Rmu_co8448401.1_g000001

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8448401.1
OG0000200
Physical Location & Seq
Forward (+)
318 .. 1643
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8448401.1_g000001.1.cds

Sequence Viewer

Length: 1326 bp
atgggttcagagatcaaggttgaagtcattcacaaagaaacaatcataccatcctctccaactcctccccaccttgaaagtttgagcctctctgtttttgatcagcttcaacctgaattttatgtcccacttcttctcttctatcccaacagtagcaatgagatcaatattgatcaccattctttggctgctgaaagatccagccttctaaaaacatcattgtctaaaacccttactcacttctacccctttgcaggaaaatttgaatataatgtttcgataagttgcaatgatcatggggcagcatttcttgaagcccaagtgaactgtcccatatccaaagttctggaaaaacctgatcacgaggttttaaaacaactgcttccagctgatatagcatccacacaagaagtcgcaggccaccttctactagtccaggccaacttcttcgaatgtggtgggatggcaatcggagtcaacatctcacataaggtcggtgatgcttttacattcagcaaattcattaatagctgggctgcagtttcctttggctccagtgctagtgatcatatagcggttccagctgtagaatttggtgttgtggcttctctctgtccaccgctagatttcttcaactcgcaacaacctattgttgaatttgctaaagaaaaatcggtcacagaaagatttgtgtttgaagcctcaaagattgatgctcttaagtctaaagctgccagtgccaccgtgccaaatcctacgcgtgttgaagttgtatctgcactcatttggaaatgtgccacagaagcatcaagatcaaactcaggttctgtgaggccatctgtgtggtgtcaagtggtgaacatgcggaaaagatcagggcagcccttgacagagaactcactggggaattttgtttggtactttgcatcaatgacaatggaaagtgaagtagatctccaaagcttggttgctaaattcaggaaaggcattgaggaatttaaagaaaaatatcctaatggagttagtccgcaggacgtatgtcaaaccatacaggaatctgggaacctcatgacaaaggatggtatagacaattatagttgcagcagctggtgcagatttcccttctatgaagccaattttggatggggtaagccatcatgggtgagtatccgtactatggcagcaaagaacacaattcaattgacagatgcgagagatggaaagggtatggaagtgtccttggctttgaaagaagaagatatggccataattggtagtaatgaggagctgcttgcatatgcatctctaaatccagctgctatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

441

Amino Acids

48.45

Weight (kDa)

5.39

Isoelectric Point (pI)

44.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 184, 964
AccII CGCG 1 cut(s) 760
AciI CCGC 4 cut(s) 575, 620, 865, 1028
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 1263
AcsI RAATTY 8 cut(s) 116, 260, 518, 590, 656, 907, 974, 995
AfaI GTAC 2 cut(s) 920, 1174
AfiI CCNNNNNNNGG 4 cut(s) 184, 254, 964, 1177
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 758
AhlI ACTAGT 1 cut(s) 430
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 2 cut(s) 1122, 1154
AluBI AGCT 9 cut(s) 106, 389, 531, 584, 731, 963, 1107, 1288, 1316
AluI AGCT 9 cut(s) 106, 389, 531, 584, 731, 963, 1107, 1288, 1316
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 2 cut(s) 827, 1107
AoxI GGCC 4 cut(s) 418, 438, 833, 1263
ApoI RAATTY 8 cut(s) 116, 260, 518, 590, 656, 907, 974, 995
AseI ATTAAT 1 cut(s) 525
Asp700I GAANNNNTTC 1 cut(s) 27
AsuHPI GGTGA 4 cut(s) 167, 509, 868, 1174
AsuII TTCGAA 1 cut(s) 450
BalI TGGCCA 1 cut(s) 1265
BauI CACGAG 1 cut(s) 362
BccI CCATC 7 cut(s) 58, 457, 844, 1073, 1137, 1162, 1211
BciT130I CCWGG 1 cut(s) 437
BciVI GTATCC 1 cut(s) 1178
BclI TGATCA 5 cut(s) 100, 172, 292, 358, 565
BcuI ACTAGT 1 cut(s) 430
BfaI CTAG 3 cut(s) 431, 561, 623
BfmI CTRYAG 2 cut(s) 537, 585
BfrI CTTAAG 1 cut(s) 719
BfuI GTATCC 1 cut(s) 1178
BglII AGATCT 1 cut(s) 952
Bme1390I CCNGG 1 cut(s) 437
BmiI GGNNCC 3 cut(s) 553, 579, 1064
BmrFI CCNGG 1 cut(s) 437
BmrI ACTGGG 1 cut(s) 911
BmsI GCATC 7 cut(s) 407, 490, 703, 815, 935, 1198, 1310
BmuI ACTGGG 1 cut(s) 911
BoxI GACNNNNGTC 1 cut(s) 1038
BpmI CTGGAG 1 cut(s) 538
Bpu14I TTCGAA 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 1239
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 254, 964, 1177
Bse1I ACTGG 3 cut(s) 555, 735, 906
Bse3DI GCAATG 2 cut(s) 163, 295
Bse8I GATNNNNATC 1 cut(s) 467
BseBI CCWGG 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 1239
BseGI GGATG 5 cut(s) 50, 398, 468, 1084, 1148
BseJI GATNNNNATC 1 cut(s) 467
BseLI CCNNNNNNNGG 4 cut(s) 184, 254, 964, 1177
BseMI GCAATG 2 cut(s) 163, 295
BseMII CTCAG 1 cut(s) 834
BseNI ACTGG 3 cut(s) 555, 735, 906
BseRI GAGGAG 2 cut(s) 54, 1298
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 2 cut(s) 762, 1132
Bsh1236I CGCG 1 cut(s) 760
BshFI GGCC 4 cut(s) 420, 440, 835, 1265
BslFI GGGAC 2 cut(s) 110, 315
BslI CCNNNNNNNGG 4 cut(s) 184, 254, 964, 1177
BsmFI GGGAC 2 cut(s) 110, 315
BsnI GGCC 4 cut(s) 420, 440, 835, 1265
Bsp119I TTCGAA 1 cut(s) 450
BspACI CCGC 4 cut(s) 575, 620, 865, 1028
BspANI GGCC 4 cut(s) 420, 440, 835, 1265
BspCNI CTCAG 1 cut(s) 833
BspFNI CGCG 1 cut(s) 760
BspHI TCATGA 1 cut(s) 1068
BspLI GGNNCC 3 cut(s) 553, 579, 1064
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 1 cut(s) 192
BspT104I TTCGAA 1 cut(s) 450
BspTI CTTAAG 1 cut(s) 719
BsrDI GCAATG 2 cut(s) 163, 295
BsrI ACTGG 3 cut(s) 555, 735, 906
BssECI CCNNGG 1 cut(s) 1239
BssSI CACGAG 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 1239
Bst2BI CACGAG 1 cut(s) 362
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 152, 329, 745
Bst6I CTCTTC 1 cut(s) 143
BstAFI CTTAAG 1 cut(s) 719
BstAPI GCANNNNNTGC 1 cut(s) 1110
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 418, 1293
BstDEI CTNAG 1 cut(s) 820
BstF5I GGATG 5 cut(s) 50, 398, 468, 1084, 1148
BstFNI CGCG 1 cut(s) 760
BstMWI GCNNNNNNNGC 5 cut(s) 395, 581, 737, 803, 1110
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 865
BstPAI GACNNNNGTC 1 cut(s) 1038
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 2 cut(s) 537, 585
BstUI CGCG 1 cut(s) 760
BstX2I RGATCY 2 cut(s) 197, 952
BstXI CCANNNNNNTGG 2 cut(s) 346, 843
BstYI RGATCY 2 cut(s) 197, 952
BsuI GTATCC 1 cut(s) 1178
BsuRI GGCC 4 cut(s) 420, 440, 835, 1265
BtsCI GGATG 5 cut(s) 50, 398, 468, 1084, 1148
BtsIMutI CAGTG 3 cut(s) 562, 742, 899
Cac8I GCNNGC 2 cut(s) 418, 1293
CaiI CAGNNNCTG 2 cut(s) 827, 1107
CciI TCATGA 1 cut(s) 1068
Csp6I GTAC 2 cut(s) 919, 1173
CviAII CATG 4 cut(s) 296, 862, 1069, 1158
CviQI GTAC 2 cut(s) 919, 1173
DdeI CTNAG 1 cut(s) 820
DraI TTTAAA 2 cut(s) 372, 1000
EaeI YGGCCR 1 cut(s) 1263
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 1239
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 1239
EcoT22I ATGCAT 1 cut(s) 1303
ErhI CCWWGG 1 cut(s) 1239
FaeI CATG 4 cut(s) 299, 865, 1072, 1161
FaqI GGGAC 2 cut(s) 110, 315
FatI CATG 4 cut(s) 295, 861, 1068, 1157
FauNDI CATATG 1 cut(s) 1297
FbaI TGATCA 5 cut(s) 100, 172, 292, 358, 565
FokI GGATG 5 cut(s) 37, 385, 475, 1091, 1155
FspBI CTAG 3 cut(s) 431, 561, 623
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 538
HaeIII GGCC 4 cut(s) 420, 440, 835, 1265
Hin1II CATG 4 cut(s) 299, 865, 1072, 1161
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 961
HinfI GANTC 2 cut(s) 474, 1055
HphI GGTGA 4 cut(s) 167, 509, 868, 1174
Hpy166II GTNNAC 4 cut(s) 325, 478, 617, 859
Hpy188I TCNGA 2 cut(s) 10, 473
Hpy188III TCNNGA 6 cut(s) 311, 347, 362, 810, 979, 1069
Hpy8I GTNNAC 4 cut(s) 325, 478, 617, 859
HpyAV CCTTC 3 cut(s) 215, 434, 1132
HpyCH4III ACNGT 3 cut(s) 152, 329, 745
HpyCH4IV ACGT 1 cut(s) 1035
HpyCH4V TGCA 9 cut(s) 254, 288, 539, 779, 926, 1101, 1113, 1295, 1301
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 581, 737, 803, 1110
HpyF3I CTNAG 1 cut(s) 820
HpySE526I ACGT 1 cut(s) 1035
Hsp92II CATG 4 cut(s) 299, 865, 1072, 1161
Ksp22I TGATCA 5 cut(s) 100, 172, 292, 358, 565
LmnI GCTCC 2 cut(s) 557, 1285
LweI GCATC 7 cut(s) 407, 490, 703, 815, 935, 1198, 1310
MaeI CTAG 3 cut(s) 431, 561, 623
MaeII ACGT 1 cut(s) 1035
MaeIII GTNAC 1 cut(s) 676
MboII GAAGA 6 cut(s) 125, 130, 439, 622, 1265, 1268
MfeI CAATTG 1 cut(s) 1199
MflI RGATCY 2 cut(s) 197, 952
MlsI TGGCCA 1 cut(s) 1265
MluI ACGCGT 1 cut(s) 758
MluNI TGGCCA 1 cut(s) 1265
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 9 cut(s) 64, 75, 98, 358, 712, 825, 985, 1076, 1276
Mox20I TGGCCA 1 cut(s) 1265
Mph1103I ATGCAT 1 cut(s) 1303
MroXI GAANNNNTTC 1 cut(s) 27
MscI TGGCCA 1 cut(s) 1265
MseI TTAA 4 cut(s) 371, 525, 720, 999
MslI CAYNNNNRTG 1 cut(s) 841
Msp20I TGGCCA 1 cut(s) 1265
MspA1I CMGCKG 4 cut(s) 389, 584, 1107, 1316
MspCI CTTAAG 1 cut(s) 719
MspR9I CCNGG 1 cut(s) 437
MunI CAATTG 1 cut(s) 1199
MvaI CCWGG 1 cut(s) 437
MvnI CGCG 1 cut(s) 760
MwoI GCNNNNNNNGC 5 cut(s) 395, 581, 737, 803, 1110
NdeI CATATG 1 cut(s) 1297
NlaIII CATG 4 cut(s) 299, 865, 1072, 1161
NlaIV GGNNCC 3 cut(s) 553, 579, 1064
NmuCI GTSAC 1 cut(s) 676
NsiI ATGCAT 1 cut(s) 1303
NspI RCATGY 1 cut(s) 865
NspV TTCGAA 1 cut(s) 450
PagI TCATGA 1 cut(s) 1068
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 1 cut(s) 1055
PflMI CCANNNNNTGG 2 cut(s) 184, 964
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
PshAI GACNNNNGTC 1 cut(s) 1038
PshBI ATTAAT 1 cut(s) 525
Psp6I CCWGG 1 cut(s) 435
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 3 cut(s) 553, 579, 1064
PstI CTGCAG 1 cut(s) 541
PstNI CAGNNNCTG 2 cut(s) 827, 1107
PsuI RGATCY 2 cut(s) 197, 952
PvuII CAGCTG 4 cut(s) 389, 584, 1107, 1316
RsaI GTAC 2 cut(s) 920, 1174
RsaNI GTAC 2 cut(s) 919, 1173
RseI CAYNNNNRTG 1 cut(s) 841
SaqAI TTAA 4 cut(s) 371, 525, 720, 999
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 1 cut(s) 437
SfaNI GCATC 7 cut(s) 407, 490, 703, 815, 935, 1198, 1310
SfcI CTRYAG 2 cut(s) 537, 585
SfuI TTCGAA 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 841
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
SpeI ACTAGT 1 cut(s) 430
SsiI CCGC 4 cut(s) 575, 620, 865, 1028
SspI AATATT 1 cut(s) 169
SspMI CTAG 3 cut(s) 431, 561, 623
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 3 cut(s) 152, 329, 745
TaiI ACGT 1 cut(s) 1038
TaqI TCGA 2 cut(s) 278, 450
TaqII GACCGA 1 cut(s) 664
TfiI GAWTC 1 cut(s) 1055
Tru1I TTAA 4 cut(s) 371, 525, 720, 999
Tru9I TTAA 4 cut(s) 371, 525, 720, 999
TscAI CASTG 3 cut(s) 562, 742, 906
TseFI GTSAC 1 cut(s) 676
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 2 cut(s) 511, 1143
TspGWI ACGGA 1 cut(s) 1160
TspRI CASTG 3 cut(s) 562, 742, 906
Van91I CCANNNNNTGG 2 cut(s) 184, 964
Vha464I CTTAAG 1 cut(s) 719
VspI ATTAAT 1 cut(s) 525
XapI RAATTY 8 cut(s) 116, 260, 518, 590, 656, 907, 974, 995
XceI RCATGY 1 cut(s) 865
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 431, 561, 623
Zsp2I ATGCAT 1 cut(s) 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.