pycom05g19990

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000200
Physical Location & Seq
Reverse (-)
22919112 .. 22920422
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19990.1

Sequence Viewer

Length: 1311 bp
ATGAAGATACAAGTCATTTACAAGGACACAATTAAACCATCATTGCCAACTCCTCACCACCTTAGAAATTTAAGCCTTTCTGTTTTCGATCAACTTTTTCCGGATATTTATGTCCCACTACTTCTCTTTTATCCCAACGACAATAATAAGTATTTTGAGGGTAAACATTCTTTGGTTGCCGAGAGATCCAAGCTTCTAAGGAAATCATTATCTGAAGCCCTCACTCGCTTCTATCCATATGCCGGAAATTTCCAGCACAACGCTTCAATTTGTTGCAACGACCATGGAGCCGCCTATGTTGAAGCCCGAGTGAACTGTCCCATGTCGAAGATATTGAACAAGCCCGAACTTGTGATCCTAAAACAATTGCTTCCAACTGTTTTAGACTCCTCACAAGCAGACACAGGCTATCTTCTACTCGTGAAGGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGGTTGGCAGCTCACATAAGGTCGCCGATGCTTATACACTAAGCAAATTCACTAGTTGCTGGGCAGCAATTGCCCGTGGTTCTAATACTACTACCGATCACATAGAGCTTCCTGATAAATTTGGTGTTGCAGATTCTCTTTTCCCACAAGTAGATTTCTTGAATTCGCTTCAACCTGCCCTGAAATTTCCCCAAGAGAAGTGTATAACTAAGAGATTTGTTTTTGATGCATCAAAGATTGCCGCTCTTAAGTCCAAAGCTGGTAGTGCCACCGTGGAAAACGCAACTCGCGTTGAAGTGGTATCAGTGTTGATTTGGAAGTGTGCCATGGAAGCATCGAGATCAAACTTGAGTGTTGTAAGGCCATCCGATTTGTCTCAATTTGTGAACATTCGGAAAATATTGGTGTCGCCTTTGGCAGAAAACTTGTTGGGGAATCTTGTGGGGCTCTGTGTAGCAAAGACCGAAGCAAGTGAAGTAGACGATGTTCAAAGCTTGGTGGCTAAATTCAGGAAAGAGATGGAGGAATTTAAAGTAAGATATGGAAACGGAATTAGCGGGGAGGAAGCGTGTGAGTTCTACAAAGAGTATGGACACCTTATGAAAGGGATGTGGACAACTACCAACTGCAGCAGTTGGTGCAGATTTCCTTTTTATGAAGCTGATTTCGGATGGGGAAAGCCGTTATGGGTGCCTCACATTGGAGGACTGAAGAATCTAATTCTATTGATGGACACAAGAGATGGCGAAGGCATAGAAGCATCCTTGACTCTCAAGAAAGAAGATATGGCTAAATTTGAAAGCAATAAGGAGCTTCTTTCGTATGCATCTGTGAATCCGGCTGTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

437

Amino Acids

48.54

Weight (kDa)

7.91

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 425 6.3e-82 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 1150
AccBSI CCGCTC 1 cut(s) 704
AccI GTMKAC 1 cut(s) 939
AccII CGCG 1 cut(s) 750
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 3 cut(s) 291, 702, 1017
AclWI GGATC 2 cut(s) 180, 349
AcsI RAATTY 9 cut(s) 67, 247, 506, 578, 622, 644, 965, 986, 1253
AcuI CTGAAG 2 cut(s) 234, 1190
AfiI CCNNNNNNNGG 2 cut(s) 242, 1160
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 9 cut(s) 267, 302, 337, 440, 622, 632, 755, 950, 1259
AhlI ACTAGT 1 cut(s) 512
AloI GAACNNNNNNTCC 2 cut(s) 339, 371
AluBI AGCT 7 cut(s) 193, 471, 568, 719, 954, 1121, 1273
AluI AGCT 7 cut(s) 193, 471, 568, 719, 954, 1121, 1273
Alw26I GTCTC 1 cut(s) 840
AlwI GGATC 2 cut(s) 180, 349
Ama87I CYCGRG 1 cut(s) 306
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 2 cut(s) 426, 821
ApeKI GCWGC 3 cut(s) 468, 524, 1089
ApoI RAATTY 9 cut(s) 67, 247, 506, 578, 622, 644, 965, 986, 1253
AsuHPI GGTGA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 306
BanI GGYRCC 1 cut(s) 1150
BanII GRGCYC 1 cut(s) 909
BauI CACGAG 1 cut(s) 419
BbvI GCAGC 3 cut(s) 480, 536, 1101
BccI CCATC 6 cut(s) 46, 832, 973, 1125, 1183, 1196
BceAI ACGGC 1 cut(s) 1126
BcoDI GTCTC 1 cut(s) 840
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 1087
BfrI CTTAAG 1 cut(s) 707
BfuAI ACCTGC 1 cut(s) 643
BisI GCNGC 5 cut(s) 291, 469, 525, 702, 1090
BlsI GCNGC 5 cut(s) 292, 470, 526, 703, 1091
BmeT110I CYCGRG 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 289, 1152
BmsI GCATC 6 cut(s) 478, 676, 698, 803, 1229, 1295
BpuEI CTTGAG 2 cut(s) 829, 1217
BsaJI CCNNGG 4 cut(s) 283, 535, 732, 786
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 1013, 1043
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 1160
Bse3DI GCAATG 1 cut(s) 41
BseAI TCCGGA 1 cut(s) 100
BseDI CCNNGG 4 cut(s) 283, 535, 732, 786
BseGI GGATG 4 cut(s) 824, 1074, 1136, 1220
BseLI CCNNNNNNNGG 2 cut(s) 242, 1160
BseMI GCAATG 1 cut(s) 41
BseRI GAGGAG 2 cut(s) 42, 379
BseXI GCAGC 3 cut(s) 480, 536, 1101
BseYI CCCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 1120
Bsh1236I CGCG 1 cut(s) 750
BshFI GGCC 2 cut(s) 428, 823
BshNI GGYRCC 1 cut(s) 1150
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 3 cut(s) 101, 243, 1298
BslFI GGGAC 2 cut(s) 98, 303
BslI CCNNNNNNNGG 2 cut(s) 242, 1160
BsmAI GTCTC 1 cut(s) 840
BsmFI GGGAC 2 cut(s) 98, 303
BsnI GGCC 2 cut(s) 428, 823
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 909
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 5 cut(s) 88, 185, 354, 556, 800
Bsp19I CCATGG 2 cut(s) 283, 786
BspACI CCGC 3 cut(s) 291, 702, 1017
BspANI GGCC 2 cut(s) 428, 823
BspEI TCCGGA 1 cut(s) 100
BspFNI CGCG 1 cut(s) 750
BspLI GGNNCC 2 cut(s) 289, 1152
BspMAI CTGCAG 1 cut(s) 1091
BspMI ACCTGC 1 cut(s) 643
BspPI GGATC 2 cut(s) 180, 349
BspT107I GGYRCC 1 cut(s) 1150
BspTI CTTAAG 1 cut(s) 707
BsrBI CCGCTC 1 cut(s) 704
BsrDI GCAATG 1 cut(s) 41
BssECI CCNNGG 4 cut(s) 283, 535, 732, 786
BssMI GATC 5 cut(s) 88, 185, 354, 556, 800
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 2 cut(s) 283, 786
Bst2BI CACGAG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 317, 379, 733
BstAFI CTTAAG 1 cut(s) 707
BstAPI GCANNNNNTGC 2 cut(s) 530, 1098
BstDEI CTNAG 4 cut(s) 62, 197, 500, 669
BstDSI CCRYGG 4 cut(s) 283, 535, 732, 786
BstF5I GGATG 4 cut(s) 824, 1074, 1136, 1220
BstFNI CGCG 1 cut(s) 750
BstKTI GATC 5 cut(s) 91, 188, 357, 559, 803
BstMAI GTCTC 1 cut(s) 840
BstMBI GATC 5 cut(s) 88, 185, 354, 556, 800
BstMWI GCNNNNNNNGC 4 cut(s) 530, 725, 791, 1098
BstSFI CTRYAG 1 cut(s) 1087
BstUI CGCG 1 cut(s) 750
BstV1I GCAGC 3 cut(s) 480, 536, 1101
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BsuRI GGCC 2 cut(s) 428, 823
BtgI CCRYGG 4 cut(s) 283, 535, 732, 786
BtsCI GGATG 4 cut(s) 824, 1074, 1136, 1220
BtsIMutI CAGTG 1 cut(s) 771
BveI ACCTGC 1 cut(s) 643
CviAII CATG 3 cut(s) 284, 322, 787
DdeI CTNAG 4 cut(s) 62, 197, 500, 669
DpnI GATC 5 cut(s) 90, 187, 356, 558, 802
DpnII GATC 5 cut(s) 88, 185, 354, 556, 800
DraI TTTAAA 1 cut(s) 991
Eco130I CCWWGG 2 cut(s) 283, 786
Eco24I GRGCYC 1 cut(s) 909
Eco57I CTGAAG 2 cut(s) 234, 1190
Eco88I CYCGRG 1 cut(s) 306
EcoRI GAATTC 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 283, 786
EcoT22I ATGCAT 2 cut(s) 691, 1288
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 2 cut(s) 283, 786
FaeI CATG 3 cut(s) 287, 325, 790
FalI AAGNNNNNCTT 2 cut(s) 416, 448
FaqI GGGAC 2 cut(s) 98, 303
FatI CATG 3 cut(s) 283, 321, 786
FauI CCCGC 1 cut(s) 1010
FauNDI CATATG 1 cut(s) 238
FblI GTMKAC 1 cut(s) 939
Fnu4HI GCNGC 5 cut(s) 291, 469, 525, 702, 1090
FokI GGATG 4 cut(s) 811, 1081, 1143, 1207
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 5 cut(s) 291, 469, 525, 702, 1090
FspBI CTAG 1 cut(s) 513
GluI GCNGC 5 cut(s) 291, 469, 525, 702, 1090
GsaI CCCAGC 1 cut(s) 523
HaeIII GGCC 2 cut(s) 428, 823
HapII CCGG 3 cut(s) 101, 243, 1298
Hin1II CATG 3 cut(s) 287, 325, 790
HindIII AAGCTT 2 cut(s) 191, 952
HinfI GANTC 6 cut(s) 386, 593, 895, 1174, 1228, 1294
HpaII CCGG 3 cut(s) 101, 243, 1298
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 6 cut(s) 164, 313, 449, 847, 940, 1074
Hpy188I TCNGA 4 cut(s) 214, 829, 855, 1130
Hpy188III TCNNGA 7 cut(s) 101, 421, 572, 619, 798, 970, 1234
Hpy8I GTNNAC 6 cut(s) 164, 313, 449, 847, 940, 1074
HpyAV CCTTC 2 cut(s) 418, 1202
HpyCH4III ACNGT 3 cut(s) 317, 379, 733
HpyCH4V TGCA 7 cut(s) 276, 455, 590, 689, 1089, 1101, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 725, 791, 1098
HpyF3I CTNAG 4 cut(s) 62, 197, 500, 669
Hsp92II CATG 3 cut(s) 287, 325, 790
Kpn2I TCCGGA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 88, 185, 354, 556, 800
LmnI GCTCC 2 cut(s) 287, 1270
Lsp1109I GCAGC 3 cut(s) 480, 536, 1101
LweI GCATC 6 cut(s) 478, 676, 698, 803, 1229, 1295
MaeI CTAG 1 cut(s) 513
MalI GATC 5 cut(s) 90, 187, 356, 558, 802
MbiI CCGCTC 1 cut(s) 704
MboI GATC 5 cut(s) 88, 185, 354, 556, 800
MboII GAAGA 5 cut(s) 16, 340, 404, 1183, 1253
MfeI CAATTG 3 cut(s) 365, 456, 528
MflI RGATCY 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 909
MlyI GAGTC 2 cut(s) 380, 1222
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 8 cut(s) 63, 151, 230, 400, 976, 1015, 1157, 1164
Mph1103I ATGCAT 2 cut(s) 691, 1288
MroI TCCGGA 1 cut(s) 100
MseI TTAA 5 cut(s) 33, 71, 708, 990, 1309
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 3 cut(s) 101, 243, 1298
MunI CAATTG 3 cut(s) 365, 456, 528
MvnI CGCG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 530, 725, 791, 1098
NcoI CCATGG 2 cut(s) 283, 786
NdeI CATATG 1 cut(s) 238
NdeII GATC 5 cut(s) 88, 185, 354, 556, 800
NlaIII CATG 3 cut(s) 287, 325, 790
NlaIV GGNNCC 2 cut(s) 289, 1152
NmeAIII GCCGAG 1 cut(s) 205
NsiI ATGCAT 2 cut(s) 691, 1288
PcsI WCGNNNNNNNCGW 1 cut(s) 747
PfeI GAWTC 4 cut(s) 593, 895, 1174, 1294
PkrI GCNGC 5 cut(s) 292, 470, 526, 703, 1091
PleI GAGTC 2 cut(s) 380, 1222
PpsI GAGTC 2 cut(s) 380, 1222
PspFI CCCAGC 1 cut(s) 519
PspN4I GGNNCC 2 cut(s) 289, 1152
PsrI GAACNNNNNNTAC 2 cut(s) 930, 962
PstI CTGCAG 1 cut(s) 1091
PsuI RGATCY 1 cut(s) 185
SaqAI TTAA 5 cut(s) 33, 71, 708, 990, 1309
SatI GCNGC 5 cut(s) 291, 469, 525, 702, 1090
Sau3AI GATC 5 cut(s) 88, 185, 354, 556, 800
SchI GAGTC 2 cut(s) 380, 1222
SduI GDGCHC 1 cut(s) 909
SfaNI GCATC 6 cut(s) 478, 676, 698, 803, 1229, 1295
SfcI CTRYAG 1 cut(s) 1087
SmlI CTYRAG 3 cut(s) 707, 808, 1232
SmoI CTYRAG 3 cut(s) 707, 808, 1232
SpeI ACTAGT 1 cut(s) 512
SsiI CCGC 3 cut(s) 291, 702, 1017
SspI AATATT 1 cut(s) 861
SspMI CTAG 1 cut(s) 513
StyI CCWWGG 2 cut(s) 283, 786
TaaI ACNGT 3 cut(s) 317, 379, 733
TaqI TCGA 3 cut(s) 87, 326, 797
TaqII GACCGA 1 cut(s) 938
TauI GCSGC 2 cut(s) 293, 704
TfiI GAWTC 4 cut(s) 593, 895, 1174, 1294
Tru1I TTAA 5 cut(s) 33, 71, 708, 990, 1309
Tru9I TTAA 5 cut(s) 33, 71, 708, 990, 1309
TscAI CASTG 1 cut(s) 771
TseI GCWGC 3 cut(s) 468, 524, 1089
TspDTI ATGAA 3 cut(s) 17, 1076, 1131
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 1 cut(s) 771
Vha464I CTTAAG 1 cut(s) 707
XapI RAATTY 9 cut(s) 67, 247, 506, 578, 622, 644, 965, 986, 1253
XmiI GTMKAC 1 cut(s) 939
XspI CTAG 1 cut(s) 513
Zsp2I ATGCAT 2 cut(s) 691, 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.