RchiOBHm_Chr5g0026651

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000200
Physical Location & Seq
Forward (+)
20717917 .. 20718489
573 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30623

Sequence Viewer

Length: 573 bp
ATGGGTTCTGAAATGACTGAAATCCAGGTTGAAGTGATTCACAAGGAAACAATTACACCAGCATCTCCAACTCCTCGCAACCTTACGACTTGCAACCTCTCTGTTTTTGATCAATTCATATCTGACGTCTATGTCCGGCTACTTCTCGTCTATCCCAGCAGTGATGTCGCTCACCGCCATGCTTTGTTCACTGATAGATCCAAGCTTCGGAAAACATCATTGTCTGAAGCCCTCAGTCGCTTCTATCCCTATGCAGGCAGAACATTGATCAAGAACAACATTGTTTCAATCTGTTGCAATGAGCAGGGGGCTGCCTTTATCGAAGCTCAAGTGAACTGTCCCATATCCAAGGTTTTGGAAAAGCCTGATCTTGGGTTGCTGAAACAGTTGCTTCCAACTGCCACGGAATCAACACAAGAAAGCACAGCAGGGTATCTTCTACTAGTCCAGGCCAACTTCTTTGAATGCGGAGGAGTTGCGATTGGGGTAGCATTTCACACAAGGCTGCAGATGCCTCTACACTCGGCACGTTCATCAGTAGCTGGGCTGCAGTGGCCCTTGGTGCAGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

190

Amino Acids

20.99

Weight (kDa)

7.67

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 9 - 165 3.7e-31 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 1 cut(s) 129
AciI CCGC 2 cut(s) 175, 468
AclWI GGATC 1 cut(s) 192
AcuI CTGAAG 1 cut(s) 246
AcyI GRCGYC 1 cut(s) 126
AfiI CCNNNNNNNGG 3 cut(s) 207, 254, 371
AgsI TTSAA 3 cut(s) 32, 288, 464
AhlI ACTAGT 1 cut(s) 442
AjnI CCWGG 2 cut(s) 24, 447
AluBI AGCT 3 cut(s) 205, 326, 542
AluI AGCT 3 cut(s) 205, 326, 542
AlwI GGATC 1 cut(s) 192
AlwNI CAGNNNCTG 1 cut(s) 542
AoxI GGCC 2 cut(s) 450, 554
ApeKI GCWGC 3 cut(s) 311, 505, 547
Asp700I GAANNNNTTC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 555
AsuHPI GGTGA 1 cut(s) 164
BbvI GCAGC 3 cut(s) 298, 492, 534
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BciT130I CCWGG 2 cut(s) 26, 449
BclI TGATCA 2 cut(s) 109, 267
BcuI ACTAGT 1 cut(s) 442
BfaI CTAG 1 cut(s) 443
BfmI CTRYAG 2 cut(s) 506, 548
BisI GCNGC 3 cut(s) 312, 506, 548
BlsI GCNGC 3 cut(s) 313, 507, 549
Bme1390I CCNGG 2 cut(s) 26, 449
BmgT120I GGNCC 1 cut(s) 555
BmrFI CCNGG 2 cut(s) 26, 449
BmsI GCATC 2 cut(s) 71, 501
BpuEI CTTGAG 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 348, 402, 558
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 254, 371
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 26, 449
BseDI CCNNGG 3 cut(s) 348, 402, 558
BseLI CCNNNNNNNGG 3 cut(s) 207, 254, 371
BseMI GCAATG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 63, 486
BseXI GCAGC 3 cut(s) 298, 492, 534
BseYI CCCAGC 2 cut(s) 155, 542
BshFI GGCC 2 cut(s) 452, 556
BsiSI CCGG 1 cut(s) 136
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 207, 254, 371
BsmFI GGGAC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 2 cut(s) 452, 556
Bsp143I GATC 4 cut(s) 109, 197, 267, 367
BspACI CCGC 2 cut(s) 175, 468
BspANI GGCC 2 cut(s) 452, 556
BspCNI CTCAG 1 cut(s) 246
BspMAI CTGCAG 2 cut(s) 510, 552
BspPI GGATC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 348, 402, 558
BssMI GATC 4 cut(s) 109, 197, 267, 367
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 2 cut(s) 348, 558
Bst2UI CCWGG 2 cut(s) 26, 449
Bst4CI ACNGT 2 cut(s) 338, 387
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 233
BstDSI CCRYGG 1 cut(s) 402
BstKTI GATC 4 cut(s) 112, 200, 270, 370
BstMBI GATC 4 cut(s) 109, 197, 267, 367
BstMWI GCNNNNNNNGC 3 cut(s) 511, 553, 562
BstNI CCWGG 2 cut(s) 26, 449
BstSCI CCNGG 2 cut(s) 24, 447
BstSFI CTRYAG 2 cut(s) 506, 548
BstV1I GCAGC 3 cut(s) 298, 492, 534
BstX2I RGATCY 1 cut(s) 197
BstXI CCANNNNNNTGG 1 cut(s) 355
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 452, 556
BtgI CCRYGG 1 cut(s) 402
BtsI GCAGTG 2 cut(s) 166, 557
BtsIMutI CAGTG 3 cut(s) 166, 189, 557
Cac8I GCNNGC 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 555
CviAII CATG 1 cut(s) 179
DdeI CTNAG 1 cut(s) 233
DpnI GATC 4 cut(s) 111, 199, 269, 369
DpnII GATC 4 cut(s) 109, 197, 267, 367
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 348, 558
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 2 cut(s) 24, 447
EcoT14I CCWWGG 2 cut(s) 348, 558
ErhI CCWWGG 2 cut(s) 348, 558
FaeI CATG 1 cut(s) 182
FaiI YATR 5 cut(s) 119, 132, 180, 252, 344
FaqI GGGAC 1 cut(s) 324
FatI CATG 1 cut(s) 178
FbaI TGATCA 2 cut(s) 109, 267
Fnu4HI GCNGC 3 cut(s) 312, 506, 548
Fsp4HI GCNGC 3 cut(s) 312, 506, 548
FspBI CTAG 1 cut(s) 443
GluI GCNGC 3 cut(s) 312, 506, 548
GsaI CCCAGC 2 cut(s) 159, 546
HaeIII GGCC 2 cut(s) 452, 556
HapII CCGG 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 182
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 37, 407
HpaII CCGG 1 cut(s) 136
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 189, 334
Hpy188I TCNGA 4 cut(s) 10, 124, 210, 226
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 2 cut(s) 189, 334
HpyCH4III ACNGT 2 cut(s) 338, 387
HpyCH4IV ACGT 2 cut(s) 126, 529
HpyCH4V TGCA 6 cut(s) 93, 254, 297, 508, 550, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 511, 553, 562
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 126, 529
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 182
Ksp22I TGATCA 2 cut(s) 109, 267
Kzo9I GATC 4 cut(s) 109, 197, 267, 367
Lsp1109I GCAGC 3 cut(s) 298, 492, 534
LweI GCATC 2 cut(s) 71, 501
MaeI CTAG 1 cut(s) 443
MaeII ACGT 2 cut(s) 126, 529
MalI GATC 4 cut(s) 111, 199, 269, 369
MboI GATC 4 cut(s) 109, 197, 267, 367
MboII GAAGA 1 cut(s) 428
MflI RGATCY 1 cut(s) 197
MluCI AATT 2 cut(s) 51, 113
MmeI TCCRAC 2 cut(s) 92, 419
MnlI CCTC 6 cut(s) 84, 107, 242, 464, 525, 561
MroXI GAANNNNTTC 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 177
MspI CCGG 1 cut(s) 136
MspR9I CCNGG 2 cut(s) 26, 449
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 2 cut(s) 26, 449
MwoI GCNNNNNNNGC 3 cut(s) 511, 553, 562
NdeII GATC 4 cut(s) 109, 197, 267, 367
NlaIII CATG 1 cut(s) 182
NmeAIII GCCGAG 1 cut(s) 503
PctI GAATGC 1 cut(s) 470
PdmI GAANNNNTTC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 37, 407
PkrI GCNGC 3 cut(s) 313, 507, 549
Psp6I CCWGG 2 cut(s) 24, 447
PspFI CCCAGC 2 cut(s) 155, 542
PspGI CCWGG 2 cut(s) 24, 447
PspPI GGNCC 1 cut(s) 555
PstI CTGCAG 2 cut(s) 510, 552
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 177
SatI GCNGC 3 cut(s) 312, 506, 548
Sau3AI GATC 4 cut(s) 109, 197, 267, 367
Sau96I GGNCC 1 cut(s) 555
ScrFI CCNGG 2 cut(s) 26, 449
SfaNI GCATC 2 cut(s) 71, 501
SfcI CTRYAG 2 cut(s) 506, 548
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
SpeI ACTAGT 1 cut(s) 442
Sse9I AATT 2 cut(s) 51, 113
SsiI CCGC 2 cut(s) 175, 468
SspMI CTAG 1 cut(s) 443
StyD4I CCNGG 2 cut(s) 24, 447
StyI CCWWGG 2 cut(s) 348, 558
TaaI ACNGT 2 cut(s) 338, 387
TaiI ACGT 2 cut(s) 129, 532
TaqI TCGA 1 cut(s) 321
TasI AATT 2 cut(s) 51, 113
TfiI GAWTC 2 cut(s) 37, 407
TscAI CASTG 3 cut(s) 166, 196, 557
TseI GCWGC 3 cut(s) 311, 505, 547
TspDTI ATGAA 2 cut(s) 106, 522
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 3 cut(s) 166, 196, 557
XmnI GAANNNNTTC 1 cut(s) 36
XspI CTAG 1 cut(s) 443
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.