RLG00000008681

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000200
Physical Location & Seq
Forward (+)
34868445 .. 34869773
1329 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008681

Sequence Viewer

Length: 1329 bp
ATGGTGATCGAAGTAATCAGCAAGGAAACAGTTACACCATCATCTTCTTCTCTTCACCACCTTAGAACTTCCAACCTCTCTGTTTTTGATCATCTTGTACCAGACTTGTATGTCCCCATACTTTTCTTCTATCCCAACAATAGTATTACTGATCATAAGATCAATATAGTTGATCATCACCACTCTATGATTACCAAAAGATCTAAGCTTCTGAAAACTTCATTATCTAAAACCCTCAGCCACTTCTATCCCTTTGCAGGAAGAATATTTACTGACAACAACATTCTTTCAATCTGTTGCAATGACAATGGGGCTGCATTTATTGAAACTCGTGTCAATTGTCCCATATCAAAGGTTATGGAAAAGCACAATTTTGGGATACTAAGTCAATTACTTCCCAATGACCTACAATCAACATTTGAAAGCACAGGCTATCTCCTATTAGTCCAAGCCAACTTCTTTGAATGTGGCGGACTTGCAATTGGGATTACCATTTCACACAAGATCGCGGACGGGTTTACACTCGGAACATTCATCCGTAGCTGGGCAGCAATGTGCCTTGGCTTTAATGTAGTGGCTCTTCCAGCTACAGAATTTGGTGTTCCAGCATCTTTTTACCCACAACAAGATTTATTCATCAACTCATTTTCAACTTCCAGGGAACATGTTAATAGTGAAGCTGGCGTCAATAAGAGATTTGTGTTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACTAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAGCACTTCTTTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGAGTTTTACAAGGCCAGCTATGCTGTTTCTAGCAGTAAACATGCGGAAAGTATTGAAGCATCCCACTTTAATGGGAAATCTTGTAGGATGTGTCTTTGCAGCAAAGACACAAGAAGGTGATGCAACTCTTCAAAGCTTAATTGCTATACTTAGGAAAAGCATTGAGGAATTTAAAGTGAACTATGGTGAAGGAGTTAGCAGGGATGCTATTTGCCAACATTTTAAAGAGCATGGAGAATTAATGGATAATAATGAAATAAATAACTATTTATGCACCAGTTGGTGCAAATTTGGCTTTTATGAAGCCAATTTTGGATGGGGAAAGCCATCTTGGGTCACTTTTCCAGGTATGAAAATCAAGAATACAATTGTGTTGATTGATACAAAAGACGGTGAAGGCATGGAAGCGTTCTTGAGTTTAAAAGAAGAGGACATGACTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTCAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

443

Amino Acids

49.25

Weight (kDa)

6.92

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 431 2.7e-82 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccII CGCG 1 cut(s) 509
AciI CCGC 3 cut(s) 471, 509, 874
AcsI RAATTY 3 cut(s) 593, 998, 1118
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 2 cut(s) 99, 723
AfiI CCNNNNNNNGG 2 cut(s) 257, 544
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 9 cut(s) 291, 326, 422, 464, 651, 776, 886, 962, 1277
AhlI ACTAGT 1 cut(s) 743
AjnI CCWGG 2 cut(s) 656, 1174
AjuI GAANNNNNNNTTGG 4 cut(s) 1125, 1144, 1157, 1176
AluBI AGCT 7 cut(s) 208, 543, 587, 680, 848, 966, 1291
AluI AGCT 7 cut(s) 208, 543, 587, 680, 848, 966, 1291
Alw26I GTCTC 1 cut(s) 731
AoxI GGCC 1 cut(s) 842
ApeKI GCWGC 4 cut(s) 314, 548, 929, 1291
ApoI RAATTY 3 cut(s) 593, 998, 1118
AseI ATTAAT 1 cut(s) 1070
AsuHPI GGTGA 6 cut(s) 16, 47, 170, 959, 1028, 1235
BarI GAAGNNNNNNTAC 4 cut(s) 253, 285, 564, 596
BauI CACGAG 2 cut(s) 330, 768
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 301, 560, 941, 1278
BccI CCATC 3 cut(s) 46, 1140, 1165
BciT130I CCWGG 2 cut(s) 658, 1176
BciVI GTATCC 1 cut(s) 372
BclI TGATCA 3 cut(s) 88, 151, 172
BcoDI GTCTC 1 cut(s) 731
BcuI ACTAGT 1 cut(s) 743
BfaI CTAG 2 cut(s) 744, 860
BfmI CTRYAG 1 cut(s) 588
BfuI GTATCC 1 cut(s) 372
BglII AGATCT 1 cut(s) 200
BisI GCNGC 4 cut(s) 315, 549, 930, 1292
BlsI GCNGC 4 cut(s) 316, 550, 931, 1293
Bme1390I CCNGG 2 cut(s) 658, 1176
BmrFI CCNGG 2 cut(s) 658, 1176
BmsI GCATC 6 cut(s) 617, 697, 824, 898, 940, 1024
Bpu10I CCTNAGC 1 cut(s) 236
BpuEI CTTGAG 3 cut(s) 713, 850, 1264
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 2 cut(s) 559, 657
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 544
Bse1I ACTGG 1 cut(s) 1107
Bse3DI GCAATG 3 cut(s) 307, 558, 813
BseBI CCWGG 2 cut(s) 658, 1176
BseDI CCNNGG 2 cut(s) 559, 657
BseGI GGATG 5 cut(s) 534, 889, 923, 1039, 1151
BseLI CCNNNNNNNGG 2 cut(s) 257, 544
BseMI GCAATG 3 cut(s) 307, 558, 813
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 1107
BseXI GCAGC 4 cut(s) 301, 560, 941, 1278
BseYI CCCAGC 1 cut(s) 543
Bsh1236I CGCG 1 cut(s) 509
BshFI GGCC 1 cut(s) 844
BslFI GGGAC 2 cut(s) 98, 327
BslI CCNNNNNNNGG 2 cut(s) 257, 544
BsmAI GTCTC 1 cut(s) 731
BsmBI CGTCTC 1 cut(s) 731
BsmFI GGGAC 2 cut(s) 98, 327
BsnI GGCC 1 cut(s) 844
Bsp143I GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
BspACI CCGC 3 cut(s) 471, 509, 874
BspANI GGCC 1 cut(s) 844
BspCNI CTCAG 1 cut(s) 249
BspFNI CGCG 1 cut(s) 509
BspQI GCTCTTC 1 cut(s) 585
BsrDI GCAATG 3 cut(s) 307, 558, 813
BsrI ACTGG 1 cut(s) 1107
BssECI CCNNGG 2 cut(s) 559, 657
BssMI GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
BssNI GRCGYC 1 cut(s) 684
BssSI CACGAG 2 cut(s) 330, 768
BssT1I CCWWGG 1 cut(s) 559
Bst2BI CACGAG 2 cut(s) 330, 768
Bst2UI CCWGG 2 cut(s) 658, 1176
Bst4CI ACNGT 5 cut(s) 31, 754, 1223, 1270, 1321
Bst6I CTCTTC 4 cut(s) 57, 585, 963, 1251
BstACI GRCGYC 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 682, 846, 1296
BstDEI CTNAG 5 cut(s) 62, 204, 236, 383, 980
BstF5I GGATG 5 cut(s) 534, 889, 923, 1039, 1151
BstFNI CGCG 1 cut(s) 509
BstKTI GATC 8 cut(s) 9, 91, 154, 162, 175, 203, 507, 824
BstMAI GTCTC 1 cut(s) 731
BstMBI GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
BstMWI GCNNNNNNNGC 5 cut(s) 584, 746, 812, 850, 1122
BstNI CCWGG 2 cut(s) 658, 1176
BstNSI RCATGY 2 cut(s) 668, 874
BstSCI CCNGG 2 cut(s) 656, 1174
BstSFI CTRYAG 1 cut(s) 588
BstUI CGCG 1 cut(s) 509
BstV1I GCAGC 4 cut(s) 301, 560, 941, 1278
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 901
BstYI RGATCY 1 cut(s) 200
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 844
BtsCI GGATG 5 cut(s) 534, 889, 923, 1039, 1151
BtsIMutI CAGTG 1 cut(s) 1317
Cac8I GCNNGC 3 cut(s) 682, 846, 1296
CseI GACGC 1 cut(s) 673
Csp6I GTAC 2 cut(s) 98, 722
CviAII CATG 5 cut(s) 665, 871, 1061, 1231, 1264
CviQI GTAC 2 cut(s) 98, 722
DdeI CTNAG 5 cut(s) 62, 204, 236, 383, 980
DpnI GATC 8 cut(s) 8, 90, 153, 161, 174, 202, 506, 823
DpnII GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
DraI TTTAAA 3 cut(s) 1003, 1054, 1251
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eam1104I CTCTTC 4 cut(s) 57, 585, 963, 1251
EarI CTCTTC 4 cut(s) 57, 585, 963, 1251
EciI GGCGGA 1 cut(s) 486
Eco130I CCWWGG 1 cut(s) 559
EcoRII CCWGG 2 cut(s) 656, 1174
EcoT14I CCWWGG 1 cut(s) 559
ErhI CCWWGG 1 cut(s) 559
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 5 cut(s) 668, 874, 1064, 1234, 1267
FaqI GGGAC 2 cut(s) 98, 327
FatI CATG 5 cut(s) 664, 870, 1060, 1230, 1263
FauNDI CATATG 1 cut(s) 1300
FbaI TGATCA 3 cut(s) 88, 151, 172
Fnu4HI GCNGC 4 cut(s) 315, 549, 930, 1292
FokI GGATG 5 cut(s) 521, 876, 930, 1046, 1158
Fsp4HI GCNGC 4 cut(s) 315, 549, 930, 1292
FspBI CTAG 2 cut(s) 744, 860
GluI GCNGC 4 cut(s) 315, 549, 930, 1292
GsaI CCCAGC 1 cut(s) 547
HaeIII GGCC 1 cut(s) 844
HgaI GACGC 1 cut(s) 673
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 5 cut(s) 668, 874, 1064, 1234, 1267
HindIII AAGCTT 2 cut(s) 206, 964
HphI GGTGA 6 cut(s) 16, 47, 170, 959, 1028, 1235
Hpy166II GTNNAC 3 cut(s) 519, 868, 1009
Hpy188I TCNGA 2 cut(s) 213, 527
Hpy188III TCNNGA 3 cut(s) 819, 1189, 1243
Hpy8I GTNNAC 3 cut(s) 519, 868, 1009
HpyAV CCTTC 3 cut(s) 938, 1013, 1220
HpyCH4III ACNGT 5 cut(s) 31, 754, 1223, 1270, 1321
HpyCH4IV ACGT 1 cut(s) 724
HpyF10VI GCNNNNNNNGC 5 cut(s) 584, 746, 812, 850, 1122
HpyF3I CTNAG 5 cut(s) 62, 204, 236, 383, 980
HpySE526I ACGT 1 cut(s) 724
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 5 cut(s) 668, 874, 1064, 1234, 1267
Ksp22I TGATCA 3 cut(s) 88, 151, 172
Kzo9I GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 1 cut(s) 1288
Lsp1109I GCAGC 4 cut(s) 301, 560, 941, 1278
LweI GCATC 6 cut(s) 617, 697, 824, 898, 940, 1024
MaeI CTAG 2 cut(s) 744, 860
MaeII ACGT 1 cut(s) 724
MaeIII GTNAC 3 cut(s) 31, 781, 1165
MalI GATC 8 cut(s) 8, 90, 153, 161, 174, 202, 506, 823
MboI GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
MboII GAAGA 8 cut(s) 36, 39, 44, 118, 273, 572, 950, 1268
MfeI CAATTG 3 cut(s) 337, 480, 1197
MflI RGATCY 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 96, 788
MnlI CCTC 5 cut(s) 86, 245, 721, 988, 1252
MseI TTAA 8 cut(s) 567, 669, 899, 968, 1002, 1053, 1070, 1250
MslI CAYNNNNRTG 1 cut(s) 899
MspR9I CCNGG 2 cut(s) 658, 1176
MunI CAATTG 3 cut(s) 337, 480, 1197
MvaI CCWGG 2 cut(s) 658, 1176
MvnI CGCG 1 cut(s) 509
MwoI GCNNNNNNNGC 5 cut(s) 584, 746, 812, 850, 1122
NdeI CATATG 1 cut(s) 1300
NdeII GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
NlaIII CATG 5 cut(s) 668, 874, 1064, 1234, 1267
NmuCI GTSAC 2 cut(s) 781, 1165
NspI RCATGY 2 cut(s) 668, 874
PciI ACATGT 1 cut(s) 664
PciSI GCTCTTC 1 cut(s) 585
PkrI GCNGC 4 cut(s) 316, 550, 931, 1293
PscI ACATGT 1 cut(s) 664
PshBI ATTAAT 1 cut(s) 1070
Psp6I CCWGG 2 cut(s) 656, 1174
PspFI CCCAGC 1 cut(s) 543
PspGI CCWGG 2 cut(s) 656, 1174
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 2 cut(s) 99, 723
RsaNI GTAC 2 cut(s) 98, 722
RseI CAYNNNNRTG 1 cut(s) 899
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 8 cut(s) 567, 669, 899, 968, 1002, 1053, 1070, 1250
SatI GCNGC 4 cut(s) 315, 549, 930, 1292
Sau3AI GATC 8 cut(s) 6, 88, 151, 159, 172, 200, 504, 821
ScrFI CCNGG 2 cut(s) 658, 1176
SfaNI GCATC 6 cut(s) 617, 697, 824, 898, 940, 1024
SfcI CTRYAG 1 cut(s) 588
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 3 cut(s) 728, 829, 1243
SmoI CTYRAG 3 cut(s) 728, 829, 1243
SpeI ACTAGT 1 cut(s) 743
SsiI CCGC 3 cut(s) 471, 509, 874
SspI AATATT 2 cut(s) 267, 718
SspMI CTAG 2 cut(s) 744, 860
StyD4I CCNGG 2 cut(s) 656, 1174
StyI CCWWGG 1 cut(s) 559
TaaI ACNGT 5 cut(s) 31, 754, 1223, 1270, 1321
TaiI ACGT 1 cut(s) 727
TaqI TCGA 1 cut(s) 9
Tru1I TTAA 8 cut(s) 567, 669, 899, 968, 1002, 1053, 1070, 1250
Tru9I TTAA 8 cut(s) 567, 669, 899, 968, 1002, 1053, 1070, 1250
TscAI CASTG 1 cut(s) 1324
TseFI GTSAC 2 cut(s) 781, 1165
TseI GCWGC 4 cut(s) 314, 548, 929, 1291
Tsp45I GTSAC 2 cut(s) 781, 1165
TspDTI ATGAA 6 cut(s) 210, 523, 625, 1098, 1146, 1196
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 1 cut(s) 1324
VspI ATTAAT 1 cut(s) 1070
XapI RAATTY 3 cut(s) 593, 998, 1118
XceI RCATGY 2 cut(s) 668, 874
XspI CTAG 2 cut(s) 744, 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.