FvH4_3g15910

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000200
Physical Location & Seq
Forward (+)
10022261 .. 10023912
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15910.t1

Sequence Viewer

Length: 1323 bp
ATGTCTGCACAGATGAAGATTGAAATCATTGAGAGGCAGATAATTAAGCCATCCTCCCCAACTCCTCATCACCTTAGAAATTTTGAGCTTTCATTTTTCGATCAGATGGCAATTACCATTTACACTCCACTCCTTCTCTTCTTTCCAAATACTGAATCTACTAGTAAGCTTGAAATATGTGAGCATCTGACAGAATCATTAGCTAAAACTCTCACTCACTTCTACCCTTTAGCAGGAAGAATTAAAGGTAGTACAGTTGTCGAATGTAACGATGATGGAGCTGAATTTGTCAAAGCGCAAGTCAGCTGTTCCTTATCCGATTTTCTCGAAAATCCGGCAGTCAAGATATTAGAACAGTTCCTTCCTGCTGAAATCTTATCCAAGGAGGCAGGGAGTGGTCCTTTACTTCTTGTGCAAGTCAGCTTGTTTGAGTGTGGTGGGATGGCACTTGGTTTCAGTATTTCACATAAAATTGCTGATGCCTCCACACTGTCCACATTTATCAATTGCTGGGCTCAAACAACAAATACATCCATCACTGATAGTGAGGTAACACTTCCGGAATTTGGTTCAGCATCTCTTTTTCCTCCACTAGAGAAATCTAGTGACTCCTCACAGCCACCAGCCCGAGTATACTCCAAAAATCATATCAATATAACAAGGAGGTTTGTGTTTGATGGCGCAAACATTTCTGCTCTACAATCTAAAGTAGCTAGTCCATCTGTGCCAAAACCTACACGTGTAGAAGCGATTTCAGCACTCATTTGGAAATGTGCAATCGAAGCGTCCACATCAAAATCAGGATCTCAAAGGCCATCAGTGTTTAGCCAAGATGTGAACTTGCGTAAAAGAGTTGTGCCGCCCTTGCCTGAAAATTGTGCTGGGAATGTTGTAGGTTTTTTTAGATCAAAGGTTGAAGTTGAAGACGGTACTAGTGTGGCCATAGATCTAAAAGACTTGGTTTCCAAATTCAGGGAAGGGATTGAAAATTATGCTGCTATAACAGAAACCATATTTGGTTCTGATGAAGCATGGCAAGGGATCAAAGATAAGTACAAGAACCTGAAAAAAAGTGATGCCATGGGGTTCTATAGCTGCACAAGTTGGTGTAGGTTTCCGTTTTATGAAGCAGATTTTGGATGGGGAAAGCCAAACTGGGTGAGCATTGCTAGCGTTTCAATTGAAAATATAATTGTTATGTTGGATAAAAGAGATGGGAATGGAATAGAAGTATGGTTGACTATGAACCATGAAACCATGGCCTTATTTGAGAGCAATGCAGAGCTGCTTGCATATGCTTCTGTAAATCCAAGCGTCACCTAG

Protein Analysis

441

Amino Acids

48.46

Weight (kDa)

5.36

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 429 5.3e-97 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 633
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 1 cut(s) 860
AclWI GGATC 2 cut(s) 811, 1049
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 4 cut(s) 79, 284, 563, 968
AcvI CACGTG 1 cut(s) 740
AfaI GTAC 3 cut(s) 253, 931, 1055
AfiI CCNNNNNNNGG 3 cut(s) 233, 566, 972
AflIII ACRYGT 2 cut(s) 737, 739
AgsI TTSAA 7 cut(s) 23, 173, 917, 923, 986, 1179, 1184
AhlI ACTAGT 2 cut(s) 161, 932
AjuI GAANNNNNNNTTGG 4 cut(s) 999, 1031, 1119, 1151
AluBI AGCT 9 cut(s) 88, 169, 203, 281, 306, 423, 713, 1095, 1285
AluI AGCT 9 cut(s) 88, 169, 203, 281, 306, 423, 713, 1095, 1285
AlwI GGATC 2 cut(s) 811, 1049
Ama87I CYCGRG 1 cut(s) 627
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 3 cut(s) 812, 939, 1260
ApeKI GCWGC 3 cut(s) 995, 1095, 1285
ApoI RAATTY 4 cut(s) 79, 284, 563, 968
ArsI GACNNNNNNTTYG 2 cut(s) 285, 317
AspLEI GCGC 2 cut(s) 298, 683
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 3 cut(s) 62, 1171, 1309
AsuNHI GCTAGC 1 cut(s) 1169
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 1 cut(s) 398
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BalI TGGCCA 1 cut(s) 941
BanII GRGCYC 1 cut(s) 517
BbrPI CACGTG 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 930
BbvI GCAGC 3 cut(s) 982, 1082, 1272
BcuI ACTAGT 2 cut(s) 161, 932
BfaI CTAG 7 cut(s) 162, 593, 603, 714, 933, 1170, 1321
BfmI CTRYAG 1 cut(s) 1090
BglII AGATCT 1 cut(s) 946
BisI GCNGC 4 cut(s) 860, 996, 1096, 1286
BlsI GCNGC 4 cut(s) 861, 997, 1097, 1287
Bme18I GGWCC 1 cut(s) 398
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 1 cut(s) 398
BmrI ACTGGG 1 cut(s) 1165
BmsI GCATC 4 cut(s) 193, 469, 584, 1066
BmtI GCTAGC 1 cut(s) 1173
BmuI ACTGGG 1 cut(s) 1165
BpiI GAAGAC 1 cut(s) 930
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 3 cut(s) 381, 1080, 1257
BsaWI WCCGGW 1 cut(s) 559
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 566, 972
Bse1I ACTGG 1 cut(s) 1160
Bse3DI GCAATG 2 cut(s) 1164, 1282
Bse8I GATNNNNATC 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 559
BseDI CCNNGG 3 cut(s) 381, 1080, 1257
BseGI GGATG 4 cut(s) 50, 447, 530, 1145
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 3 cut(s) 233, 566, 972
BseMI GCAATG 2 cut(s) 1164, 1282
BseNI ACTGG 1 cut(s) 1160
BseRI GAGGAG 2 cut(s) 54, 601
BseXI GCAGC 3 cut(s) 982, 1082, 1272
BseYI CCCAGC 2 cut(s) 510, 881
BsgI GTGCAG 1 cut(s) 1081
BshFI GGCC 3 cut(s) 814, 941, 1262
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 2 cut(s) 335, 560
BslI CCNNNNNNNGG 3 cut(s) 233, 566, 972
BsnI GGCC 3 cut(s) 814, 941, 1262
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 1 cut(s) 517
Bsp13I TCCGGA 1 cut(s) 559
Bsp143I GATC 5 cut(s) 100, 803, 905, 946, 1041
Bsp19I CCATGG 2 cut(s) 1080, 1257
BspACI CCGC 1 cut(s) 860
BspANI GGCC 3 cut(s) 814, 941, 1262
BspEI TCCGGA 1 cut(s) 559
BspOI GCTAGC 1 cut(s) 1173
BspPI GGATC 2 cut(s) 811, 1049
BsrDI GCAATG 2 cut(s) 1164, 1282
BsrI ACTGG 1 cut(s) 1160
BssECI CCNNGG 3 cut(s) 381, 1080, 1257
BssMI GATC 5 cut(s) 100, 803, 905, 946, 1041
BssNAI GTATAC 1 cut(s) 634
BssT1I CCWWGG 3 cut(s) 381, 1080, 1257
Bst1107I GTATAC 1 cut(s) 634
Bst4CI ACNGT 4 cut(s) 256, 357, 492, 929
Bst6I CTCTTC 1 cut(s) 143
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 2 cut(s) 1171, 1290
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 2 cut(s) 1080, 1257
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 4 cut(s) 50, 447, 530, 1145
BstHHI GCGC 2 cut(s) 298, 683
BstKTI GATC 5 cut(s) 103, 806, 908, 949, 1044
BstMBI GATC 5 cut(s) 100, 803, 905, 946, 1041
BstMWI GCNNNNNNNGC 4 cut(s) 755, 782, 865, 1170
BstSFI CTRYAG 1 cut(s) 1090
BstV1I GCAGC 3 cut(s) 982, 1082, 1272
BstV2I GAAGAC 1 cut(s) 930
BstX2I RGATCY 2 cut(s) 803, 946
BstYI RGATCY 2 cut(s) 803, 946
BstZ17I GTATAC 1 cut(s) 634
BsuRI GGCC 3 cut(s) 814, 941, 1262
BtgI CCRYGG 2 cut(s) 1080, 1257
BtsCI GGATG 4 cut(s) 50, 447, 530, 1145
BtsIMutI CAGTG 3 cut(s) 488, 537, 825
Cac8I GCNNGC 2 cut(s) 1171, 1290
CfoI GCGC 2 cut(s) 298, 683
Cfr13I GGNCC 1 cut(s) 398
CseI GACGC 2 cut(s) 774, 1303
Csp6I GTAC 3 cut(s) 252, 930, 1054
CviAII CATG 4 cut(s) 1032, 1081, 1250, 1258
CviQI GTAC 3 cut(s) 252, 930, 1054
DdeI CTNAG 1 cut(s) 74
DpnI GATC 5 cut(s) 102, 805, 907, 948, 1043
DpnII GATC 5 cut(s) 100, 803, 905, 946, 1041
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 3 cut(s) 381, 1080, 1257
Eco24I GRGCYC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 398
Eco72I CACGTG 1 cut(s) 740
Eco88I CYCGRG 1 cut(s) 627
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoT14I CCWWGG 3 cut(s) 381, 1080, 1257
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 3 cut(s) 381, 1080, 1257
FaeI CATG 4 cut(s) 1035, 1084, 1253, 1261
FatI CATG 4 cut(s) 1031, 1080, 1249, 1257
FauNDI CATATG 1 cut(s) 1294
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 4 cut(s) 860, 996, 1096, 1286
FokI GGATG 4 cut(s) 37, 454, 517, 1152
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 4 cut(s) 860, 996, 1096, 1286
FspBI CTAG 7 cut(s) 162, 593, 603, 714, 933, 1170, 1321
GlaI GCGC 2 cut(s) 297, 682
GluI GCNGC 4 cut(s) 860, 996, 1096, 1286
GsaI CCCAGC 2 cut(s) 514, 885
HaeIII GGCC 3 cut(s) 814, 941, 1262
HapII CCGG 2 cut(s) 335, 560
HgaI GACGC 2 cut(s) 774, 1303
HhaI GCGC 2 cut(s) 298, 683
Hin1II CATG 4 cut(s) 1035, 1084, 1253, 1261
Hin6I GCGC 2 cut(s) 296, 681
HinP1I GCGC 2 cut(s) 296, 681
HincII GTYRAC 1 cut(s) 1239
HindII GTYRAC 1 cut(s) 1239
HindIII AAGCTT 1 cut(s) 167
HinfI GANTC 3 cut(s) 155, 194, 608
HpaII CCGG 2 cut(s) 335, 560
HphI GGTGA 3 cut(s) 62, 1171, 1309
Hpy166II GTNNAC 5 cut(s) 495, 634, 789, 838, 1239
Hpy188I TCNGA 4 cut(s) 105, 189, 319, 1024
Hpy188III TCNNGA 4 cut(s) 326, 343, 560, 801
Hpy8I GTNNAC 5 cut(s) 495, 634, 789, 838, 1239
HpyAV CCTTC 3 cut(s) 143, 371, 971
HpyCH4III ACNGT 4 cut(s) 256, 357, 492, 929
HpyCH4IV ACGT 1 cut(s) 739
HpyCH4V TGCA 6 cut(s) 8, 415, 776, 1098, 1280, 1292
HpyF10VI GCNNNNNNNGC 4 cut(s) 755, 782, 865, 1170
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 739
Hsp92II CATG 4 cut(s) 1035, 1084, 1253, 1261
HspAI GCGC 2 cut(s) 296, 681
Kpn2I TCCGGA 1 cut(s) 559
Kzo9I GATC 5 cut(s) 100, 803, 905, 946, 1041
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 3 cut(s) 982, 1082, 1272
LweI GCATC 4 cut(s) 193, 469, 584, 1066
MaeI CTAG 7 cut(s) 162, 593, 603, 714, 933, 1170, 1321
MaeII ACGT 1 cut(s) 739
MaeIII GTNAC 4 cut(s) 266, 550, 605, 1315
MalI GATC 5 cut(s) 102, 805, 907, 948, 1043
MboI GATC 5 cut(s) 100, 803, 905, 946, 1041
MboII GAAGA 4 cut(s) 28, 130, 249, 935
MfeI CAATTG 2 cut(s) 505, 1179
MflI RGATCY 2 cut(s) 803, 946
MhlI GDGCHC 1 cut(s) 517
MlsI TGGCCA 1 cut(s) 941
MluNI TGGCCA 1 cut(s) 941
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 1182
MnlI CCTC 9 cut(s) 27, 64, 75, 379, 493, 541, 597, 622, 657
Mox20I TGGCCA 1 cut(s) 941
MroI TCCGGA 1 cut(s) 559
MscI TGGCCA 1 cut(s) 941
MseI TTAA 2 cut(s) 45, 243
Msp20I TGGCCA 1 cut(s) 941
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 2 cut(s) 335, 560
MunI CAATTG 2 cut(s) 505, 1179
MwoI GCNNNNNNNGC 4 cut(s) 755, 782, 865, 1170
NcoI CCATGG 2 cut(s) 1080, 1257
NdeI CATATG 1 cut(s) 1294
NdeII GATC 5 cut(s) 100, 803, 905, 946, 1041
NheI GCTAGC 1 cut(s) 1169
NlaIII CATG 4 cut(s) 1035, 1084, 1253, 1261
NmuCI GTSAC 2 cut(s) 605, 1315
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PfeI GAWTC 2 cut(s) 155, 194
PkrI GCNGC 4 cut(s) 861, 997, 1097, 1287
PleI GAGTC 1 cut(s) 602
PmaCI CACGTG 1 cut(s) 740
PmlI CACGTG 1 cut(s) 740
PpsI GAGTC 1 cut(s) 602
Ppu21I YACGTR 1 cut(s) 740
PspCI CACGTG 1 cut(s) 740
PspFI CCCAGC 2 cut(s) 510, 881
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 2 cut(s) 803, 946
PvuII CAGCTG 1 cut(s) 306
RsaI GTAC 3 cut(s) 253, 931, 1055
RsaNI GTAC 3 cut(s) 252, 930, 1054
SaqAI TTAA 2 cut(s) 45, 243
SatI GCNGC 4 cut(s) 860, 996, 1096, 1286
Sau3AI GATC 5 cut(s) 100, 803, 905, 946, 1041
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 602
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 4 cut(s) 193, 469, 584, 1066
SfcI CTRYAG 1 cut(s) 1090
SinI GGWCC 1 cut(s) 398
SpeI ACTAGT 2 cut(s) 161, 932
SsiI CCGC 1 cut(s) 860
SspMI CTAG 7 cut(s) 162, 593, 603, 714, 933, 1170, 1321
StyI CCWWGG 3 cut(s) 381, 1080, 1257
TaaI ACNGT 4 cut(s) 256, 357, 492, 929
TaiI ACGT 1 cut(s) 742
TaqI TCGA 4 cut(s) 99, 261, 327, 780
TatI WGTACW 2 cut(s) 251, 1053
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 2 cut(s) 155, 194
Tru1I TTAA 2 cut(s) 45, 243
Tru9I TTAA 2 cut(s) 45, 243
TscAI CASTG 3 cut(s) 495, 544, 825
TseFI GTSAC 2 cut(s) 605, 1315
TseI GCWGC 3 cut(s) 995, 1095, 1285
Tsp45I GTSAC 2 cut(s) 605, 1315
TspDTI ATGAA 6 cut(s) 29, 81, 1041, 1140, 1259, 1266
TspGWI ACGGA 1 cut(s) 1107
TspRI CASTG 3 cut(s) 495, 544, 825
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 231
XapI RAATTY 4 cut(s) 79, 284, 563, 968
XmiI GTMKAC 1 cut(s) 633
XspI CTAG 7 cut(s) 162, 593, 603, 714, 933, 1170, 1321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.