 2 cut(s) 459, 874
BslFI GGGAC 2 cut(s) 149, 354
BslI CCNNNNNNNGG 5 cut(s) 191, 223, 293, 1003, 1216
BsmFI GGGAC 2 cut(s) 149, 354
BsnI GGCC 2 cut(s) 459, 874
Bsp119I TTCGAA 1 cut(s) 489
Bsp68I TCGCGA 1 cut(s) 679
BspACI CCGC 3 cut(s) 659, 904, 1067
BspANI GGCC 2 cut(s) 459, 874
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 2 cut(s) 679, 799
BspHI TCATGA 1 cut(s) 1107
BspLI GGNNCC 3 cut(s) 592, 618, 1103
BspMAI CTGCAG 1 cut(s) 580
BspOI GCTAGC 1 cut(s) 777
BspPI GGATC 1 cut(s) 231
BspT104I TTCGAA 1 cut(s) 489
BspTI CTTAAG 1 cut(s) 758
BsrDI GCAATG 2 cut(s) 202, 334
BsrI ACTGG 2 cut(s) 594, 945
BssECI CCNNGG 2 cut(s) 837, 1278
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 1278
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 3 cut(s) 191, 368, 784
Bst6I CTCTTC 1 cut(s) 182
BstAFI CTTAAG 1 cut(s) 758
BstAPI GCANNNNNTGC 1 cut(s) 1149
BstBI TTCGAA 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 457, 775, 1332
BstDEI CTNAG 1 cut(s) 25
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 5 cut(s) 89, 437, 507, 1123, 1187
BstFNI CGCG 2 cut(s) 679, 799
BstH2I RGCGCY 1 cut(s) 925
BstHHI GCGC 1 cut(s) 924
BstMWI GCNNNNNNNGC 4 cut(s) 434, 842, 1149, 1280
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 904
BstPAI GACNNNNGTC 1 cut(s) 1077
BstSCI CCNGG 1 cut(s) 474
BstSFI CTRYAG 2 cut(s) 576, 624
BstUI CGCG 2 cut(s) 679, 799
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 2 cut(s) 236, 991
BstXI CCANNNNNNTGG 2 cut(s) 385, 882
BstYI RGATCY 2 cut(s) 236, 991
BsuI GTATCC 1 cut(s) 1217
BsuRI GGCC 2 cut(s) 459, 874
BtgI CCRYGG 1 cut(s) 837
BtsCI GGATG 5 cut(s) 89, 437, 507, 1123, 1187
BtsIMutI CAGTG 5 cut(s) 33, 196, 601, 780, 938
BtuMI TCGCGA 1 cut(s) 679
Cac8I GCNNGC 3 cut(s) 457, 775, 1332
CaiI CAGNNNCTG 1 cut(s) 1146
CciI TCATGA 1 cut(s) 1107
CfoI GCGC 1 cut(s) 924
CseI GACGC 2 cut(s) 834, 1263
Csp6I GTAC 2 cut(s) 958, 1212
CviAII CATG 4 cut(s) 335, 901, 1108, 1197
CviQI GTAC 2 cut(s) 958, 1212
DdeI CTNAG 1 cut(s) 25
DraI TTTAAA 2 cut(s) 411, 1039
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 1278
Eco47III AGCGCT 1 cut(s) 923
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 1278
EcoT22I ATGCAT 1 cut(s) 1342
ErhI CCWWGG 1 cut(s) 1278
FaeI CATG 4 cut(s) 338, 904, 1111, 1200
FaqI GGGAC 2 cut(s) 149, 354
FatI CATG 4 cut(s) 334, 900, 1107, 1196
FauNDI CATATG 1 cut(s) 1336
FbaI TGATCA 5 cut(s) 139, 211, 331, 397, 604
FokI GGATG 5 cut(s) 76, 424, 514, 1130, 1194
FspBI CTAG 4 cut(s) 470, 600, 662, 774
GlaI GCGC 1 cut(s) 923
GsaI CCCAGC 1 cut(s) 574
GsuI CTGGAG 1 cut(s) 577
HaeII RGCGCY 1 cut(s) 925
HaeIII GGCC 2 cut(s) 459, 874
HgaI GACGC 2 cut(s) 834, 1263
HhaI GCGC 1 cut(s) 924
Hin1II CATG 4 cut(s) 338, 904, 1111, 1200
Hin6I GCGC 1 cut(s) 922
HinP1I GCGC 1 cut(s) 922
HincII GTYRAC 2 cut(s) 481, 517
HindII GTYRAC 2 cut(s) 481, 517
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 2 cut(s) 513, 1094
HphI GGTGA 4 cut(s) 206, 548, 907, 1213
Hpy166II GTNNAC 5 cut(s) 364, 481, 517, 656, 898
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 7 cut(s) 350, 386, 401, 678, 849, 1018, 1108
Hpy8I GTNNAC 5 cut(s) 364, 481, 517, 656, 898
HpyAV CCTTC 3 cut(s) 254, 473, 1171
HpyCH4III ACNGT 3 cut(s) 191, 368, 784
HpyCH4IV ACGT 1 cut(s) 1074
HpyCH4V TGCA 9 cut(s) 293, 327, 578, 818, 965, 1140, 1152, 1334, 1340
HpyF10VI GCNNNNNNNGC 4 cut(s) 434, 842, 1149, 1280
HpyF3I CTNAG 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 1074
Hsp92II CATG 4 cut(s) 338, 904, 1111, 1200
HspAI GCGC 1 cut(s) 922
Ksp22I TGATCA 5 cut(s) 139, 211, 331, 397, 604
LmnI GCTCC 4 cut(s) 33, 596, 782, 1324
LweI GCATC 5 cut(s) 446, 529, 742, 974, 1349
MaeI CTAG 4 cut(s) 470, 600, 662, 774
MaeII ACGT 1 cut(s) 1074
MaeIII GTNAC 1 cut(s) 715
MboII GAAGA 7 cut(s) 164, 169, 478, 661, 757, 1304, 1307
MfeI CAATTG 1 cut(s) 1238
MflI RGATCY 2 cut(s) 236, 991
MluI ACGCGT 1 cut(s) 797
MlyI GAGTC 1 cut(s) 522
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 9 cut(s) 103, 114, 137, 397, 751, 864, 1024, 1115, 1315
Mph1103I ATGCAT 1 cut(s) 1342
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 4 cut(s) 410, 564, 759, 1038
MslI CAYNNNNRTG 1 cut(s) 880
MspA1I CMGCKG 4 cut(s) 428, 623, 1146, 1355
MspCI CTTAAG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 476
MunI CAATTG 1 cut(s) 1238
MvaI CCWGG 1 cut(s) 476
MvnI CGCG 2 cut(s) 679, 799
MwoI GCNNNNNNNGC 4 cut(s) 434, 842, 1149, 1280
NdeI CATATG 1 cut(s) 1336
NheI GCTAGC 1 cut(s) 773
NlaIII CATG 4 cut(s) 338, 904, 1111, 1200
NlaIV GGNNCC 3 cut(s) 592, 618, 1103
NmuCI GTSAC 1 cut(s) 715
NruI TCGCGA 1 cut(s) 679
NsiI ATGCAT 1 cut(s) 1342
NspI RCATGY 1 cut(s) 904
NspV TTCGAA 1 cut(s) 489
PagI TCATGA 1 cut(s) 1107
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 1094
PflMI CCANNNNNTGG 2 cut(s) 223, 1003
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PshAI GACNNNNGTC 1 cut(s) 1077
PshBI ATTAAT 1 cut(s) 564
Psp6I CCWGG 1 cut(s) 474
PspFI CCCAGC 1 cut(s) 570
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 3 cut(s) 592, 618, 1103
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 1146
PsuI RGATCY 2 cut(s) 236, 991
PvuII CAGCTG 4 cut(s) 428, 623, 1146, 1355
RruI TCGCGA 1 cut(s) 679
RsaI GTAC 2 cut(s) 959, 1213
RsaNI GTAC 2 cut(s) 958, 1212
RseI CAYNNNNRTG 1 cut(s) 880
SaqAI TTAA 4 cut(s) 410, 564, 759, 1038
SchI GAGTC 1 cut(s) 522
ScrFI CCNGG 1 cut(s) 476
SfaNI GCATC 5 cut(s) 446, 529, 742, 974, 1349
SfcI CTRYAG 2 cut(s) 576, 624
SfuI TTCGAA 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 880
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
SpeI ACTAGT 1 cut(s) 469
SsiI CCGC 3 cut(s) 659, 904, 1067
SspI AATATT 1 cut(s) 208
SspMI CTAG 4 cut(s) 470, 600, 662, 774
StyD4I CCNGG 1 cut(s) 474
StyI CCWWGG 1 cut(s) 1278
TaaI ACNGT 3 cut(s) 191, 368, 784
TaiI ACGT 1 cut(s) 1077
TaqI TCGA 4 cut(s) 60, 317, 489, 743
TaqII GACCGA 1 cut(s) 703
TfiI GAWTC 1 cut(s) 1094
Tru1I TTAA 4 cut(s) 410, 564, 759, 1038
Tru9I TTAA 4 cut(s) 410, 564, 759, 1038
TscAI CASTG 5 cut(s) 33, 196, 601, 787, 945
TseFI GTSAC 1 cut(s) 715
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 550, 1182
TspGWI ACGGA 2 cut(s) 854, 1199
TspRI CASTG 5 cut(s) 33, 196, 601, 787, 945
Van91I CCANNNNNTGG 2 cut(s) 223, 1003
Vha464I CTTAAG 1 cut(s) 758
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 8 cut(s) 155, 299, 557, 629, 695, 946, 1013, 1034
XceI RCATGY 1 cut(s) 904
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 4 cut(s) 470, 600, 662, 774
Zsp2I ATGCAT 1 cut(s) 1342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.