Rw5G017100

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000200
Physical Location & Seq
Forward (+)
21862507 .. 21869532
7026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G017100.1

Sequence Viewer

Length: 1206 bp
ATGGGTTCAGAGGTGAAGGTTGAAGTTGTTCACAAAGAAACAATTAGACCATCATCTCCAACTCCTCACCACCTTCGATTTTTCAGCCTCTCCATTTTTGATCAGCTTTCTCCTGAACTATATTTCCCACTACTTTTAACCAAGCTTCTGAAAAGATCACTATCCGAAACCCTAACTCGCTTCTACCCCTTTGCAGGAAGAATTTTAAATAATGCTTCAGTCTGTTGCAATGACCAAGGAGTTACGTTTCTTGAAGCTCAGGTTACCTGTTCCATATTAAGGGTTTTGGACAAACCTGACCTTGAGTTGCAGAAAAAATTGATTCCTTTAGGAGCTACAAAAGGAGGCACATGCTATGATGTTCTACTAGTCCAGATCAACTTCTATGAACGTGGTGGAATCACAATCGGATTCAATGCTTCGCATAAGATCATTGATGCCCACACACACAGCACATTCATTAATAGTTGGACTGCAATTTCTCTTCGCTTTAGTACCAGTGATAATATTAGAGTAGTGGTTCATCAACAACAATATATTATTGCAGCTTCTCTTTTCCCACCACTGGATTTCTTCAGCTCACCTCCACCTATTGTGGAGTTTGCTATAGAAAAGTGTACAACAAGGAGATTTTTGTTTGAATCCTTGAATATTTCATGTCTTAAGTCTGAAGCTGTCAGTGCTGCAGTGCAAAATCCTTACCCGATTTCATCAGCATGGTGTCCAATTGTGAACATGAGGAGTATATTGGCGCAGCCCTCTACAGAAAACTTGATGGGCAATCTTTTAGGGTTCTTTGTAGCAAAATCAACTGGAGCTGAAAGTGATGATGATCTTCAAGGCCTGGTTGCTAAAATGAGGAAGTGGTTTGAGGAGTTTGAGGAAAACTATGGTACTAATGATGTTAGCATGGATGATATATGTGAGCTCCTAACAGAGTTAGTGAAGTTGATGCATAAAGGTGATATAGATGGTTGGTGCAGGTTTCCTTTCTATGAAGCCAATTTTGGATGGGGAAAGCCACTGATAAGCATTCCTGCTACTGAAGAAGTGAAAGAACTCAAGAATTTGATTACGTTGATGGATACGAGTGATGGAGATGGCATAGAAGTGCGCTTGATTTTGAAAGAAGAAGACGTGGCCATATTTGAAAACAACGAGGAGCTGCTAGCATATGCTTCTTTAAATCCCTCTGTCATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

401

Amino Acids

44.97

Weight (kDa)

5.05

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 164 1.1e-33 Transferase family
Transferase PF02458 234 - 389 1.3e-16 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 972
AcoI YGGCCR 1 cut(s) 1140
AcsI RAATTY 2 cut(s) 201, 1066
AcuI CTGAAG 4 cut(s) 201, 559, 690, 1065
AfaI GTAC 3 cut(s) 496, 619, 895
AfiI CCNNNNNNNGG 3 cut(s) 194, 279, 565
AflII CTTAAG 1 cut(s) 662
AgsI TTSAA 8 cut(s) 23, 254, 415, 641, 649, 839, 1126, 1151
AhlI ACTAGT 1 cut(s) 367
AjiI CACGTC 1 cut(s) 1138
AjnI CCWGG 1 cut(s) 843
AjuI GAANNNNNNNTTGG 2 cut(s) 990, 1022
AloI GAACNNNNNNTCC 2 cut(s) 108, 140
Alw21I GWGCWC 1 cut(s) 930
AoxI GGCC 2 cut(s) 841, 1140
ApeKI GCWGC 4 cut(s) 545, 683, 754, 1165
ApoI RAATTY 2 cut(s) 201, 1066
AseI ATTAAT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 27
AspLEI GCGC 2 cut(s) 754, 1116
AsuHPI GGTGA 4 cut(s) 25, 59, 573, 974
AsuNHI GCTAGC 1 cut(s) 1168
BalI TGGCCA 1 cut(s) 1142
BanII GRGCYC 1 cut(s) 930
BbsI GAAGAC 1 cut(s) 1140
Bbv12I GWGCWC 1 cut(s) 930
BbvI GCAGC 4 cut(s) 557, 670, 766, 1152
BccI CCATC 7 cut(s) 58, 769, 965, 1005, 1075, 1088, 1094
BciT130I CCWGG 1 cut(s) 845
BciVI GTATCC 1 cut(s) 1078
BclI TGATCA 1 cut(s) 100
BcuI ACTAGT 1 cut(s) 367
BfaI CTAG 2 cut(s) 368, 1169
BfmI CTRYAG 3 cut(s) 606, 684, 762
BfrI CTTAAG 1 cut(s) 662
BfuAI ACCTGC 1 cut(s) 972
BfuI GTATCC 1 cut(s) 1078
BisI GCNGC 4 cut(s) 546, 684, 755, 1166
BlsI GCNGC 4 cut(s) 547, 685, 756, 1167
Bme1390I CCNGG 1 cut(s) 845
BmgBI CACGTC 1 cut(s) 1138
BmrFI CCNGG 1 cut(s) 845
BmsI GCATC 2 cut(s) 427, 942
BmtI GCTAGC 1 cut(s) 1172
BpiI GAAGAC 1 cut(s) 1140
BpmI CTGGAG 1 cut(s) 834
Bpu10I CCTNAGC 1 cut(s) 258
BpuEI CTTGAG 2 cut(s) 323, 1046
BsaBI GATNNNNATC 2 cut(s) 160, 831
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 279, 565
Bse1I ACTGG 3 cut(s) 498, 570, 817
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 2 cut(s) 160, 831
BseBI CCWGG 1 cut(s) 845
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 919, 1016
BseJI GATNNNNATC 2 cut(s) 160, 831
BseLI CCNNNNNNNGG 3 cut(s) 194, 279, 565
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 3 cut(s) 498, 570, 817
BseRI GAGGAG 4 cut(s) 54, 754, 887, 1175
BseXI GCAGC 4 cut(s) 557, 670, 766, 1152
BsgI GTGCAG 1 cut(s) 1000
BshFI GGCC 2 cut(s) 843, 1142
BsiHKAI GWGCWC 1 cut(s) 930
BslI CCNNNNNNNGG 3 cut(s) 194, 279, 565
BsmI GAATGC 1 cut(s) 1032
BsnI GGCC 2 cut(s) 843, 1142
Bsp1286I GDGCHC 1 cut(s) 930
Bsp1407I TGTACA 1 cut(s) 617
Bsp143I GATC 5 cut(s) 100, 155, 375, 429, 832
BspANI GGCC 2 cut(s) 843, 1142
BspCNI CTCAG 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 688
BspMI ACCTGC 1 cut(s) 972
BspOI GCTAGC 1 cut(s) 1172
BspTI CTTAAG 1 cut(s) 662
BsrDI GCAATG 1 cut(s) 235
BsrGI TGTACA 1 cut(s) 617
BsrI ACTGG 3 cut(s) 498, 570, 817
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 5 cut(s) 100, 155, 375, 429, 832
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 845
Bst6I CTCTTC 1 cut(s) 489
BstAFI CTTAAG 1 cut(s) 662
BstAUI TGTACA 1 cut(s) 617
BstC8I GCNNGC 1 cut(s) 1170
BstDEI CTNAG 1 cut(s) 258
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 2 cut(s) 919, 1016
BstHHI GCGC 2 cut(s) 754, 1116
BstKTI GATC 5 cut(s) 103, 158, 378, 432, 835
BstMBI GATC 5 cut(s) 100, 155, 375, 429, 832
BstMWI GCNNNNNNNGC 1 cut(s) 680
BstNI CCWGG 1 cut(s) 845
BstNSI RCATGY 1 cut(s) 354
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 843
BstSFI CTRYAG 3 cut(s) 606, 684, 762
BstV1I GCAGC 4 cut(s) 557, 670, 766, 1152
BstV2I GAAGAC 1 cut(s) 1140
BsuI GTATCC 1 cut(s) 1078
BsuRI GGCC 2 cut(s) 843, 1142
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 2 cut(s) 919, 1016
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 5 cut(s) 505, 563, 685, 693, 1022
BveI ACCTGC 1 cut(s) 972
Cac8I GCNNGC 1 cut(s) 1170
CfoI GCGC 2 cut(s) 754, 1116
Csp6I GTAC 3 cut(s) 495, 618, 894
CviAII CATG 5 cut(s) 351, 657, 717, 736, 910
CviQI GTAC 3 cut(s) 495, 618, 894
DdeI CTNAG 1 cut(s) 258
DpnI GATC 5 cut(s) 102, 157, 377, 431, 834
DpnII GATC 5 cut(s) 100, 155, 375, 429, 832
DraI TTTAAA 2 cut(s) 207, 1185
EaeI YGGCCR 1 cut(s) 1140
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
Ecl136II GAGCTC 1 cut(s) 928
Eco130I CCWWGG 1 cut(s) 235
Eco147I AGGCCT 1 cut(s) 843
Eco24I GRGCYC 1 cut(s) 930
Eco53kI GAGCTC 1 cut(s) 928
Eco57I CTGAAG 4 cut(s) 201, 559, 690, 1065
Eco91I GGTNACC 1 cut(s) 262
EcoICRI GAGCTC 1 cut(s) 928
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 843
EcoT14I CCWWGG 1 cut(s) 235
EcoT22I ATGCAT 1 cut(s) 957
EcoT38I GRGCYC 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 5 cut(s) 354, 660, 720, 739, 913
FatI CATG 5 cut(s) 350, 656, 716, 735, 909
FauNDI CATATG 1 cut(s) 1174
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 4 cut(s) 546, 684, 755, 1166
FokI GGATG 2 cut(s) 926, 1023
FriOI GRGCYC 1 cut(s) 930
Fsp4HI GCNGC 4 cut(s) 546, 684, 755, 1166
FspBI CTAG 2 cut(s) 368, 1169
GlaI GCGC 2 cut(s) 753, 1115
GluI GCNGC 4 cut(s) 546, 684, 755, 1166
GsuI CTGGAG 1 cut(s) 834
HaeIII GGCC 2 cut(s) 843, 1142
HhaI GCGC 2 cut(s) 754, 1116
Hin1II CATG 5 cut(s) 354, 660, 720, 739, 913
Hin6I GCGC 2 cut(s) 752, 1114
HinP1I GCGC 2 cut(s) 752, 1114
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 4 cut(s) 322, 399, 411, 641
HphI GGTGA 4 cut(s) 25, 59, 573, 974
Hpy166II GTNNAC 3 cut(s) 31, 618, 733
Hpy188I TCNGA 5 cut(s) 10, 150, 166, 410, 670
Hpy188III TCNNGA 4 cut(s) 113, 251, 373, 1063
Hpy8I GTNNAC 3 cut(s) 31, 618, 733
HpyAV CCTTC 2 cut(s) 10, 83
HpyCH4IV ACGT 4 cut(s) 245, 391, 1076, 1137
HpyCH4V TGCA 9 cut(s) 194, 228, 310, 476, 545, 686, 691, 955, 981
HpyF10VI GCNNNNNNNGC 1 cut(s) 680
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 4 cut(s) 245, 391, 1076, 1137
Hsp92II CATG 5 cut(s) 354, 660, 720, 739, 913
HspAI GCGC 2 cut(s) 752, 1114
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 100, 155, 375, 429, 832
LmnI GCTCC 4 cut(s) 332, 815, 933, 1162
Lsp1109I GCAGC 4 cut(s) 557, 670, 766, 1152
LweI GCATC 2 cut(s) 427, 942
MaeI CTAG 2 cut(s) 368, 1169
MaeII ACGT 4 cut(s) 245, 391, 1076, 1137
MaeIII GTNAC 2 cut(s) 241, 262
MalI GATC 5 cut(s) 102, 157, 377, 431, 834
MboI GATC 5 cut(s) 100, 155, 375, 429, 832
MboII GAAGA 7 cut(s) 210, 476, 565, 827, 1058, 1142, 1145
MfeI CAATTG 1 cut(s) 726
MhlI GDGCHC 1 cut(s) 930
MlsI TGGCCA 1 cut(s) 1142
MluCI AATT 7 cut(s) 42, 201, 317, 477, 726, 1003, 1066
MluNI TGGCCA 1 cut(s) 1142
MmeI TCCRAC 2 cut(s) 83, 449
Mox20I TGGCCA 1 cut(s) 1142
Mph1103I ATGCAT 1 cut(s) 957
MroXI GAANNNNTTC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 1142
MseI TTAA 6 cut(s) 137, 206, 278, 462, 663, 1184
MslI CAYNNNNRTG 3 cut(s) 715, 960, 1109
Msp20I TGGCCA 1 cut(s) 1142
MspCI CTTAAG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 845
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 1032
MvaI CCWGG 1 cut(s) 845
MwoI GCNNNNNNNGC 1 cut(s) 680
NdeI CATATG 1 cut(s) 1174
NdeII GATC 5 cut(s) 100, 155, 375, 429, 832
NheI GCTAGC 1 cut(s) 1168
NlaIII CATG 5 cut(s) 354, 660, 720, 739, 913
NsiI ATGCAT 1 cut(s) 957
NspI RCATGY 1 cut(s) 354
PceI AGGCCT 1 cut(s) 843
PctI GAATGC 1 cut(s) 1032
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 4 cut(s) 322, 399, 411, 641
PkrI GCNGC 4 cut(s) 547, 685, 756, 1167
PshBI ATTAAT 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 930
Psp6I CCWGG 1 cut(s) 843
PspEI GGTNACC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 843
PstI CTGCAG 1 cut(s) 688
RsaI GTAC 3 cut(s) 496, 619, 895
RsaNI GTAC 3 cut(s) 495, 618, 894
RseI CAYNNNNRTG 3 cut(s) 715, 960, 1109
SacI GAGCTC 1 cut(s) 930
SaqAI TTAA 6 cut(s) 137, 206, 278, 462, 663, 1184
SatI GCNGC 4 cut(s) 546, 684, 755, 1166
Sau3AI GATC 5 cut(s) 100, 155, 375, 429, 832
ScrFI CCNGG 1 cut(s) 845
SduI GDGCHC 1 cut(s) 930
SfaNI GCATC 2 cut(s) 427, 942
SfcI CTRYAG 3 cut(s) 606, 684, 762
SmiMI CAYNNNNRTG 3 cut(s) 715, 960, 1109
SmlI CTYRAG 3 cut(s) 302, 662, 1061
SmoI CTYRAG 3 cut(s) 302, 662, 1061
SpeI ACTAGT 1 cut(s) 367
Sse9I AATT 7 cut(s) 42, 201, 317, 477, 726, 1003, 1066
SseBI AGGCCT 1 cut(s) 843
SspI AATATT 2 cut(s) 508, 652
SspMI CTAG 2 cut(s) 368, 1169
SstI GAGCTC 1 cut(s) 930
StuI AGGCCT 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 843
StyI CCWWGG 1 cut(s) 235
TaiI ACGT 4 cut(s) 248, 394, 1079, 1140
TaqI TCGA 1 cut(s) 76
TasI AATT 7 cut(s) 42, 201, 317, 477, 726, 1003, 1066
TatI WGTACW 1 cut(s) 617
TfiI GAWTC 4 cut(s) 322, 399, 411, 641
Tru1I TTAA 6 cut(s) 137, 206, 278, 462, 663, 1184
Tru9I TTAA 6 cut(s) 137, 206, 278, 462, 663, 1184
TscAI CASTG 5 cut(s) 505, 570, 685, 693, 1029
TseI GCWGC 4 cut(s) 545, 683, 754, 1165
TspDTI ATGAA 6 cut(s) 402, 448, 512, 645, 699, 1011
TspRI CASTG 5 cut(s) 505, 570, 685, 693, 1029
Vha464I CTTAAG 1 cut(s) 662
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 2 cut(s) 201, 1066
XceI RCATGY 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 2 cut(s) 368, 1169
Zsp2I ATGCAT 1 cut(s) 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.