pycom05g19930

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000200
Physical Location & Seq
Reverse (-)
22884822 .. 22886177
1356 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19930.1

Sequence Viewer

Length: 1356 bp
ATGGCCACAGAAATCAAGGTAGAAATTATTGAGAGGCAAACAATTAAACCATCCACCTCAACTCCTCATCACTTGAGAAGTTATAAGCTCTCTTTTCTCGATCAGATGGCTTTCGTAATTTACACCCCACTCCTTCTCTTCTATCCCATTACCAGTACTACTAGTAACGTTAGTACTCGCCACCATGCTATGAGCATAGATGAAAGATGCCAGCATCTAATAGAATCATTAGCTAAAACTCTCACGCACTTCTACCCTTTAGCAGGAAGGATTGTGAAAGGTAATTCCATAGTCGAGTGCAACGATGATGGAGCTGCATTTATAAAAGCACGAATCAGCTGTTGCTTGTCGGATATTTTGGAAAACCCAGATGGCCAGATATTGAAACGATTCCTTCCAATTGAAATTGAATCCAAAGAAGCGGGCACAGGCTGGTTGCTGCTTGTACAAGTTAACTTGTTTGAGTGTGGTGGAATGGCAATTGGGTTGAGCATTTCACATAGGATTGCTGATGCATCAACACTATGCACATTCATCAACTGTTGGGCCACAATAGCACTTGGGTCAAGTGACAGTGATCAGGTACTAAACCTTCCAGAATTTGGTGCTGCATCTGTTTTTAAACCAATAGAATTTTCTAGCTCATCTCAGCCACCAGCAAGGGAAGTCATCAAAGAAAAATGCATAATACAGAGGTATGTTTTTGATGCCTCAAAGATTTCCACTCTCCAATCTGAAGTAGCCAGTTCATTTGTGGCCAAACCTACACGAGTCGAAGCGGTTTCAGCACTCATTTGGAAGTGTGCAACCGAAGCATCGAGATCAAACTTGAGGAAGCAAGGGCCTTCATTTTTCCGTCAAGATGTGAACTTGCGCAAAAGGGTTGTGCCTCCCTTGCCAGAAAACTTGGCTGGGAATGTTGTGGGTTCCTTTACGTCAAAGGCTGATGAAGAGAGTAGTGTGATAAATCTAAAAGACTTGGTTGCTAAATTGAGGGAAGGCATTGAAGGACTGAAAGAAAAATATGCTGCAAAACTTGTCTTTGATTCTGATGAGGCATGGCAAGAAATCAAAGATGAGCAGAATAAGCCGAAAACTCATGACAACATGGAGATTTATAGCTGCACAAGTTGGTGTAGGTTTCCTTTCTACGAAGCCGATTTCGGATGGGGAAGACCATCATGGGCGAGCGTAGCTAGTATTGCAATTAAGAACATAATTGTTTTGATGGACAAAAGAGATTGCAGCGGAATTGAAGCATGGGTGACGATGAGTGAAGAAAGCAAGGCCTTATTTGAAAGCAAAGTGGAACTGCTTGGATATGCTTCCGTAAATCCAAGTGTGATTGACACCTAG

Protein Analysis

452

Amino Acids

50.13

Weight (kDa)

5.87

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 438 7.7e-87 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 84, 323
Acc16I TGCGCA 1 cut(s) 875
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 3 cut(s) 422, 779, 1248
AclI AACGTT 1 cut(s) 168
AcoI YGGCCR 3 cut(s) 3, 373, 756
AcsI RAATTY 2 cut(s) 599, 632
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 4 cut(s) 157, 175, 447, 585
AfiI CCNNNNNNNGG 2 cut(s) 263, 602
AgsI TTSAA 6 cut(s) 385, 404, 410, 1007, 1256, 1298
AhlI ACTAGT 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 619, 651
AluBI AGCT 7 cut(s) 88, 233, 314, 339, 642, 1122, 1196
AluI AGCT 7 cut(s) 88, 233, 314, 339, 642, 1122, 1196
AoxI GGCC 6 cut(s) 3, 373, 546, 756, 842, 1287
ApeKI GCWGC 6 cut(s) 314, 439, 608, 1028, 1122, 1245
ApoI RAATTY 2 cut(s) 599, 632
Asp700I GAANNNNTTC 1 cut(s) 389
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 2 cut(s) 546, 842
AsuHPI GGTGA 1 cut(s) 1276
BaeGI GKGCMC 1 cut(s) 428
BalI TGGCCA 3 cut(s) 5, 375, 758
BarI GAAGNNNNNNTAC 2 cut(s) 576, 608
BauI CACGAG 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 1180
BbvI GCAGC 6 cut(s) 301, 426, 595, 1015, 1109, 1257
BccI CCATC 7 cut(s) 58, 100, 302, 365, 1161, 1186, 1222
BclI TGATCA 1 cut(s) 577
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 4 cut(s) 162, 639, 1197, 1354
BisI GCNGC 6 cut(s) 315, 440, 609, 1029, 1123, 1246
BlsI GCNGC 6 cut(s) 316, 441, 610, 1030, 1124, 1247
BmcAI AGTACT 2 cut(s) 157, 175
BmgT120I GGNCC 2 cut(s) 546, 842
BmiI GGNNCC 1 cut(s) 928
BmsI GCATC 7 cut(s) 197, 223, 502, 524, 620, 697, 824
BpiI GAAGAC 1 cut(s) 1180
BpuEI CTTGAG 2 cut(s) 94, 850
BsaXI ACNNNNNCTCC 2 cut(s) 46, 76
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 602
Bse1I ACTGG 2 cut(s) 153, 744
BseGI GGATG 2 cut(s) 50, 1172
BseLI CCNNNNNNNGG 2 cut(s) 263, 602
BseMII CTCAG 1 cut(s) 662
BseNI ACTGG 2 cut(s) 153, 744
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 6 cut(s) 301, 426, 595, 1015, 1109, 1257
BseYI CCCAGC 1 cut(s) 911
BsgI GTGCAG 1 cut(s) 1108
BshFI GGCC 6 cut(s) 5, 375, 548, 758, 844, 1289
BslI CCNNNNNNNGG 2 cut(s) 263, 602
BsnI GGCC 6 cut(s) 5, 375, 548, 758, 844, 1289
Bsp1286I GDGCHC 1 cut(s) 428
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 3 cut(s) 100, 577, 821
BspACI CCGC 3 cut(s) 422, 779, 1248
BspANI GGCC 6 cut(s) 5, 375, 548, 758, 844, 1289
BspCNI CTCAG 1 cut(s) 661
BspHI TCATGA 1 cut(s) 1099
BspLI GGNNCC 1 cut(s) 928
BsrGI TGTACA 1 cut(s) 445
BsrI ACTGG 2 cut(s) 153, 744
BssMI GATC 3 cut(s) 100, 577, 821
BssSI CACGAG 1 cut(s) 768
Bst2BI CACGAG 1 cut(s) 768
Bst4CI ACNGT 2 cut(s) 542, 575
Bst6I CTCTTC 2 cut(s) 143, 945
BstAUI TGTACA 1 cut(s) 445
BstC8I GCNNGC 3 cut(s) 212, 424, 1189
BstDEI CTNAG 1 cut(s) 648
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 50, 1172
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 3 cut(s) 103, 580, 824
BstMBI GATC 3 cut(s) 100, 577, 821
BstMWI GCNNNNNNNGC 7 cut(s) 554, 785, 812, 895, 1087, 1193, 1202
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 6 cut(s) 301, 426, 595, 1015, 1109, 1257
BstV2I GAAGAC 1 cut(s) 1180
BsuRI GGCC 6 cut(s) 5, 375, 548, 758, 844, 1289
BtsCI GGATG 2 cut(s) 50, 1172
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 3 cut(s) 212, 424, 1189
CciI TCATGA 1 cut(s) 1099
CfoI GCGC 1 cut(s) 876
Cfr13I GGNCC 2 cut(s) 546, 842
Csp6I GTAC 4 cut(s) 156, 174, 446, 584
CviAII CATG 6 cut(s) 185, 1059, 1100, 1108, 1182, 1260
CviQI GTAC 4 cut(s) 156, 174, 446, 584
DdeI CTNAG 1 cut(s) 648
DpnI GATC 3 cut(s) 102, 579, 823
DpnII GATC 3 cut(s) 100, 577, 821
DraI TTTAAA 1 cut(s) 622
EaeI YGGCCR 3 cut(s) 3, 373, 756
Eam1104I CTCTTC 2 cut(s) 143, 945
EarI CTCTTC 2 cut(s) 143, 945
Eco147I AGGCCT 1 cut(s) 1289
Eco57I CTGAAG 1 cut(s) 756
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 842
EcoT22I ATGCAT 2 cut(s) 517, 686
FaeI CATG 6 cut(s) 188, 1062, 1103, 1111, 1185, 1263
FatI CATG 6 cut(s) 184, 1058, 1099, 1107, 1181, 1259
FauI CCCGC 1 cut(s) 415
FbaI TGATCA 1 cut(s) 577
Fnu4HI GCNGC 6 cut(s) 315, 440, 609, 1029, 1123, 1246
FokI GGATG 2 cut(s) 37, 1179
Fsp4HI GCNGC 6 cut(s) 315, 440, 609, 1029, 1123, 1246
FspBI CTAG 4 cut(s) 162, 639, 1197, 1354
FspI TGCGCA 1 cut(s) 875
GlaI GCGC 1 cut(s) 875
GluI GCNGC 6 cut(s) 315, 440, 609, 1029, 1123, 1246
GsaI CCCAGC 1 cut(s) 915
HaeIII GGCC 6 cut(s) 5, 375, 548, 758, 844, 1289
HhaI GCGC 1 cut(s) 876
Hin1II CATG 6 cut(s) 188, 1062, 1103, 1111, 1185, 1263
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 6 cut(s) 224, 333, 390, 410, 771, 1046
HpaI GTTAAC 1 cut(s) 454
HphI GGTGA 1 cut(s) 1276
Hpy166II GTNNAC 2 cut(s) 454, 868
Hpy188I TCNGA 5 cut(s) 105, 352, 736, 1051, 1166
Hpy188III TCNNGA 5 cut(s) 98, 596, 819, 860, 1100
Hpy8I GTNNAC 2 cut(s) 454, 868
HpyAV CCTTC 7 cut(s) 143, 261, 404, 602, 855, 992, 1001
HpyCH4III ACNGT 2 cut(s) 542, 575
HpyCH4IV ACGT 2 cut(s) 168, 935
HpyF10VI GCNNNNNNNGC 7 cut(s) 554, 785, 812, 895, 1087, 1193, 1202
HpyF3I CTNAG 1 cut(s) 648
HpySE526I ACGT 2 cut(s) 168, 935
Hsp92II CATG 6 cut(s) 188, 1062, 1103, 1111, 1185, 1263
HspAI GCGC 1 cut(s) 874
Ksp22I TGATCA 1 cut(s) 577
KspAI GTTAAC 1 cut(s) 454
Kzo9I GATC 3 cut(s) 100, 577, 821
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 6 cut(s) 301, 426, 595, 1015, 1109, 1257
LweI GCATC 7 cut(s) 197, 223, 502, 524, 620, 697, 824
MaeI CTAG 4 cut(s) 162, 639, 1197, 1354
MaeII ACGT 2 cut(s) 168, 935
MaeIII GTNAC 3 cut(s) 164, 569, 1264
MalI GATC 3 cut(s) 102, 579, 823
MboI GATC 3 cut(s) 100, 577, 821
MboII GAAGA 4 cut(s) 130, 962, 1185, 1289
MfeI CAATTG 2 cut(s) 399, 480
MhlI GDGCHC 1 cut(s) 428
MlsI TGGCCA 3 cut(s) 5, 375, 758
MluNI TGGCCA 3 cut(s) 5, 375, 758
MlyI GAGTC 1 cut(s) 780
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 9 cut(s) 27, 67, 75, 687, 721, 825, 900, 987, 1048
Mox20I TGGCCA 3 cut(s) 5, 375, 758
Mph1103I ATGCAT 2 cut(s) 517, 686
MroXI GAANNNNTTC 1 cut(s) 389
MscI TGGCCA 3 cut(s) 5, 375, 758
MseI TTAA 4 cut(s) 45, 453, 621, 1209
Msp20I TGGCCA 3 cut(s) 5, 375, 758
MspA1I CMGCKG 2 cut(s) 339, 1248
MunI CAATTG 2 cut(s) 399, 480
MwoI GCNNNNNNNGC 7 cut(s) 554, 785, 812, 895, 1087, 1193, 1202
NdeII GATC 3 cut(s) 100, 577, 821
NlaIII CATG 6 cut(s) 188, 1062, 1103, 1111, 1185, 1263
NlaIV GGNNCC 1 cut(s) 928
NmuCI GTSAC 2 cut(s) 569, 1264
NsbI TGCGCA 1 cut(s) 875
NsiI ATGCAT 2 cut(s) 517, 686
PagI TCATGA 1 cut(s) 1099
PceI AGGCCT 1 cut(s) 1289
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 389
PfeI GAWTC 5 cut(s) 224, 333, 390, 410, 1046
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 6 cut(s) 316, 441, 610, 1030, 1124, 1247
PleI GAGTC 1 cut(s) 779
PpsI GAGTC 1 cut(s) 779
PsiI TTATAA 2 cut(s) 84, 323
Psp1406I AACGTT 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 911
PspN4I GGNNCC 1 cut(s) 928
PspPI GGNCC 2 cut(s) 546, 842
PvuII CAGCTG 1 cut(s) 339
RsaI GTAC 4 cut(s) 157, 175, 447, 585
RsaNI GTAC 4 cut(s) 156, 174, 446, 584
SaqAI TTAA 4 cut(s) 45, 453, 621, 1209
SatI GCNGC 6 cut(s) 315, 440, 609, 1029, 1123, 1246
Sau3AI GATC 3 cut(s) 100, 577, 821
Sau96I GGNCC 2 cut(s) 546, 842
ScaI AGTACT 2 cut(s) 157, 175
SchI GAGTC 1 cut(s) 780
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 7 cut(s) 197, 223, 502, 524, 620, 697, 824
SmlI CTYRAG 2 cut(s) 73, 829
SmoI CTYRAG 2 cut(s) 73, 829
SpeI ACTAGT 1 cut(s) 161
SseBI AGGCCT 1 cut(s) 1289
SsiI CCGC 3 cut(s) 422, 779, 1248
SspMI CTAG 4 cut(s) 162, 639, 1197, 1354
StuI AGGCCT 1 cut(s) 1289
TaaI ACNGT 2 cut(s) 542, 575
TaiI ACGT 2 cut(s) 171, 938
TaqI TCGA 4 cut(s) 99, 294, 774, 818
TatI WGTACW 3 cut(s) 155, 173, 445
TfiI GAWTC 5 cut(s) 224, 333, 390, 410, 1046
Tru1I TTAA 4 cut(s) 45, 453, 621, 1209
Tru9I TTAA 4 cut(s) 45, 453, 621, 1209
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 2 cut(s) 569, 1264
TseI GCWGC 6 cut(s) 314, 439, 608, 1028, 1122, 1245
Tsp45I GTSAC 2 cut(s) 569, 1264
TspDTI ATGAA 5 cut(s) 216, 523, 738, 837, 963
TspGWI ACGGA 2 cut(s) 845, 1318
TspRI CASTG 1 cut(s) 580
Van91I CCANNNNNTGG 1 cut(s) 602
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 2 cut(s) 599, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 751
XmnI GAANNNNTTC 1 cut(s) 389
XspI CTAG 4 cut(s) 162, 639, 1197, 1354
ZrmI AGTACT 2 cut(s) 157, 175
Zsp2I ATGCAT 2 cut(s) 517, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.