Rroxscaffold_5G00359410

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000200
Physical Location & Seq
Reverse (-)
39619817 .. 39621431
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359410.1

Sequence Viewer

Length: 402 bp
ATGGACGTATCAAGATCAAACTTAGGTGTTACAAGGCCAGCAATGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGGGGCATCCCAACTTAATGGGAAATCTTTTAGGATATGTCCCAACAAAGACACAAGAAAGTGAGGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAGGTATTGAGAAATTTAAAGTGAAATATGGTAATGGAGTTAGCGGAGATGATATCTGCCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATATAAATAACTATACATGTAGCAGTTGGTGCAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCGTGGGTCACTATTCCCAGGTTTCCCAATCAAGAATCTATTTTTCTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

133

Amino Acids

15.04

Weight (kDa)

6.82

Isoelectric Point (pI)

27.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 11 - 121 8.6e-13 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 297
AciI CCGC 2 cut(s) 67, 219
AcsI RAATTY 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 290
AgsI TTSAA 2 cut(s) 152, 244
AjnI CCWGG 1 cut(s) 365
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 1 cut(s) 156
AluI AGCT 1 cut(s) 156
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 188
BbvI GCAGC 1 cut(s) 68
BccI CCATC 2 cut(s) 330, 355
BciT130I CCWGG 1 cut(s) 367
BfaI CTAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 297
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 367
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 367
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 2 cut(s) 82, 341
BseMI GCAATG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 68
BsgI GTGCAG 1 cut(s) 325
BshFI GGCC 1 cut(s) 37
BslFI GGGAC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 14
BspACI CCGC 2 cut(s) 67, 219
BspANI GGCC 1 cut(s) 37
BspMI ACCTGC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 365
BssMI GATC 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 153
BstAPI GCANNNNNTGC 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 82, 341
BstKTI GATC 1 cut(s) 17
BstMBI GATC 1 cut(s) 14
BstMWI GCNNNNNNNGC 3 cut(s) 43, 303, 312
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 2 cut(s) 67, 294
BstSCI CCNGG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 82, 341
BveI ACCTGC 1 cut(s) 297
Cac8I GCNNGC 1 cut(s) 39
CviAII CATG 3 cut(s) 64, 251, 291
CviJI RGCY 5 cut(s) 37, 156, 315, 326, 346
CviKI_1 RGCY 5 cut(s) 37, 156, 315, 326, 346
DdeI CTNAG 1 cut(s) 22
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DraI TTTAAA 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 229
EcoRII CCWGG 1 cut(s) 365
EcoRV GATATC 1 cut(s) 229
FaeI CATG 3 cut(s) 67, 254, 294
FaiI YATR 9 cut(s) 65, 114, 167, 204, 252, 278, 288, 292, 321
FaqI GGGAC 1 cut(s) 101
FatI CATG 3 cut(s) 63, 250, 290
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 69, 348
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 53
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 1 cut(s) 37
Hin1II CATG 3 cut(s) 67, 254, 294
HindIII AAGCTT 1 cut(s) 154
HinfI GANTC 1 cut(s) 383
Hpy188III TCNNGA 3 cut(s) 12, 380, 395
HpyAV CCTTC 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 306
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 303, 312
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 3 cut(s) 67, 254, 294
Kzo9I GATC 1 cut(s) 14
LpnPI CCDG 4 cut(s) 51, 292, 352, 379
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 53
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 2 cut(s) 28, 355
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 2 cut(s) 140, 266
MluCI AATT 2 cut(s) 188, 328
MnlI CCTC 1 cut(s) 133
MseI TTAA 3 cut(s) 92, 192, 260
MspR9I CCNGG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 367
MwoI GCNNNNNNNGC 3 cut(s) 43, 303, 312
NdeII GATC 1 cut(s) 14
NlaIII CATG 3 cut(s) 67, 254, 294
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 2 cut(s) 67, 294
PciI ACATGT 1 cut(s) 290
PfeI GAWTC 1 cut(s) 383
PkrI GCNGC 1 cut(s) 58
PscI ACATGT 1 cut(s) 290
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
SaqAI TTAA 3 cut(s) 92, 192, 260
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 367
SetI ASST 6 cut(s) 9, 28, 158, 181, 311, 371
SfaNI GCATC 1 cut(s) 91
Sse9I AATT 2 cut(s) 188, 328
SsiI CCGC 2 cut(s) 67, 219
SspMI CTAG 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 365
TaiI ACGT 1 cut(s) 9
TasI AATT 2 cut(s) 188, 328
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 92, 192, 260
Tru9I TTAA 3 cut(s) 92, 192, 260
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 267, 336
XapI RAATTY 1 cut(s) 188
XceI RCATGY 2 cut(s) 67, 294
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.