Rorug05G0402400

BAHD acyltransferase At5g47980-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
55300595 .. 55301290
696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0402400.1

Sequence Viewer

Length: 216 bp
ATGGCTATTCAATTGCCAGCCATTCTGCATGCTAGGCATTTCCTCCAACAAGGAAGTTTGTCCGCAAAGAAAGCAGACTCAACATATTTTGGTGTTCCAAAAGGCTTCTTAGCTGTCTATGTTGGAGAGGGTAGTGAAAAGAATAGACACATGGTTCCAGTTTCATTTTTGAGTCAACCTTCATTTCAAGAGTTGCTAAGGCGGAGGAGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

71

Amino Acids

8.01

Weight (kDa)

10.59

Isoelectric Point (pI)

76.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 22 - 68 6.2e-10 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 202
AcsI RAATTY 1 cut(s) 210
AgsI TTSAA 2 cut(s) 11, 188
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
ApoI RAATTY 1 cut(s) 210
BfaI CTAG 1 cut(s) 33
BmiI GGNNCC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 158
BspACI CCGC 2 cut(s) 63, 202
BspLI GGNNCC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 18, 30
BstDEI CTNAG 2 cut(s) 109, 197
BstMWI GCNNNNNNNGC 2 cut(s) 34, 71
BstNSI RCATGY 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 18, 30
CviAII CATG 2 cut(s) 29, 151
CviJI RGCY 4 cut(s) 5, 20, 105, 113
CviKI_1 RGCY 4 cut(s) 5, 20, 105, 113
DdeI CTNAG 2 cut(s) 109, 197
FaeI CATG 2 cut(s) 32, 154
FaiI YATR 4 cut(s) 30, 85, 120, 152
FatI CATG 2 cut(s) 28, 150
FspBI CTAG 1 cut(s) 33
Hin1II CATG 2 cut(s) 32, 154
HincII GTYRAC 1 cut(s) 176
HindII GTYRAC 1 cut(s) 176
HinfI GANTC 2 cut(s) 77, 172
Hpy166II GTNNAC 1 cut(s) 176
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 71
HpyF3I CTNAG 2 cut(s) 109, 197
Hsp92II CATG 2 cut(s) 32, 154
LpnPI CCDG 2 cut(s) 30, 171
MaeI CTAG 1 cut(s) 33
MfeI CAATTG 1 cut(s) 11
MluCI AATT 2 cut(s) 11, 210
MlyI GAGTC 2 cut(s) 71, 181
MmeI TCCRAC 2 cut(s) 70, 103
MnlI CCTC 3 cut(s) 53, 121, 198
MunI CAATTG 1 cut(s) 11
MwoI GCNNNNNNNGC 2 cut(s) 34, 71
NlaIII CATG 2 cut(s) 32, 154
NlaIV GGNNCC 1 cut(s) 156
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PleI GAGTC 2 cut(s) 71, 180
PpsI GAGTC 2 cut(s) 71, 180
PspN4I GGNNCC 1 cut(s) 156
SchI GAGTC 2 cut(s) 71, 181
SetI ASST 2 cut(s) 115, 181
SgeI CNNG 7 cut(s) 29, 41, 45, 62, 163, 170, 200
SphI GCATGC 1 cut(s) 32
Sse9I AATT 2 cut(s) 11, 210
SsiI CCGC 2 cut(s) 63, 202
SspMI CTAG 1 cut(s) 33
TasI AATT 2 cut(s) 11, 210
TspDTI ATGAA 2 cut(s) 153, 171
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 32
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.