RLG00000008060

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
25019941 .. 25020714
774 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008060

Sequence Viewer

Length: 774 bp
ATGAGCGTTGGCACTAATGTAGTGGCTTTTCCAACTATAGAATTTGGTGTTGCAGCATCTGTTTACCCACCACAAGATTTATTCATCAAGTCATTGCAAACTTCGGGGGAATATGTTTATGGAGATTTTGTGAAAAGGAGATTTGTTTTTTATGCCTCAAATATTCTACGTCTCAAGTCAAAAGCCGCCAGTGCCATCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTCAGCGCTTATTTGGAAATGTGCAATGGATGCATCAAGATCAAACTTGGGTGTTACAATGCCAGCCATGCTATTTCTAGCAGCAAATATGCGGAAAGTATTGGGGCATCCCACTTTAATGGGAAATCTTTTAGGATATGTCTCTGCAGCAAAGGCACAAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATATTACGGGAAGGCATTGAGAAATTTAAAGTGAAATATGGTAATGGAGTTAGTGGAGATGATATCTACCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATATAGATAACTATACTTGTACCAGTTGGTGCAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCATGGGTCACTATTCCAGGTGTCCCAATCAAGAATCTAATTGTATTGATTGATACAAAAGATGGTGAAGGCATAGAAGCATTCTTGAGTTTAAAAGAAGATGACATGGCTGTAATTGAAACCAATAAGGAGTTCCTTGCGTTTGCATCTCTCAATCCTATAGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

258

Amino Acids

28.33

Weight (kDa)

5.97

Isoelectric Point (pI)

35.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 32 - 246 1.4e-33 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 552
AciI CCGC 2 cut(s) 186, 319
AcsI RAATTY 2 cut(s) 41, 443
AfaI GTAC 1 cut(s) 550
AfeI AGCGCT 1 cut(s) 234
AgsI TTSAA 4 cut(s) 221, 407, 499, 722
AjnI CCWGG 1 cut(s) 619
AjuI GAANNNNNNNTTGG 4 cut(s) 570, 602, 719, 751
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Alw26I GTCTC 2 cut(s) 176, 373
AlwNI CAGNNNCTG 1 cut(s) 59
Aor51HI AGCGCT 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 53, 308, 374
ApoI RAATTY 2 cut(s) 41, 443
AspLEI GCGC 1 cut(s) 235
AsuHPI GGTGA 1 cut(s) 680
BauI CACGAG 1 cut(s) 213
BbvI GCAGC 3 cut(s) 65, 320, 386
BccI CCATC 4 cut(s) 203, 585, 610, 659
BciT130I CCWGG 1 cut(s) 621
BcoDI GTCTC 2 cut(s) 176, 373
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 3 cut(s) 36, 372, 762
BfoI RGCGCY 1 cut(s) 236
BfuAI ACCTGC 1 cut(s) 552
BisI GCNGC 4 cut(s) 54, 186, 309, 375
BlsI GCNGC 4 cut(s) 55, 187, 310, 376
Bme1390I CCNGG 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 621
BmsI GCATC 6 cut(s) 65, 247, 269, 343, 385, 758
BpuEI CTTGAG 2 cut(s) 158, 709
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bse1I ACTGG 2 cut(s) 189, 552
Bse3DI GCAATG 2 cut(s) 92, 258
BseBI CCWGG 1 cut(s) 621
BseGI GGATG 3 cut(s) 262, 334, 596
BseMI GCAATG 2 cut(s) 92, 258
BseNI ACTGG 2 cut(s) 189, 552
BseXI GCAGC 3 cut(s) 65, 320, 386
BsgI GTGCAG 1 cut(s) 580
BslFI GGGAC 1 cut(s) 611
BsmAI GTCTC 2 cut(s) 176, 373
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 1 cut(s) 683
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 2 cut(s) 186, 319
BspMAI CTGCAG 1 cut(s) 376
BspMI ACCTGC 1 cut(s) 552
BsrDI GCAATG 2 cut(s) 92, 258
BsrI ACTGG 2 cut(s) 189, 552
BssMI GATC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 621
Bst6I CTCTTC 1 cut(s) 408
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 291
BstF5I GGATG 3 cut(s) 262, 334, 596
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 2 cut(s) 176, 373
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 5 cut(s) 191, 257, 295, 380, 567
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 619
BstSFI CTRYAG 3 cut(s) 36, 372, 762
BstV1I GCAGC 3 cut(s) 65, 320, 386
BstXI CCANNNNNNTGG 1 cut(s) 346
BtsCI GGATG 3 cut(s) 262, 334, 596
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 291
CaiI CAGNNNCTG 1 cut(s) 59
CfoI GCGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 549
CviAII CATG 4 cut(s) 295, 506, 606, 709
CviJI RGCY 8 cut(s) 26, 185, 293, 411, 570, 581, 601, 713
CviKI_1 RGCY 8 cut(s) 26, 185, 293, 411, 570, 581, 601, 713
CviQI GTAC 1 cut(s) 549
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
DraI TTTAAA 2 cut(s) 448, 696
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco32I GATATC 1 cut(s) 484
Eco47III AGCGCT 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 619
EcoRV GATATC 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 4 cut(s) 298, 509, 609, 712
FaqI GGGAC 1 cut(s) 611
FatI CATG 4 cut(s) 294, 505, 605, 708
Fnu4HI GCNGC 4 cut(s) 54, 186, 309, 375
FokI GGATG 3 cut(s) 269, 321, 603
Fsp4HI GCNGC 4 cut(s) 54, 186, 309, 375
FspBI CTAG 1 cut(s) 305
GlaI GCGC 1 cut(s) 234
GluI GCNGC 4 cut(s) 54, 186, 309, 375
HaeII RGCGCY 1 cut(s) 236
HhaI GCGC 1 cut(s) 235
Hin1II CATG 4 cut(s) 298, 509, 609, 712
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 1 cut(s) 637
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 264, 634, 688
Hpy8I GTNNAC 1 cut(s) 64
HpyAV CCTTC 2 cut(s) 425, 665
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 8 cut(s) 53, 97, 251, 260, 374, 398, 561, 749
HpyF10VI GCNNNNNNNGC 5 cut(s) 191, 257, 295, 380, 567
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 4 cut(s) 298, 509, 609, 712
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 202, 303, 547, 565, 606, 633
Lsp1109I GCAGC 3 cut(s) 65, 320, 386
LweI GCATC 6 cut(s) 65, 247, 269, 343, 385, 758
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 280, 610
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 3 cut(s) 395, 521, 713
MluCI AATT 5 cut(s) 41, 443, 583, 642, 717
MmeI TCCRAC 2 cut(s) 56, 233
MnlI CCTC 1 cut(s) 166
Mph1103I ATGCAT 1 cut(s) 262
MseI TTAA 4 cut(s) 344, 447, 515, 695
MslI CAYNNNNRTG 1 cut(s) 344
MspR9I CCNGG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 5 cut(s) 191, 257, 295, 380, 567
NdeII GATC 1 cut(s) 266
NlaIII CATG 4 cut(s) 298, 509, 609, 712
NmuCI GTSAC 1 cut(s) 610
NsiI ATGCAT 1 cut(s) 262
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 1 cut(s) 637
PkrI GCNGC 4 cut(s) 55, 187, 310, 376
Psp6I CCWGG 1 cut(s) 619
PspGI CCWGG 1 cut(s) 619
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 59
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 4 cut(s) 344, 447, 515, 695
SatI GCNGC 4 cut(s) 54, 186, 309, 375
Sau3AI GATC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 621
SetI ASST 4 cut(s) 172, 413, 566, 625
SfaNI GCATC 6 cut(s) 65, 247, 269, 343, 385, 758
SfcI CTRYAG 3 cut(s) 36, 372, 762
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 173, 688
SmoI CTYRAG 2 cut(s) 173, 688
Sse9I AATT 5 cut(s) 41, 443, 583, 642, 717
SsiI CCGC 2 cut(s) 186, 319
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 619
TaiI ACGT 1 cut(s) 172
TasI AATT 5 cut(s) 41, 443, 583, 642, 717
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 637
Tru1I TTAA 4 cut(s) 344, 447, 515, 695
Tru9I TTAA 4 cut(s) 344, 447, 515, 695
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 53, 308, 374
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 73, 522, 591
TspRI CASTG 1 cut(s) 196
XapI RAATTY 2 cut(s) 41, 443
XspI CTAG 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.