Rw4G012100

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
28442730 .. 28444157
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G012100.1

Sequence Viewer

Length: 1428 bp
ATGAGAGAAGCTGACTTCCATTACATCATCATCTGTCTTTATATAGGTGAAATTTTTATTAAGAAACTCATATACGTTTGGAGCAAAATGTGTTCAGAAATAGTGATCGAAGTAATCAGTAAGGAAACAGTTACACCATCATCTTCTTCTCTTCACCACCTTAGAACTTCCAACCTCTCTATTTTTGATCATCTTTTACCAGACTTGTATGTCCCCATACTTTTCTTCTATCCCAACAATAATATTACTGATCATAAGATCAATATAATTGATCATCACCACTCTATGATTACCGAAAGATCTAAGCTTCTGAAAACTTCATTATCTAAAACCCTCAGCCGCTTCTATCCCTTTGCAGGAAAAATATTTAGCCACAACAACATTCTTTCAATCTGTTGCAATGACAATGGGGCTGAATTTATTGAAACTCGTGTCAATTGTCCCATATCAAAGGTTATGGAAAAGCACAATTCTGGGATACTGAGTCAATTACTTCCAAATGACCTACAATCAACATTTGAAAGCACAGGCTATCTCCTATTAGTCCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGATTACCATTTCACACAAGATCGCGGACGGGTTTACACTCGGAACGTTCATCCGTAGCTGGGCAGCAATGTGCCTTGGCTCTGATGTAGTGGCTCTTCCAGCTATAGAATTTGGTGTTCCAGCATCTCTTTACCCACAACCAGATTTATTCATCAACTCATTGTCAACTTCCAAGGAATATGTTAATAGTGAAGCTTGCGTCAATAAGATATTTGTGTTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACCAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGACAGCACTTCTCTGGAAATGTGCAATGGAAGCATCAAGATCAAACTTGAGTTTTACAAGGCCAGCTATGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGAAGCATCCCAATTTAATGGGAAATCTTGTAGGACATGTCTTTGCAGCAAAGACACAAGAAGGTGATACAACTCTTCAAAGCTTAGTTGCTATAATCAGGAAAAGCATTGAGGAATTTAAAGTGAAATATGGTGAGGGAGTTAGCGGGGATGCTATTTGCCAAAATTTTAAAGAGCATGGAGATTTAATGGATAATAATGATATAAATAACTATATCTGCAGTAGTTGGTGCAGGTTTGGCTTTTATGAAGCCAATTTTGGATGGGGAAAGCCATCTTGGGTCACTTTTCCAGGTATGAAAATCAAGAATACAATTGTGTTGATTGATACAAAAGACGGTGAAGGCATGGAAGCATTCTTGAGTTTAAAAGAAGAGGACATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTCAATCCCACTGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.08

Weight (kDa)

6.4

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 36 - 464 1.6e-82 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 1206
AccII CGCG 1 cut(s) 608
AciI CCGC 4 cut(s) 340, 608, 973, 1128
AclI AACGTT 1 cut(s) 629
AcsI RAATTY 5 cut(s) 51, 416, 692, 1097, 1147
AfaI GTAC 1 cut(s) 822
AfiI CCNNNNNNNGG 2 cut(s) 356, 643
AflIII ACRYGT 1 cut(s) 1018
AgsI TTSAA 8 cut(s) 390, 425, 521, 563, 875, 985, 1061, 1376
AjnI CCWGG 1 cut(s) 1273
AjuI GAANNNNNNNTTGG 4 cut(s) 1224, 1243, 1256, 1275
AluBI AGCT 8 cut(s) 11, 307, 642, 686, 779, 947, 1065, 1390
AluI AGCT 8 cut(s) 11, 307, 642, 686, 779, 947, 1065, 1390
Alw26I GTCTC 1 cut(s) 830
AoxI GGCC 1 cut(s) 941
ApeKI GCWGC 4 cut(s) 647, 962, 1028, 1390
ApoI RAATTY 5 cut(s) 51, 416, 692, 1097, 1147
AsuHPI GGTGA 6 cut(s) 59, 146, 269, 1058, 1127, 1334
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
BauI CACGAG 2 cut(s) 429, 867
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 4 cut(s) 659, 974, 1040, 1377
BccI CCATC 3 cut(s) 145, 1239, 1264
BciT130I CCWGG 1 cut(s) 1275
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 3 cut(s) 187, 250, 271
BcoDI GTCTC 1 cut(s) 830
BfaI CTAG 1 cut(s) 959
BfmI CTRYAG 2 cut(s) 687, 1201
BfuAI ACCTGC 1 cut(s) 1206
BfuI GTATCC 1 cut(s) 471
BglII AGATCT 1 cut(s) 299
BisI GCNGC 5 cut(s) 340, 648, 963, 1029, 1391
BlsI GCNGC 5 cut(s) 341, 649, 964, 1030, 1392
Bme1390I CCNGG 1 cut(s) 1275
BmrFI CCNGG 1 cut(s) 1275
BmsI GCATC 5 cut(s) 716, 796, 923, 997, 1123
Bpu10I CCTNAGC 1 cut(s) 335
BpuEI CTTGAG 3 cut(s) 812, 949, 1363
BsaJI CCNNGG 2 cut(s) 658, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 643
Bse1I ACTGG 1 cut(s) 843
Bse3DI GCAATG 3 cut(s) 406, 657, 912
BseBI CCWGG 1 cut(s) 1275
BseDI CCNNGG 2 cut(s) 658, 756
BseGI GGATG 4 cut(s) 633, 988, 1138, 1250
BseLI CCNNNNNNNGG 2 cut(s) 356, 643
BseMI GCAATG 3 cut(s) 406, 657, 912
BseMII CTCAG 2 cut(s) 349, 473
BseNI ACTGG 1 cut(s) 843
BseXI GCAGC 4 cut(s) 659, 974, 1040, 1377
BseYI CCCAGC 1 cut(s) 642
BsgI GTGCAG 1 cut(s) 1234
Bsh1236I CGCG 1 cut(s) 608
BshFI GGCC 1 cut(s) 943
BslFI GGGAC 2 cut(s) 197, 426
BslI CCNNNNNNNGG 2 cut(s) 356, 643
BsmAI GTCTC 1 cut(s) 830
BsmBI CGTCTC 1 cut(s) 830
BsmFI GGGAC 2 cut(s) 197, 426
BsmI GAATGC 1 cut(s) 1337
BsnI GGCC 1 cut(s) 943
Bsp143I GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
BspACI CCGC 4 cut(s) 340, 608, 973, 1128
BspANI GGCC 1 cut(s) 943
BspCNI CTCAG 2 cut(s) 348, 474
BspFNI CGCG 1 cut(s) 608
BspMAI CTGCAG 1 cut(s) 1205
BspMI ACCTGC 1 cut(s) 1206
BspQI GCTCTTC 1 cut(s) 684
BsrDI GCAATG 3 cut(s) 406, 657, 912
BsrI ACTGG 1 cut(s) 843
BssECI CCNNGG 2 cut(s) 658, 756
BssMI GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
BssSI CACGAG 2 cut(s) 429, 867
BssT1I CCWWGG 2 cut(s) 658, 756
Bst2BI CACGAG 2 cut(s) 429, 867
Bst2UI CCWGG 1 cut(s) 1275
Bst4CI ACNGT 4 cut(s) 130, 853, 1322, 1420
Bst6I CTCTTC 4 cut(s) 156, 684, 1062, 1350
BstC8I GCNNGC 3 cut(s) 781, 945, 1395
BstDEI CTNAG 5 cut(s) 161, 303, 335, 482, 1066
BstF5I GGATG 4 cut(s) 633, 988, 1138, 1250
BstFNI CGCG 1 cut(s) 608
BstKTI GATC 8 cut(s) 108, 190, 253, 261, 274, 302, 606, 923
BstMAI GTCTC 1 cut(s) 830
BstMBI GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
BstMWI GCNNNNNNNGC 5 cut(s) 683, 845, 911, 949, 1221
BstNI CCWGG 1 cut(s) 1275
BstNSI RCATGY 2 cut(s) 973, 1022
BstSCI CCNGG 1 cut(s) 1273
BstSFI CTRYAG 2 cut(s) 687, 1201
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 4 cut(s) 659, 974, 1040, 1377
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 1000
BstYI RGATCY 1 cut(s) 299
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 1 cut(s) 943
BtsCI GGATG 4 cut(s) 633, 988, 1138, 1250
BtsIMutI CAGTG 2 cut(s) 850, 1416
BveI ACCTGC 1 cut(s) 1206
Cac8I GCNNGC 3 cut(s) 781, 945, 1395
CseI GACGC 1 cut(s) 772
Csp6I GTAC 1 cut(s) 821
CviAII CATG 5 cut(s) 970, 1019, 1160, 1330, 1363
CviQI GTAC 1 cut(s) 821
DdeI CTNAG 5 cut(s) 161, 303, 335, 482, 1066
DpnI GATC 8 cut(s) 107, 189, 252, 260, 273, 301, 605, 922
DpnII GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
DraI TTTAAA 3 cut(s) 1102, 1153, 1350
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 4 cut(s) 156, 684, 1062, 1350
EarI CTCTTC 4 cut(s) 156, 684, 1062, 1350
Eco130I CCWWGG 2 cut(s) 658, 756
EcoRII CCWGG 1 cut(s) 1273
EcoT14I CCWWGG 2 cut(s) 658, 756
ErhI CCWWGG 2 cut(s) 658, 756
Esp3I CGTCTC 1 cut(s) 830
FaeI CATG 5 cut(s) 973, 1022, 1163, 1333, 1366
FaqI GGGAC 2 cut(s) 197, 426
FatI CATG 5 cut(s) 969, 1018, 1159, 1329, 1362
FauI CCCGC 1 cut(s) 1121
FauNDI CATATG 1 cut(s) 1399
FbaI TGATCA 3 cut(s) 187, 250, 271
Fnu4HI GCNGC 5 cut(s) 340, 648, 963, 1029, 1391
FokI GGATG 4 cut(s) 620, 975, 1145, 1257
Fsp4HI GCNGC 5 cut(s) 340, 648, 963, 1029, 1391
FspBI CTAG 1 cut(s) 959
GluI GCNGC 5 cut(s) 340, 648, 963, 1029, 1391
GsaI CCCAGC 1 cut(s) 646
HaeIII GGCC 1 cut(s) 943
HgaI GACGC 1 cut(s) 772
Hin1II CATG 5 cut(s) 973, 1022, 1163, 1333, 1366
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HindIII AAGCTT 3 cut(s) 305, 777, 1063
HinfI GANTC 1 cut(s) 484
HphI GGTGA 6 cut(s) 59, 146, 269, 1058, 1127, 1334
Hpy166II GTNNAC 3 cut(s) 572, 618, 750
Hpy188I TCNGA 4 cut(s) 97, 312, 626, 667
Hpy188III TCNNGA 5 cut(s) 895, 918, 1081, 1288, 1342
Hpy8I GTNNAC 3 cut(s) 572, 618, 750
HpyAV CCTTC 2 cut(s) 1037, 1319
HpyCH4III ACNGT 4 cut(s) 130, 853, 1322, 1420
HpyCH4IV ACGT 3 cut(s) 75, 629, 823
HpyCH4V TGCA 8 cut(s) 356, 399, 578, 905, 1028, 1203, 1215, 1397
HpyF10VI GCNNNNNNNGC 5 cut(s) 683, 845, 911, 949, 1221
HpyF3I CTNAG 5 cut(s) 161, 303, 335, 482, 1066
HpySE526I ACGT 3 cut(s) 75, 629, 823
Hsp92II CATG 5 cut(s) 973, 1022, 1163, 1333, 1366
Ksp22I TGATCA 3 cut(s) 187, 250, 271
Kzo9I GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 2 cut(s) 81, 1387
Lsp1109I GCAGC 4 cut(s) 659, 974, 1040, 1377
LweI GCATC 5 cut(s) 716, 796, 923, 997, 1123
MaeI CTAG 1 cut(s) 959
MaeII ACGT 3 cut(s) 75, 629, 823
MaeIII GTNAC 3 cut(s) 130, 880, 1264
MalI GATC 8 cut(s) 107, 189, 252, 260, 273, 301, 605, 922
MboI GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
MboII GAAGA 7 cut(s) 135, 138, 143, 217, 671, 1049, 1367
MfeI CAATTG 3 cut(s) 436, 579, 1296
MflI RGATCY 1 cut(s) 299
MlyI GAGTC 1 cut(s) 493
MmeI TCCRAC 2 cut(s) 195, 887
MnlI CCTC 6 cut(s) 185, 344, 820, 1087, 1111, 1351
MseI TTAA 7 cut(s) 60, 768, 998, 1101, 1152, 1169, 1349
MspR9I CCNGG 1 cut(s) 1275
MunI CAATTG 3 cut(s) 436, 579, 1296
Mva1269I GAATGC 1 cut(s) 1337
MvaI CCWGG 1 cut(s) 1275
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 5 cut(s) 683, 845, 911, 949, 1221
NdeI CATATG 1 cut(s) 1399
NdeII GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
NlaIII CATG 5 cut(s) 973, 1022, 1163, 1333, 1366
NmuCI GTSAC 2 cut(s) 880, 1264
NspI RCATGY 2 cut(s) 973, 1022
PciI ACATGT 1 cut(s) 1018
PciSI GCTCTTC 1 cut(s) 684
PctI GAATGC 1 cut(s) 1337
PkrI GCNGC 5 cut(s) 341, 649, 964, 1030, 1392
PleI GAGTC 1 cut(s) 492
PpsI GAGTC 1 cut(s) 492
PscI ACATGT 1 cut(s) 1018
Psp1406I AACGTT 1 cut(s) 629
Psp6I CCWGG 1 cut(s) 1273
PspFI CCCAGC 1 cut(s) 642
PspGI CCWGG 1 cut(s) 1273
PstI CTGCAG 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 1 cut(s) 822
RsaNI GTAC 1 cut(s) 821
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 7 cut(s) 60, 768, 998, 1101, 1152, 1169, 1349
SatI GCNGC 5 cut(s) 340, 648, 963, 1029, 1391
Sau3AI GATC 8 cut(s) 105, 187, 250, 258, 271, 299, 603, 920
SchI GAGTC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 1275
SfaNI GCATC 5 cut(s) 716, 796, 923, 997, 1123
SfcI CTRYAG 2 cut(s) 687, 1201
SmlI CTYRAG 3 cut(s) 827, 928, 1342
SmoI CTYRAG 3 cut(s) 827, 928, 1342
SsiI CCGC 4 cut(s) 340, 608, 973, 1128
SspI AATATT 3 cut(s) 244, 366, 817
SspMI CTAG 1 cut(s) 959
StyD4I CCNGG 1 cut(s) 1273
StyI CCWWGG 2 cut(s) 658, 756
TaaI ACNGT 4 cut(s) 130, 853, 1322, 1420
TaiI ACGT 3 cut(s) 78, 632, 826
TaqI TCGA 1 cut(s) 108
TauI GCSGC 1 cut(s) 342
Tru1I TTAA 7 cut(s) 60, 768, 998, 1101, 1152, 1169, 1349
Tru9I TTAA 7 cut(s) 60, 768, 998, 1101, 1152, 1169, 1349
TscAI CASTG 2 cut(s) 850, 1423
TseFI GTSAC 2 cut(s) 880, 1264
TseI GCWGC 4 cut(s) 647, 962, 1028, 1390
Tsp45I GTSAC 2 cut(s) 880, 1264
TspDTI ATGAA 5 cut(s) 309, 622, 724, 1245, 1295
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 2 cut(s) 850, 1423
XapI RAATTY 5 cut(s) 51, 416, 692, 1097, 1147
XceI RCATGY 2 cut(s) 973, 1022
XspI CTAG 1 cut(s) 959
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.