Rorug04G0171400

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
30175990 .. 30185916
9927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0171400.1

Sequence Viewer

Length: 864 bp
ATGGCTGCTGCGATGAAGATTGTGTTCGGACTCCTTACGTTTGTCACTGTTGGAATGATTATAGGTGCTTTGTTCCAGTTGGCATTTATACGAAGATTGGAAGAGTCGTATGGATCTGAGTTTCCAGCTTCAAGGAGACTGGGCAGAAGTCTAAATGATGGCTATCTTAAATTCCCCAGAGGTGTTCCTCATTGGACCAATGACAAAGAAGCAGAAATTTTACGCCTTGGATATGTCAAACCAGAAGTGATAAGCTGGTTACCTCGAATAATTGTGCTTCATAACTTCTTGAGCGTGGAGGAATGCGACTATCTTAGAGCTATTGCCTCTCCTCGCCTTGAAGTATCCACTGTAGTGGACATCAAAACAGGAAAGGGGATCAAGAGTAAGGTTCGTACCAGCTCTGGTATGTTCTTGAGTCCTCAAGAGAAAAAGTTCCCAATGATACAGGCAATTGAAAAACGTATTTCTGTCTATTCTCAAGTACCAATAGAAAATGGGGAACTGATTCAAGTTTTGAGGTATGAAAAGGACCAGTATTATAAACCTCATCACGACTACTTCTCTGACACTTTTAACTTGAAACGTGGTGGTCAGCGAGTAGCAACAATTCTGATGTATCTGAGTGACAATGTTGAGGGTGGAGAAACTTATTTTCCCATGGCTGGCTCAGGTGAATGTAGCTGTGGTGGAAAAGTTGTCAAGGGTATGTCTGTCAAGCCAACTAAAGGAGATGCTGTACTTTTCTGGAGCATGGGTCTGGATGGCCAATCAGATCCAAATAGCATACATGCAGGGTGCGAGGTGCTAGCTGGGGAAAAGTGGTCAGCCACAAAATGGATGAGGCAAAGAGCTACCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

287

Amino Acids

32.15

Weight (kDa)

9.13

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 169 - 282 2e-10 2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3 PF13640 170 - 282 5.1e-18 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 837
AclWI GGATC 3 cut(s) 121, 386, 770
AcoI YGGCCR 1 cut(s) 766
AcsI RAATTY 2 cut(s) 170, 216
AfaI GTAC 3 cut(s) 397, 486, 741
AfiI CCNNNNNNNGG 3 cut(s) 665, 728, 837
AgsI TTSAA 5 cut(s) 132, 341, 458, 512, 583
AleI CACNNNNGTG 1 cut(s) 353
AluBI AGCT 7 cut(s) 128, 255, 320, 402, 684, 812, 854
AluI AGCT 7 cut(s) 128, 255, 320, 402, 684, 812, 854
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 3 cut(s) 121, 386, 770
AoxI GGCC 1 cut(s) 766
ApeKI GCWGC 2 cut(s) 5, 8
ApoI RAATTY 2 cut(s) 170, 216
Asp700I GAANNNNTTC 2 cut(s) 434, 507
AspS9I GGNCC 2 cut(s) 195, 532
AsuHPI GGTGA 1 cut(s) 686
AsuNHI GCTAGC 1 cut(s) 808
AvaII GGWCC 2 cut(s) 195, 532
BalI TGGCCA 1 cut(s) 768
BccI CCATC 2 cut(s) 152, 758
BciVI GTATCC 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 351
BfuI GTATCC 1 cut(s) 355
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme18I GGWCC 2 cut(s) 195, 532
BmgT120I GGNCC 2 cut(s) 195, 532
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 724
BmtI GCTAGC 1 cut(s) 812
BmuI ACTGGG 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 769
Bpu10I CCTNAGC 1 cut(s) 670
BpuEI CTTGAG 4 cut(s) 310, 408, 436, 465
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 226, 660
BsaXI ACNNNNNCTCC 4 cut(s) 723, 742, 753, 772
Bsc4I CCNNNNNNNGG 3 cut(s) 665, 728, 837
Bse1I ACTGG 3 cut(s) 76, 144, 535
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 226, 660
BseGI GGATG 2 cut(s) 769, 846
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 3 cut(s) 665, 728, 837
BseMII CTCAG 3 cut(s) 108, 614, 684
BseNI ACTGG 3 cut(s) 76, 144, 535
BseRI GAGGAG 1 cut(s) 321
BseYI CCCAGC 1 cut(s) 812
BshFI GGCC 1 cut(s) 768
BslI CCNNNNNNNGG 3 cut(s) 665, 728, 837
BsmAI GTCTC 1 cut(s) 130
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 768
Bsp143I GATC 3 cut(s) 113, 378, 775
Bsp19I CCATGG 1 cut(s) 660
BspANI GGCC 1 cut(s) 768
BspCNI CTCAG 3 cut(s) 109, 615, 683
BspOI GCTAGC 1 cut(s) 812
BspPI GGATC 3 cut(s) 121, 386, 770
BsrI ACTGG 3 cut(s) 76, 144, 535
BssECI CCNNGG 2 cut(s) 226, 660
BssMI GATC 3 cut(s) 113, 378, 775
BssT1I CCWWGG 2 cut(s) 226, 660
Bst4CI ACNGT 2 cut(s) 49, 352
Bst6I CTCTTC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 667, 810
BstDEI CTNAG 4 cut(s) 117, 314, 623, 670
BstDSI CCRYGG 1 cut(s) 660
BstEII GGTNACC 1 cut(s) 258
BstF5I GGATG 2 cut(s) 769, 846
BstKTI GATC 3 cut(s) 116, 381, 778
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 3 cut(s) 113, 378, 775
BstNSI RCATGY 1 cut(s) 794
BstPI GGTNACC 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 351
BstX2I RGATCY 2 cut(s) 113, 775
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 2 cut(s) 113, 775
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 768
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 769, 846
BtsIMutI CAGTG 2 cut(s) 45, 348
Cac8I GCNNGC 2 cut(s) 667, 810
Cfr13I GGNCC 2 cut(s) 195, 532
Csp6I GTAC 3 cut(s) 396, 485, 740
CviAII CATG 3 cut(s) 661, 754, 791
CviQI GTAC 3 cut(s) 396, 485, 740
DdeI CTNAG 4 cut(s) 117, 314, 623, 670
DpnI GATC 3 cut(s) 115, 380, 777
DpnII GATC 3 cut(s) 113, 378, 775
EaeI YGGCCR 1 cut(s) 766
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 2 cut(s) 226, 660
Eco47I GGWCC 2 cut(s) 195, 532
Eco91I GGTNACC 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 226, 660
ErhI CCWWGG 2 cut(s) 226, 660
FaeI CATG 3 cut(s) 664, 757, 794
FatI CATG 3 cut(s) 660, 753, 790
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 2 cut(s) 776, 853
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 1 cut(s) 809
GluI GCNGC 2 cut(s) 6, 9
GsaI CCCAGC 1 cut(s) 816
GsuI CTGGAG 1 cut(s) 769
HaeIII GGCC 1 cut(s) 768
Hin1II CATG 3 cut(s) 664, 757, 794
HinfI GANTC 4 cut(s) 30, 104, 418, 508
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 1 cut(s) 358
Hpy188I TCNGA 6 cut(s) 29, 118, 568, 615, 624, 775
Hpy188III TCNNGA 8 cut(s) 289, 382, 415, 425, 554, 748, 761, 861
Hpy8I GTNNAC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 49, 352
HpyCH4IV ACGT 3 cut(s) 38, 463, 586
HpyCH4V TGCA 1 cut(s) 794
HpyF3I CTNAG 4 cut(s) 117, 314, 623, 670
HpySE526I ACGT 3 cut(s) 38, 463, 586
Hsp92II CATG 3 cut(s) 664, 757, 794
Kzo9I GATC 3 cut(s) 113, 378, 775
LmnI GCTCC 1 cut(s) 750
LweI GCATC 1 cut(s) 724
MaeI CTAG 1 cut(s) 809
MaeII ACGT 3 cut(s) 38, 463, 586
MaeIII GTNAC 3 cut(s) 43, 258, 626
MalI GATC 3 cut(s) 115, 380, 777
MboI GATC 3 cut(s) 113, 378, 775
MboII GAAGA 3 cut(s) 28, 105, 113
MfeI CAATTG 1 cut(s) 453
MflI RGATCY 2 cut(s) 113, 775
MlsI TGGCCA 1 cut(s) 768
MluCI AATT 5 cut(s) 170, 216, 270, 453, 609
MluNI TGGCCA 1 cut(s) 768
MlyI GAGTC 3 cut(s) 24, 113, 427
MmeI TCCRAC 1 cut(s) 31
Mox20I TGGCCA 1 cut(s) 768
MroXI GAANNNNTTC 2 cut(s) 434, 507
MscI TGGCCA 1 cut(s) 768
MseI TTAA 2 cut(s) 168, 576
MslI CAYNNNNRTG 1 cut(s) 353
Msp20I TGGCCA 1 cut(s) 768
MunI CAATTG 1 cut(s) 453
Mva1269I GAATGC 1 cut(s) 308
NcoI CCATGG 1 cut(s) 660
NdeII GATC 3 cut(s) 113, 378, 775
NheI GCTAGC 1 cut(s) 808
NlaIII CATG 3 cut(s) 664, 757, 794
NmuCI GTSAC 2 cut(s) 43, 626
NspI RCATGY 1 cut(s) 794
OliI CACNNNNGTG 1 cut(s) 353
PctI GAATGC 1 cut(s) 308
PdmI GAANNNNTTC 2 cut(s) 434, 507
PfeI GAWTC 1 cut(s) 508
PflMI CCANNNNNTGG 1 cut(s) 837
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 3 cut(s) 24, 112, 426
PpsI GAGTC 3 cut(s) 24, 112, 426
PsiI TTATAA 1 cut(s) 543
PspEI GGTNACC 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 812
PspPI GGNCC 2 cut(s) 195, 532
PsuI RGATCY 2 cut(s) 113, 775
RsaI GTAC 3 cut(s) 397, 486, 741
RsaNI GTAC 3 cut(s) 396, 485, 740
RseI CAYNNNNRTG 1 cut(s) 353
SaqAI TTAA 2 cut(s) 168, 576
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 3 cut(s) 113, 378, 775
Sau96I GGNCC 2 cut(s) 195, 532
SchI GAGTC 3 cut(s) 24, 113, 427
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 351
SinI GGWCC 2 cut(s) 195, 532
SmiMI CAYNNNNRTG 1 cut(s) 353
SmlI CTYRAG 4 cut(s) 289, 415, 423, 480
SmoI CTYRAG 4 cut(s) 289, 415, 423, 480
Sse9I AATT 5 cut(s) 170, 216, 270, 453, 609
SspMI CTAG 1 cut(s) 809
StyI CCWWGG 2 cut(s) 226, 660
TaaI ACNGT 2 cut(s) 49, 352
TaiI ACGT 3 cut(s) 41, 466, 589
TaqI TCGA 1 cut(s) 265
TasI AATT 5 cut(s) 170, 216, 270, 453, 609
TatI WGTACW 1 cut(s) 739
TfiI GAWTC 1 cut(s) 508
Tru1I TTAA 2 cut(s) 168, 576
Tru9I TTAA 2 cut(s) 168, 576
TscAI CASTG 2 cut(s) 52, 355
TseFI GTSAC 2 cut(s) 43, 626
TseI GCWGC 2 cut(s) 5, 8
Tsp45I GTSAC 2 cut(s) 43, 626
TspDTI ATGAA 3 cut(s) 29, 269, 540
TspRI CASTG 2 cut(s) 52, 355
Van91I CCANNNNNTGG 1 cut(s) 837
VpaK11BI GGWCC 2 cut(s) 195, 532
XapI RAATTY 2 cut(s) 170, 216
XceI RCATGY 1 cut(s) 794
XmnI GAANNNNTTC 2 cut(s) 434, 507
XspI CTAG 1 cut(s) 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.