RLG00000008058

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000200
Physical Location & Seq
Forward (+)
25010816 .. 25012492
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008058

Sequence Viewer

Length: 1323 bp
ATGAGGGTTGAAGTGATCGACAATGAAACAATTACACCATCATCTCCTACTCCTCACCACCTTACAACTTTCAACCTTTCTGTTTTTGATCAGTTTTTACCAGACTTGTATGTTCCTCTACTTCTCTTCTATCCCAACAATAGTACTACTAATCACAAGGGCAATACGGTTGATCACCACTACTCATTGATTACTGAAAGATCCAAGCTTCTGAAAACTTCATTATCTGAAGCCCTCAGCCGTTTTTATCCCTTCGCAGGAAGAATATTTAGGCACAACAATATTCTTTCGATCTGTTGCAATGACCATGGTGCTGCATTTATCCAAACCCGTGTCAACTGTCCCATATCAAAGGTTTTGGAGAAGCCCCATGCTGGGATGCTAAATCAATTACTTCCAAATGACATAGAATCAACATTTGAAAGCACGGGCTATCTCCTACTAGTCCAAGCCAACTTCTTCGAATGTGGTGGAATTGCAATTGGGGTTAGCATTTCACATAAGATCGCAGACGGCTTCACACTCGGAACATTTATCCGTAGCTGGGCAGCAATGGGCCTTGGCACTGATGTAGTAGCTCTTCCAACTGCAGAATTTGGTGTTGCAGCATCTGTTTACCTACCACAAGATTTATCCATCAAGTCATTGCAAACTTCTGGGGAATATGTTTATGAAGATTGTGTAAAAAGAAGATTTGTTTTTGATGCCTCAAATATTCTACGTCTCAAGTCTAAAGCCACTAGTGTCATTGTTCCAAATCCAACTCGCGTTGAAGTAGTGTCAGCGCTTATTTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGGGTGTTACAAGGCCAGCAATGTTGTTTCTAGCAGCAAACATGCGGAAAGTATTGGGGCTTCCCACGTTAATGGGAAATCTTTTAGGATATGTCCCAACAAAGACACAAGAAAGTGAGGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAGGCATTGAGAAATTTAAAGTAAATTATGGTAATGGAGTTAGCGGAGATGATATCTGCCAACATTTCAAAAGGCATGAAGATTTAATGCGTAAGAATGATATAAATAACTATACATGTAGCAGTTGGTGCAAGTTTGGCTTCTATGAAGCTAATTTTGGATGGGGAAAGCCATCGTGGGTCACTATGCCAGGTATGCCAGTCAAGAATGTAATTATATTGATTGATGCAAAAGATGGTGAAGGCGTAGAAGCGTTATTGAGTTTTAAAGAAGACGACATGGCTATAATTGAAACCAATAAGGAGCTGCTTGCATATGCATCTTTCAATCCTATGGCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

441

Amino Acids

48.81

Weight (kDa)

6.42

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 1 - 429 2.9e-78 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 768
AciI CCGC 2 cut(s) 871, 1023
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 2 cut(s) 593, 992
AcuI CTGAAG 1 cut(s) 249
AfaI GTAC 1 cut(s) 145
AfeI AGCGCT 1 cut(s) 786
AfiI CCNNNNNNNGG 4 cut(s) 257, 374, 375, 544
AflIII ACRYGT 1 cut(s) 1094
AgsI TTSAA 8 cut(s) 11, 73, 422, 773, 956, 1048, 1271, 1306
AhlI ACTAGT 2 cut(s) 442, 740
AjnI CCWGG 1 cut(s) 1168
AjuI GAANNNNNNNTTGG 2 cut(s) 1119, 1151
AluBI AGCT 6 cut(s) 208, 543, 578, 960, 1130, 1285
AluI AGCT 6 cut(s) 208, 543, 578, 960, 1130, 1285
Alw26I GTCTC 1 cut(s) 728
AlwI GGATC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 611
Aor51HI AGCGCT 1 cut(s) 786
AoxI GGCC 2 cut(s) 556, 839
ApeKI GCWGC 5 cut(s) 314, 548, 605, 860, 1285
ApoI RAATTY 2 cut(s) 593, 992
AspLEI GCGC 1 cut(s) 787
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 3 cut(s) 47, 167, 1229
AsuII TTCGAA 1 cut(s) 462
BarI GAAGNNNNNNTAC 4 cut(s) 564, 596, 870, 902
BbsI GAAGAC 1 cut(s) 1257
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 5 cut(s) 301, 560, 617, 872, 1272
BccI CCATC 5 cut(s) 46, 644, 1134, 1159, 1208
BceAI ACGGC 2 cut(s) 225, 529
BciT130I CCWGG 1 cut(s) 1170
BclI TGATCA 2 cut(s) 88, 172
BcoDI GTCTC 1 cut(s) 728
BcuI ACTAGT 2 cut(s) 442, 740
BfaI CTAG 3 cut(s) 443, 741, 857
BfmI CTRYAG 1 cut(s) 588
BfoI RGCGCY 1 cut(s) 788
BisI GCNGC 5 cut(s) 315, 549, 606, 861, 1286
BlsI GCNGC 5 cut(s) 316, 550, 607, 862, 1287
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 1170
BmgT120I GGNCC 1 cut(s) 556
BmrFI CCNGG 1 cut(s) 1170
BmsI GCATC 6 cut(s) 369, 617, 694, 821, 1195, 1307
BpiI GAAGAC 1 cut(s) 1257
Bpu10I CCTNAGC 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 462
BpuEI CTTGAG 1 cut(s) 710
BsaJI CCNNGG 2 cut(s) 307, 559
Bsc4I CCNNNNNNNGG 4 cut(s) 257, 374, 375, 544
Bse1I ACTGG 1 cut(s) 1178
Bse3DI GCAATG 5 cut(s) 307, 558, 644, 810, 852
BseBI CCWGG 1 cut(s) 1170
BseDI CCNNGG 2 cut(s) 307, 559
BseGI GGATG 2 cut(s) 384, 1145
BseLI CCNNNNNNNGG 4 cut(s) 257, 374, 375, 544
BseMI GCAATG 5 cut(s) 307, 558, 644, 810, 852
BseMII CTCAG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 1178
BseRI GAGGAG 1 cut(s) 42
BseXI GCAGC 5 cut(s) 301, 560, 617, 872, 1272
BseYI CCCAGC 2 cut(s) 374, 543
Bsh1236I CGCG 1 cut(s) 768
BshFI GGCC 2 cut(s) 558, 841
BslFI GGGAC 2 cut(s) 327, 905
BslI CCNNNNNNNGG 4 cut(s) 257, 374, 375, 544
BsmAI GTCTC 1 cut(s) 728
BsmBI CGTCTC 1 cut(s) 728
BsmFI GGGAC 2 cut(s) 327, 905
BsnI GGCC 2 cut(s) 558, 841
Bsp119I TTCGAA 1 cut(s) 462
Bsp143I GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
Bsp19I CCATGG 1 cut(s) 307
BspACI CCGC 2 cut(s) 871, 1023
BspANI GGCC 2 cut(s) 558, 841
BspCNI CTCAG 1 cut(s) 249
BspFNI CGCG 1 cut(s) 768
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 1 cut(s) 195
BspQI GCTCTTC 1 cut(s) 585
BspT104I TTCGAA 1 cut(s) 462
BsrDI GCAATG 5 cut(s) 307, 558, 644, 810, 852
BsrI ACTGG 1 cut(s) 1178
BssECI CCNNGG 2 cut(s) 307, 559
BssMI GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
BssT1I CCWWGG 2 cut(s) 307, 559
Bst2UI CCWGG 1 cut(s) 1170
Bst4CI ACNGT 2 cut(s) 169, 341
Bst6I CTCTTC 3 cut(s) 131, 585, 957
BstAPI GCANNNNNTGC 1 cut(s) 1107
BstBI TTCGAA 1 cut(s) 462
BstC8I GCNNGC 2 cut(s) 843, 1290
BstDEI CTNAG 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 2 cut(s) 384, 1145
BstFNI CGCG 1 cut(s) 768
BstH2I RGCGCY 1 cut(s) 788
BstHHI GCGC 1 cut(s) 787
BstKTI GATC 7 cut(s) 18, 91, 175, 203, 294, 507, 821
BstMAI GTCTC 1 cut(s) 728
BstMBI GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
BstMWI GCNNNNNNNGC 4 cut(s) 809, 1107, 1116, 1174
BstNI CCWGG 1 cut(s) 1170
BstNSI RCATGY 2 cut(s) 871, 1098
BstSCI CCNGG 1 cut(s) 1168
BstSFI CTRYAG 1 cut(s) 588
BstUI CGCG 1 cut(s) 768
BstV1I GCAGC 5 cut(s) 301, 560, 617, 872, 1272
BstV2I GAAGAC 1 cut(s) 1257
BstX2I RGATCY 1 cut(s) 200
BstXI CCANNNNNNTGG 1 cut(s) 898
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 2 cut(s) 558, 841
BtgI CCRYGG 1 cut(s) 307
BtsCI GGATG 2 cut(s) 384, 1145
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 2 cut(s) 843, 1290
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 1 cut(s) 787
Cfr13I GGNCC 1 cut(s) 556
Csp6I GTAC 1 cut(s) 144
CviAII CATG 6 cut(s) 308, 371, 868, 1055, 1095, 1258
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 236
DpnI GATC 7 cut(s) 17, 90, 174, 202, 293, 506, 820
DpnII GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
DraI TTTAAA 2 cut(s) 997, 1246
Eam1104I CTCTTC 3 cut(s) 131, 585, 957
EarI CTCTTC 3 cut(s) 131, 585, 957
Eco130I CCWWGG 2 cut(s) 307, 559
Eco32I GATATC 1 cut(s) 1033
Eco47III AGCGCT 1 cut(s) 786
Eco57I CTGAAG 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 1168
EcoRV GATATC 1 cut(s) 1033
EcoT14I CCWWGG 2 cut(s) 307, 559
EcoT22I ATGCAT 1 cut(s) 1300
ErhI CCWWGG 2 cut(s) 307, 559
Esp3I CGTCTC 1 cut(s) 728
FaeI CATG 6 cut(s) 311, 374, 871, 1058, 1098, 1261
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FaqI GGGAC 2 cut(s) 327, 905
FatI CATG 6 cut(s) 307, 370, 867, 1054, 1094, 1257
FauNDI CATATG 1 cut(s) 1294
FbaI TGATCA 2 cut(s) 88, 172
Fnu4HI GCNGC 5 cut(s) 315, 549, 606, 861, 1286
FokI GGATG 2 cut(s) 391, 1152
Fsp4HI GCNGC 5 cut(s) 315, 549, 606, 861, 1286
FspBI CTAG 3 cut(s) 443, 741, 857
GlaI GCGC 1 cut(s) 786
GluI GCNGC 5 cut(s) 315, 549, 606, 861, 1286
GsaI CCCAGC 2 cut(s) 378, 547
HaeII RGCGCY 1 cut(s) 788
HaeIII GGCC 2 cut(s) 558, 841
HhaI GCGC 1 cut(s) 787
Hin1II CATG 6 cut(s) 311, 374, 871, 1058, 1098, 1261
Hin6I GCGC 1 cut(s) 785
HinP1I GCGC 1 cut(s) 785
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 2 cut(s) 206, 958
HinfI GANTC 1 cut(s) 410
HphI GGTGA 3 cut(s) 47, 167, 1229
Hpy166II GTNNAC 2 cut(s) 337, 616
Hpy188I TCNGA 3 cut(s) 213, 229, 527
Hpy188III TCNNGA 2 cut(s) 816, 1183
Hpy8I GTNNAC 2 cut(s) 337, 616
HpyAV CCTTC 3 cut(s) 262, 974, 1214
HpyCH4III ACNGT 2 cut(s) 169, 341
HpyCH4IV ACGT 2 cut(s) 721, 893
HpyF10VI GCNNNNNNNGC 4 cut(s) 809, 1107, 1116, 1174
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 2 cut(s) 721, 893
Hsp92II CATG 6 cut(s) 311, 374, 871, 1058, 1098, 1261
HspAI GCGC 1 cut(s) 785
Ksp22I TGATCA 2 cut(s) 88, 172
Kzo9I GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 1 cut(s) 1282
LpnPI CCDG 9 cut(s) 114, 243, 360, 529, 642, 855, 1155, 1182, 1191
Lsp1109I GCAGC 5 cut(s) 301, 560, 617, 872, 1272
LweI GCATC 6 cut(s) 369, 617, 694, 821, 1195, 1307
MaeI CTAG 3 cut(s) 443, 741, 857
MaeII ACGT 2 cut(s) 721, 893
MaeIII GTNAC 2 cut(s) 832, 1159
MalI GATC 7 cut(s) 17, 90, 174, 202, 293, 506, 820
MboI GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
MboII GAAGA 9 cut(s) 118, 273, 451, 572, 686, 702, 944, 1070, 1262
MfeI CAATTG 1 cut(s) 480
MflI RGATCY 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 608, 785
MnlI CCTC 5 cut(s) 63, 126, 245, 718, 937
Mph1103I ATGCAT 1 cut(s) 1300
MseI TTAA 5 cut(s) 896, 996, 1064, 1245, 1321
MslI CAYNNNNRTG 1 cut(s) 896
MspR9I CCNGG 1 cut(s) 1170
MunI CAATTG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 1170
MvnI CGCG 1 cut(s) 768
MwoI GCNNNNNNNGC 4 cut(s) 809, 1107, 1116, 1174
NcoI CCATGG 1 cut(s) 307
NdeI CATATG 1 cut(s) 1294
NdeII GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
NlaIII CATG 6 cut(s) 311, 374, 871, 1058, 1098, 1261
NmuCI GTSAC 1 cut(s) 1159
NsiI ATGCAT 1 cut(s) 1300
NspI RCATGY 2 cut(s) 871, 1098
NspV TTCGAA 1 cut(s) 462
PciI ACATGT 1 cut(s) 1094
PciSI GCTCTTC 1 cut(s) 585
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 5 cut(s) 316, 550, 607, 862, 1287
PscI ACATGT 1 cut(s) 1094
Psp6I CCWGG 1 cut(s) 1168
PspFI CCCAGC 2 cut(s) 374, 543
PspGI CCWGG 1 cut(s) 1168
PspPI GGNCC 1 cut(s) 556
PstI CTGCAG 1 cut(s) 592
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 896
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 5 cut(s) 896, 996, 1064, 1245, 1321
SatI GCNGC 5 cut(s) 315, 549, 606, 861, 1286
Sau3AI GATC 7 cut(s) 15, 88, 172, 200, 291, 504, 818
Sau96I GGNCC 1 cut(s) 556
ScaI AGTACT 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 1170
SfaNI GCATC 6 cut(s) 369, 617, 694, 821, 1195, 1307
SfcI CTRYAG 1 cut(s) 588
SfuI TTCGAA 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 896
SmlI CTYRAG 1 cut(s) 725
SmoI CTYRAG 1 cut(s) 725
SpeI ACTAGT 2 cut(s) 442, 740
SsiI CCGC 2 cut(s) 871, 1023
SspI AATATT 3 cut(s) 267, 283, 715
SspMI CTAG 3 cut(s) 443, 741, 857
StyD4I CCNGG 1 cut(s) 1168
StyI CCWWGG 2 cut(s) 307, 559
TaaI ACNGT 2 cut(s) 169, 341
TaiI ACGT 2 cut(s) 724, 896
TaqI TCGA 3 cut(s) 18, 290, 462
TatI WGTACW 1 cut(s) 143
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 5 cut(s) 896, 996, 1064, 1245, 1321
Tru9I TTAA 5 cut(s) 896, 996, 1064, 1245, 1321
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 1159
TseI GCWGC 5 cut(s) 314, 548, 605, 860, 1285
Tsp45I GTSAC 1 cut(s) 1159
TspDTI ATGAA 5 cut(s) 39, 210, 687, 1071, 1140
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 1 cut(s) 571
XapI RAATTY 2 cut(s) 593, 992
XceI RCATGY 2 cut(s) 871, 1098
XspI CTAG 3 cut(s) 443, 741, 857
ZrmI AGTACT 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.