Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000172.1

Orthogroup ID

OG0000200

Physical Location & Seq

Genomic Coordinates Reverse (-)

135283 .. 136690

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000172.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggatacacagatgaaggttgaaatcattgagaggaaaataattaagccatcctccccaactcctcatcatcttagaaattttgagctgtcatttttcgatcagatggcaattacaatttacactccactccttctcttctttccaaatactacttctattaagcttgaaatatgtgagcatctaacagaatcattaggtaaaactctcactcacttctaccctttagcaggaagaattaaaggtaatacagtggtcgaatgtaatgatgatggagctgaatttgtcaaagcgcaagtcacctgttccttatcagattttctagaaaatccagaagccgcgatattagaacagttccttccagctgagattttatccaaggaggcagggactggtcctttgcttcttgtgcaagtcaacttgttcgagtgtggtggaatggcaattgggtttagcatttcacataagattgctgatgcctccacactgtccacattcatcaattgctgggctcaagtaacaaatacaaccagtactgatagtgaggtaatggttccagaatttggttcggcatctctctttccaccacaagatttctctaatgactcttcacagtcaccagcccgagtatactccaaaaagaacatcaatataacaaggagaagcgatttcagcactcatttggaaatgtgcagtcgaagcatcgacttcaaaatcatgatctcaaaggccatcagtattcagccaagatgtttttatagatcaaaggctgaagttgaagacggtactgttgtggccatagatctaaaagacttggtttctaaattcagggaagggattgaaaactatgctgctataacaaaaaccatatttggttctgatgaagcatggcaagggatcaaagataggtacaagaacctgaaaaaaagtgatgacatggagttctacagctgcacaagttggtgtaggtttcctttttatgaagcagattttggatggggaaagccaaaatgggtgagcattgctagtgtatcaattgaaaatattattgttttgttggataaaagagatgggaatggaatagaagcatggttgactatgaaccaagaatacatggccttatttgagagcagtacagagctgcttgcatatgcttctgtaaatccaagtgtcacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006807 GO:0008150 GO:0008152 GO:0009820 GO:0016740 GO:0016746 GO:0016747 GO:0050636 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110

Pfam Domains

Protein Families

Transferase

Protein Analysis

392

Amino Acids

43.98

Weight (kDa)

5.06

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24420 AT1G24420
fragaria_vesca	FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica	MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica	Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis	pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis	RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata	RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora	Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii	Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa	Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha	Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana	Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccI	GTMKAC	1 cut(s)	630
AccII	CGCG	1 cut(s)	341
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	1 cut(s)	905
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	4 cut(s)	79, 281, 560, 824
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	4 cut(s)	535, 787, 911, 1135
AfiI	CCNNNNNNNGG	2 cut(s)	230, 563
AgsI	TTSAA	6 cut(s)	23, 170, 712, 779, 842, 1040
AjuI	GAANNNNNNNTTGG	4 cut(s)	139, 171, 975, 1007
AluBI	AGCT	6 cut(s)	88, 166, 278, 365, 951, 1141
AluI	AGCT	6 cut(s)	88, 166, 278, 365, 951, 1141
AlwI	GGATC	1 cut(s)	905
AlwNI	CAGNNNCTG	1 cut(s)	392
Ama87I	CYCGRG	1 cut(s)	624
AoxI	GGCC	3 cut(s)	729, 795, 1116
ApeKI	GCWGC	3 cut(s)	851, 951, 1141
ApoI	RAATTY	4 cut(s)	79, 281, 560, 824
ArsI	GACNNNNNNTTYG	4 cut(s)	282, 314, 382, 414
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	292, 609, 1027, 1165
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	395
BaeI	ACNNNNGTAYC	2 cut(s)	777, 810
BalI	TGGCCA	1 cut(s)	797
BanII	GRGCYC	1 cut(s)	514
BbsI	GAAGAC	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	838, 938, 1128
BccI	CCATC	6 cut(s)	58, 100, 266, 740, 990, 1064
BfaI	CTAG	2 cut(s)	323, 1026
BfmI	CTRYAG	1 cut(s)	946
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	4 cut(s)	339, 852, 952, 1142
BlsI	GCNGC	4 cut(s)	340, 853, 953, 1143
BmcAI	AGTACT	1 cut(s)	535
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	555
BmsI	GCATC	4 cut(s)	190, 466, 581, 711
BpiI	GAAGAC	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 563
Bse1I	ACTGG	2 cut(s)	397, 531
Bse3DI	GCAATG	1 cut(s)	1020
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	2 cut(s)	50, 1001
BseLI	CCNNNNNNNGG	2 cut(s)	230, 563
BseMI	GCAATG	1 cut(s)	1020
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	397, 531
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	3 cut(s)	838, 938, 1128
BseYI	CCCAGC	1 cut(s)	507
BsgI	GTGCAG	2 cut(s)	712, 937
Bsh1236I	CGCG	1 cut(s)	341
BshFI	GGCC	3 cut(s)	731, 797, 1118
BsiHKCI	CYCGRG	1 cut(s)	624
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	2 cut(s)	230, 563
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	3 cut(s)	731, 797, 1118
BsoBI	CYCGRG	1 cut(s)	624
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	5 cut(s)	100, 720, 761, 802, 897
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	3 cut(s)	731, 797, 1118
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	341
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	1 cut(s)	555
BspPI	GGATC	1 cut(s)	905
BsrDI	GCAATG	1 cut(s)	1020
BsrI	ACTGG	2 cut(s)	397, 531
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	5 cut(s)	100, 720, 761, 802, 897
BssNAI	GTATAC	1 cut(s)	631
BssT1I	CCWWGG	1 cut(s)	378
Bst1107I	GTATAC	1 cut(s)	631
Bst4CI	ACNGT	6 cut(s)	253, 354, 489, 615, 785, 790
Bst6I	CTCTTC	2 cut(s)	143, 613
BstC8I	GCNNGC	1 cut(s)	1146
BstDEI	CTNAG	2 cut(s)	74, 366
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	50, 1001
BstFNI	CGCG	1 cut(s)	341
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	5 cut(s)	103, 723, 764, 805, 900
BstMBI	GATC	5 cut(s)	100, 720, 761, 802, 897
BstMWI	GCNNNNNNNGC	3 cut(s)	409, 672, 699
BstSFI	CTRYAG	1 cut(s)	946
BstUI	CGCG	1 cut(s)	341
BstV1I	GCAGC	3 cut(s)	838, 938, 1128
BstV2I	GAAGAC	1 cut(s)	786
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BstZ17I	GTATAC	1 cut(s)	631
BsuRI	GGCC	3 cut(s)	731, 797, 1118
BtsCI	GGATG	2 cut(s)	50, 1001
BtsIMutI	CAGTG	2 cut(s)	258, 485
Cac8I	GCNNGC	1 cut(s)	1146
CaiI	CAGNNNCTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	4 cut(s)	534, 786, 910, 1134
CviAII	CATG	5 cut(s)	718, 888, 937, 1089, 1114
CviQI	GTAC	4 cut(s)	534, 786, 910, 1134
DdeI	CTNAG	2 cut(s)	74, 366
DpnI	GATC	5 cut(s)	102, 722, 763, 804, 899
DpnII	GATC	5 cut(s)	100, 720, 761, 802, 897
EaeI	YGGCCR	1 cut(s)	795
Eam1104I	CTCTTC	2 cut(s)	143, 613
EarI	CTCTTC	2 cut(s)	143, 613
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	1 cut(s)	792
Eco88I	CYCGRG	1 cut(s)	624
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	514
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	5 cut(s)	721, 891, 940, 1092, 1117
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	5 cut(s)	717, 887, 936, 1088, 1113
FauNDI	CATATG	1 cut(s)	1150
FblI	GTMKAC	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	339, 852, 952, 1142
FokI	GGATG	2 cut(s)	37, 1008
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	4 cut(s)	339, 852, 952, 1142
FspBI	CTAG	2 cut(s)	323, 1026
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	4 cut(s)	339, 852, 952, 1142
GsaI	CCCAGC	1 cut(s)	511
HaeIII	GGCC	3 cut(s)	731, 797, 1118
HhaI	GCGC	1 cut(s)	295
Hin1II	CATG	5 cut(s)	721, 891, 940, 1092, 1117
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HincII	GTYRAC	2 cut(s)	418, 1095
HindII	GTYRAC	2 cut(s)	418, 1095
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	2 cut(s)	191, 605
HphI	GGTGA	4 cut(s)	292, 609, 1027, 1165
Hpy166II	GTNNAC	4 cut(s)	418, 492, 631, 1095
Hpy188I	TCNGA	3 cut(s)	105, 316, 880
Hpy188III	TCNNGA	4 cut(s)	323, 332, 557, 718
Hpy8I	GTNNAC	4 cut(s)	418, 492, 631, 1095
HpyAV	CCTTC	4 cut(s)	10, 143, 368, 827
HpyCH4III	ACNGT	6 cut(s)	253, 354, 489, 615, 785, 790
HpyCH4V	TGCA	4 cut(s)	412, 693, 954, 1148
HpyF10VI	GCNNNNNNNGC	3 cut(s)	409, 672, 699
HpyF3I	CTNAG	2 cut(s)	74, 366
Hsp92II	CATG	5 cut(s)	721, 891, 940, 1092, 1117
HspAI	GCGC	1 cut(s)	293
Kzo9I	GATC	5 cut(s)	100, 720, 761, 802, 897
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	3 cut(s)	838, 938, 1128
LweI	GCATC	4 cut(s)	190, 466, 581, 711
MaeI	CTAG	2 cut(s)	323, 1026
MaeIII	GTNAC	4 cut(s)	298, 517, 615, 1171
MalI	GATC	5 cut(s)	102, 722, 763, 804, 899
MboI	GATC	5 cut(s)	100, 720, 761, 802, 897
MboII	GAAGA	4 cut(s)	130, 246, 600, 791
MfeI	CAATTG	3 cut(s)	444, 502, 1035
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	1 cut(s)	514
MlsI	TGGCCA	1 cut(s)	797
MluNI	TGGCCA	1 cut(s)	797
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	1038
MnlI	CCTC	6 cut(s)	27, 64, 75, 376, 490, 538
Mox20I	TGGCCA	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	797
MseI	TTAA	3 cut(s)	45, 162, 240
Msp20I	TGGCCA	1 cut(s)	797
MspA1I	CMGCKG	2 cut(s)	365, 951
MunI	CAATTG	3 cut(s)	444, 502, 1035
MvnI	CGCG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	409, 672, 699
NdeI	CATATG	1 cut(s)	1150
NdeII	GATC	5 cut(s)	100, 720, 761, 802, 897
NlaIII	CATG	5 cut(s)	721, 891, 940, 1092, 1117
NlaIV	GGNNCC	1 cut(s)	555
NmuCI	GTSAC	3 cut(s)	298, 615, 1171
PagI	TCATGA	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	4 cut(s)	340, 853, 953, 1143
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PspFI	CCCAGC	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	555
PspPI	GGNCC	1 cut(s)	395
PsrI	GAACNNNNNNTAC	2 cut(s)	1094, 1126
PstNI	CAGNNNCTG	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	802
PvuII	CAGCTG	2 cut(s)	365, 951
RsaI	GTAC	4 cut(s)	535, 787, 911, 1135
RsaNI	GTAC	4 cut(s)	534, 786, 910, 1134
SaqAI	TTAA	3 cut(s)	45, 162, 240
SatI	GCNGC	4 cut(s)	339, 852, 952, 1142
Sau3AI	GATC	5 cut(s)	100, 720, 761, 802, 897
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	1 cut(s)	599
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	4 cut(s)	190, 466, 581, 711
SfcI	CTRYAG	1 cut(s)	946
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
SsiI	CCGC	1 cut(s)	339
SspI	AATATT	1 cut(s)	1045
SspMI	CTAG	2 cut(s)	323, 1026
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	6 cut(s)	253, 354, 489, 615, 785, 790
TaqI	TCGA	5 cut(s)	99, 258, 426, 697, 705
TatI	WGTACW	2 cut(s)	533, 1133
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	3 cut(s)	45, 162, 240
Tru9I	TTAA	3 cut(s)	45, 162, 240
TscAI	CASTG	2 cut(s)	258, 492
TseFI	GTSAC	3 cut(s)	298, 615, 1171
TseI	GCWGC	3 cut(s)	851, 951, 1141
Tsp45I	GTSAC	3 cut(s)	298, 615, 1171
TspDTI	ATGAA	5 cut(s)	29, 487, 897, 996, 1115
TspRI	CASTG	2 cut(s)	258, 492
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	395
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	4 cut(s)	79, 281, 560, 824
XbaI	TCTAGA	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	630
XspI	CTAG	2 cut(s)	323, 1026
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.