FvH4_3g17000

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000200
Physical Location & Seq
Reverse (-)
10736971 .. 10738230
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17000.t1

Sequence Viewer

Length: 1128 bp
ATGAAAGAGAGGTCGTGGAGCTACAAGATGAGCTTAGAGGTCAAGGTTGAAGTTTTTCACAAAGAAAGAATTACACCTTCCTCTTCAACTCCTCACCACCTTAGAAATTTCAGCATCTCAATTTTAGATCAGTTTTCTCCTTCAATTCATTTCCCTCTCATTCTGTTCTATCCCAACGATAGTGATACTCATGAGGTCAATCATATCGATCGCCCATGTTTGGTTGTTGAAAGAACCAAGCTTCTGAAAAGATCACTATCTGAAACCCTAACTCGCTTCTACCCCTTTGCGGGAAGAATCCAGGATCATGCTTCAGTCTGTTGCAATGACGAGGGAGCTATGTTTCTTGAAGCTCGGGTCAACTGTCCCATATCAAAGGCATTGGACAAACCCGATCTTGATTTTGAAAAAGAGTTGATTCCTAATTTACAATATGCTGAAGGAGACTCCGGCCAGGATATTCTACTAGTCCAGGCCAACTTCTTTGAATGTGGCGGGGTAGCAATCGGATTCCAGTTCAAACATCTACCGTTTCTGAAGATTGCTAATGAAAGGTGTACAACAAGGAGATTCTTGTTTGAATCCTCGAAGATTGAGTCACTGAAGTCCAAAGCTGCCAGTGCTGCGGTGCAAAATCCCACGCGGGTAGAGGTCGTGTCAGCGCTTATTTGGAACTGTGCGATGAAAGCATCAACCGCATACTCACGTTCTGCAAGACCATCATCATCGGCATGGTTGCAAACTGTGAACATGCGGAAAATATTGGCGCAACCATCACCGGACAACTTGATGGGGAACCTTTTGGGGTTCTTTCCAGCAATATCTATGAAAGGGGAAAGTGAGGATGGTCTTCAAGGCTTGGTTGCTGCAATGAGGAAAGGGACAAATGAACTGAAGGTGAAGTATGGTGCTAATGGTATAGGTGTGGACGATATAAGTAGACTCCTGAAAGAGTATGGAGAGCTGTTGCAAAAGGGTGATAGAGAGTGCTATTGTTCCACCAGTTGGTGTCGGTTGCCTATTTATGAAACTGATTTTGGATGGGGAAAGCCATTGGTGAATAGTCCTGCAATGGTAGAAATCAAGAATTTGACTACCTTGATGGATACCAGTGATGGCGTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

376

Amino Acids

42.01

Weight (kDa)

7.06

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 15 - 175 6.9e-33 Transferase family
Transferase PF02458 184 - 371 1.2e-27 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1005
AccI GTMKAC 1 cut(s) 940
AccII CGCG 1 cut(s) 643
AciI CCGC 6 cut(s) 290, 495, 626, 643, 696, 754
AclWI GGATC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 2 cut(s) 106, 1087
AcuI CTGAAG 5 cut(s) 297, 459, 557, 623, 914
AfaI GTAC 1 cut(s) 559
AfeI AGCGCT 1 cut(s) 663
AfiI CCNNNNNNNGG 4 cut(s) 220, 289, 290, 1005
AhlI ACTAGT 1 cut(s) 466
AjnI CCWGG 3 cut(s) 300, 453, 471
AjuI GAANNNNNNNTTGG 2 cut(s) 1020, 1052
AluBI AGCT 7 cut(s) 21, 33, 241, 338, 353, 614, 964
AluI AGCT 7 cut(s) 21, 33, 241, 338, 353, 614, 964
Alw26I GTCTC 1 cut(s) 438
AlwI GGATC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 354
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 2 cut(s) 451, 474
ApeKI GCWGC 3 cut(s) 614, 623, 866
ApoI RAATTY 2 cut(s) 106, 1087
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 2 cut(s) 664, 769
AsuHPI GGTGA 5 cut(s) 86, 768, 910, 989, 1069
AvaI CYCGRG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 842
BbvI GCAGC 3 cut(s) 601, 610, 853
BccI CCATC 7 cut(s) 727, 781, 784, 839, 1035, 1096, 1109
BciT130I CCWGG 3 cut(s) 302, 455, 473
BciVI GTATCC 1 cut(s) 1099
BcoDI GTCTC 1 cut(s) 438
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 1 cut(s) 467
BfoI RGCGCY 1 cut(s) 665
BfuI GTATCC 1 cut(s) 1099
BisI GCNGC 3 cut(s) 615, 624, 867
BlsI GCNGC 3 cut(s) 616, 625, 868
Bme1390I CCNGG 3 cut(s) 302, 455, 473
BmeT110I CYCGRG 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 797
BmrFI CCNGG 3 cut(s) 302, 455, 473
BmsI GCATC 2 cut(s) 123, 698
BpiI GAAGAC 1 cut(s) 842
Bsa29I ATCGAT 1 cut(s) 207
BsaBI GATNNNNATC 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 778
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 289, 290, 1005
Bse1I ACTGG 4 cut(s) 514, 618, 1002, 1110
Bse3DI GCAATG 3 cut(s) 331, 876, 1077
Bse8I GATNNNNATC 1 cut(s) 256
BseBI CCWGG 3 cut(s) 302, 455, 473
BseCI ATCGAT 1 cut(s) 207
BseGI GGATG 2 cut(s) 850, 1046
BseJI GATNNNNATC 1 cut(s) 256
BseLI CCNNNNNNNGG 4 cut(s) 220, 289, 290, 1005
BseMI GCAATG 3 cut(s) 331, 876, 1077
BseNI ACTGG 4 cut(s) 514, 618, 1002, 1110
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 601, 610, 853
Bsh1236I CGCG 1 cut(s) 643
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 453, 476
BshVI ATCGAT 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 2 cut(s) 450, 779
BslFI GGGAC 2 cut(s) 351, 895
BslI CCNNNNNNNGG 4 cut(s) 220, 289, 290, 1005
BsmAI GTCTC 1 cut(s) 438
BsmFI GGGAC 2 cut(s) 351, 895
BsnI GGCC 2 cut(s) 453, 476
BsoBI CYCGRG 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 557
Bsp143I GATC 5 cut(s) 127, 208, 251, 304, 394
BspACI CCGC 6 cut(s) 290, 495, 626, 643, 696, 754
BspANI GGCC 2 cut(s) 453, 476
BspDI ATCGAT 1 cut(s) 207
BspFNI CGCG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 797
BspPI GGATC 1 cut(s) 312
BsrDI GCAATG 3 cut(s) 331, 876, 1077
BsrGI TGTACA 1 cut(s) 557
BsrI ACTGG 4 cut(s) 514, 618, 1002, 1110
BssMI GATC 5 cut(s) 127, 208, 251, 304, 394
Bst2UI CCWGG 3 cut(s) 302, 455, 473
Bst4CI ACNGT 4 cut(s) 365, 531, 677, 745
Bst6I CTCTTC 1 cut(s) 88
BstAUI TGTACA 1 cut(s) 557
BstDEI CTNAG 2 cut(s) 34, 101
BstF5I GGATG 2 cut(s) 850, 1046
BstFNI CGCG 1 cut(s) 643
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 2 cut(s) 664, 769
BstKTI GATC 5 cut(s) 130, 211, 254, 307, 397
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 5 cut(s) 127, 208, 251, 304, 394
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 4 cut(s) 620, 623, 686, 695
BstNI CCWGG 3 cut(s) 302, 455, 473
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 3 cut(s) 300, 453, 471
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 3 cut(s) 601, 610, 853
BstV2I GAAGAC 1 cut(s) 842
Bsu15I ATCGAT 1 cut(s) 207
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 2 cut(s) 453, 476
BsuTUI ATCGAT 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 695
BtsCI GGATG 2 cut(s) 850, 1046
BtsIMutI CAGTG 3 cut(s) 599, 625, 1117
CciI TCATGA 1 cut(s) 190
CfoI GCGC 2 cut(s) 664, 769
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 1 cut(s) 558
CviAII CATG 5 cut(s) 191, 216, 308, 732, 751
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 2 cut(s) 34, 101
DpnI GATC 5 cut(s) 129, 210, 253, 306, 396
DpnII GATC 5 cut(s) 127, 208, 251, 304, 394
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco47III AGCGCT 1 cut(s) 663
Eco57I CTGAAG 5 cut(s) 297, 459, 557, 623, 914
Eco88I CYCGRG 1 cut(s) 354
EcoRII CCWGG 3 cut(s) 300, 453, 471
FaeI CATG 5 cut(s) 194, 219, 311, 735, 754
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 2 cut(s) 351, 895
FatI CATG 5 cut(s) 190, 215, 307, 731, 750
FauI CCCGC 3 cut(s) 283, 488, 636
FblI GTMKAC 1 cut(s) 940
Fnu4HI GCNGC 3 cut(s) 615, 624, 867
FokI GGATG 2 cut(s) 857, 1053
Fsp4HI GCNGC 3 cut(s) 615, 624, 867
FspBI CTAG 1 cut(s) 467
GlaI GCGC 2 cut(s) 663, 768
GluI GCNGC 3 cut(s) 615, 624, 867
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 2 cut(s) 453, 476
HapII CCGG 2 cut(s) 450, 779
HhaI GCGC 2 cut(s) 664, 769
Hin1II CATG 5 cut(s) 194, 219, 311, 735, 754
Hin6I GCGC 2 cut(s) 662, 767
HinP1I GCGC 2 cut(s) 662, 767
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 8 cut(s) 297, 418, 446, 510, 570, 581, 596, 942
HpaII CCGG 2 cut(s) 450, 779
HphI GGTGA 5 cut(s) 86, 768, 910, 989, 1069
Hpy166II GTNNAC 5 cut(s) 361, 558, 748, 928, 941
Hpy188I TCNGA 4 cut(s) 246, 262, 509, 537
Hpy188III TCNNGA 5 cut(s) 191, 347, 398, 946, 1084
Hpy8I GTNNAC 5 cut(s) 361, 558, 748, 928, 941
HpyAV CCTTC 4 cut(s) 87, 150, 434, 889
HpyCH4III ACNGT 4 cut(s) 365, 531, 677, 745
HpyCH4IV ACGT 1 cut(s) 706
HpyCH4V TGCA 7 cut(s) 324, 631, 713, 739, 869, 970, 1070
HpyF10VI GCNNNNNNNGC 4 cut(s) 620, 623, 686, 695
HpyF3I CTNAG 2 cut(s) 34, 101
HpySE526I ACGT 1 cut(s) 706
Hsp92II CATG 5 cut(s) 194, 219, 311, 735, 754
HspAI GCGC 2 cut(s) 662, 767
Kzo9I GATC 5 cut(s) 127, 208, 251, 304, 394
LmnI GCTCC 2 cut(s) 18, 335
Lsp1109I GCAGC 3 cut(s) 601, 610, 853
LweI GCATC 2 cut(s) 123, 698
MaeI CTAG 1 cut(s) 467
MaeII ACGT 1 cut(s) 706
MaeIII GTNAC 1 cut(s) 597
MalI GATC 5 cut(s) 129, 210, 253, 306, 396
MboI GATC 5 cut(s) 127, 208, 251, 304, 394
MboII GAAGA 5 cut(s) 75, 306, 550, 601, 842
MluCI AATT 6 cut(s) 69, 106, 120, 144, 424, 1087
MlyI GAGTC 3 cut(s) 440, 605, 936
MroXI GAANNNNTTC 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 730
MspI CCGG 2 cut(s) 450, 779
MspR9I CCNGG 3 cut(s) 302, 455, 473
MvaI CCWGG 3 cut(s) 302, 455, 473
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 4 cut(s) 620, 623, 686, 695
NdeII GATC 5 cut(s) 127, 208, 251, 304, 394
NlaIII CATG 5 cut(s) 194, 219, 311, 735, 754
NlaIV GGNNCC 1 cut(s) 797
NmuCI GTSAC 1 cut(s) 597
NspI RCATGY 1 cut(s) 754
PagI TCATGA 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 5 cut(s) 297, 418, 510, 570, 581
PflMI CCANNNNNTGG 1 cut(s) 1005
PfoI TCCNGGA 1 cut(s) 300
PkrI GCNGC 3 cut(s) 616, 625, 868
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 3 cut(s) 440, 604, 936
PpsI GAGTC 3 cut(s) 440, 604, 936
Psp6I CCWGG 3 cut(s) 300, 453, 471
PspGI CCWGG 3 cut(s) 300, 453, 471
PspN4I GGNNCC 1 cut(s) 797
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 730
SatI GCNGC 3 cut(s) 615, 624, 867
Sau3AI GATC 5 cut(s) 127, 208, 251, 304, 394
SchI GAGTC 3 cut(s) 440, 605, 936
ScrFI CCNGG 3 cut(s) 302, 455, 473
SfaNI GCATC 2 cut(s) 123, 698
SmiMI CAYNNNNRTG 1 cut(s) 730
SpeI ACTAGT 1 cut(s) 466
Sse9I AATT 6 cut(s) 69, 106, 120, 144, 424, 1087
SsiI CCGC 6 cut(s) 290, 495, 626, 643, 696, 754
SspI AATATT 1 cut(s) 762
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 3 cut(s) 300, 453, 471
TaaI ACNGT 4 cut(s) 365, 531, 677, 745
TaiI ACGT 1 cut(s) 709
TaqI TCGA 2 cut(s) 207, 587
TasI AATT 6 cut(s) 69, 106, 120, 144, 424, 1087
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 5 cut(s) 297, 418, 510, 570, 581
TscAI CASTG 3 cut(s) 606, 625, 1117
TseFI GTSAC 1 cut(s) 597
TseI GCWGC 3 cut(s) 614, 623, 866
Tsp45I GTSAC 1 cut(s) 597
TspDTI ATGAA 7 cut(s) 17, 137, 564, 698, 842, 903, 1041
TspRI CASTG 3 cut(s) 606, 625, 1117
Van91I CCANNNNNTGG 1 cut(s) 1005
XapI RAATTY 2 cut(s) 106, 1087
XceI RCATGY 1 cut(s) 754
XcmI CCANNNNNNNNNTGG 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 940
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.