FvH4_3g16950

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000200
Physical Location & Seq
Forward (+)
10682992 .. 10684742
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g16950.t1

Sequence Viewer

Length: 1359 bp
ATGGGCTTAGAGGTGAAGGTTGAAGTTCTTCACAAAGAAAATATTAGTCCTTCCTCTCCAACTCCTCACCCCCTTCGATTTTTCAGCCTTTCTGTTTTCGATCAGTTAACTCCCACAGTTTATTTCCCACTACTTCTCTTCTACCCCAATACTGTTCAACCTCGCGATCGTGAGCTTAATAGTATTGATCCCCAAAGTTTGGTTGTTGAAAGAACCAAGCTTCTGAAAACATCACTCTCTGAAACCCTAACTCGCTTCTACCCCTTTGCAGGAAGAATCCACGATCATGCTTCAATCTGTTGCAATGACCAAGGAGCTGTGTTTGTTGAAGCTAAGGTCAAGTGTTCCATATCAAGGGTCTTGGAAGAACCCGATCTTGAGTTTCTAACAGAATTGATTCCTAAGTTGGAATCTACTGATGAAGGAGAAACAGGCTATGTTCTTCTAAATGTCCAGGTCAACTTCTTCGAGTGTGGTGGAATCGCTATTGGATTCAACGTTTCTCATAAGATGATTGATGCCTTCACACTCAGCACATTCGTCAATAGTTGGGCTGCAACTTCGCTTGGCTTTGGCACCAGTGATCATACAGTGTTCCCTTCACATCAATACGTTGGCGCAGCTTCTCGTTTCCCACCACTGGATCTGTTCAAGTCACCGCCACAGTTTGGAAAACTTGCTAAAGAAAAGTGTATAACAAAGAGATTCGTGTTTGAATCCTCAAAAATTGCATATCTCAAGTCTGAAGCTGCCAGTGATGCCGTGCCGAATCCCACGCGAGTCGAAGTCGTGTCAGCACTGATTTGGAAAACTGCTATGAAAGCATCAAGTGCAAACTCGGATTCTGTAAGACCATCATCAACATGGTTGCAAATTGTGAATATGCGGAACATATTGGCGCAGCCATCTGGGAAAAACTTGATGGGGAACCTTTTGGGGTTCTTTGCAGCAAGATCGACGGGAGGAGGTGAAAGCAAAGATGATCTTCAGGGCTTAGTTGCTGCGATGAGGAAGGGGTTTGAGGAATTTAAGGTGAAGTATGGTACTAAATTTGTTAGTGGGGAAGATGTAAGTAAACTCATGAATGAGTATAGGGAGCAGATGCAGAAGGATGATATAGAGTGCTATTGTTCCACCAGTTGGTGCAGGTTTCCTTTCTGTGAAGCCGATTTTGGATGGGGGAAGCCATTGATGAGTGTTCCTGCAACTGTAGAACTCAAGAATTTGATTATGCTGATGGACACCAGCGATGGAGGTGGCGTGGAAGCACGCTTGACTTTGAAAGAAGAAGACATGGCCAAATTTGAAAAGAATGAGGAGCTGCTCGCATTTGCTTCTCTAAATCCCACTGTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

453

Amino Acids

50.2

Weight (kDa)

5.57

Isoelectric Point (pI)

37.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 441 1e-87 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1137
AccB1I GGYRCC 1 cut(s) 575
AccB7I CCANNNNNTGG 3 cut(s) 199, 668, 1140
AccII CGCG 2 cut(s) 165, 778
AciI CCGC 2 cut(s) 659, 886
AclI AACGTT 1 cut(s) 498
AclWI GGATC 2 cut(s) 182, 651
AcoI YGGCCR 1 cut(s) 1296
AcsI RAATTY 4 cut(s) 1025, 1049, 1222, 1301
AcuI CTGAAG 2 cut(s) 765, 971
AfaI GTAC 1 cut(s) 1045
AfiI CCNNNNNNNGG 6 cut(s) 199, 269, 354, 640, 668, 1140
AjnI CCWGG 1 cut(s) 453
AjuI GAANNNNNNNTTGG 2 cut(s) 1155, 1187
AluBI AGCT 7 cut(s) 175, 220, 317, 332, 623, 749, 1321
AluI AGCT 7 cut(s) 175, 220, 317, 332, 623, 749, 1321
AlwI GGATC 2 cut(s) 182, 651
AoxI GGCC 1 cut(s) 1296
ApeKI GCWGC 7 cut(s) 554, 620, 749, 901, 947, 1001, 1321
ApoI RAATTY 4 cut(s) 1025, 1049, 1222, 1301
Asp700I GAANNNNTTC 2 cut(s) 27, 396
AspLEI GCGC 2 cut(s) 620, 901
AsuHPI GGTGA 5 cut(s) 25, 59, 648, 980, 1045
BalI TGGCCA 1 cut(s) 1298
BanI GGYRCC 1 cut(s) 575
BbsI GAAGAC 1 cut(s) 1296
BbvI GCAGC 7 cut(s) 541, 632, 736, 913, 959, 988, 1308
BccI CCATC 6 cut(s) 862, 913, 916, 1170, 1231, 1244
BceAI ACGGC 1 cut(s) 746
BcgI CGANNNNNNTGC 2 cut(s) 936, 970
BciT130I CCWGG 1 cut(s) 455
BclI TGATCA 1 cut(s) 583
BfmI CTRYAG 1 cut(s) 1209
BfuAI ACCTGC 1 cut(s) 1137
BisI GCNGC 7 cut(s) 555, 621, 750, 902, 948, 1002, 1322
BlsI GCNGC 7 cut(s) 556, 622, 751, 903, 949, 1003, 1323
Bme1390I CCNGG 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 577, 929
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 4 cut(s) 508, 748, 833, 1092
BpiI GAAGAC 1 cut(s) 1296
Bpu10I CCTNAGC 1 cut(s) 333
BpuEI CTTGAG 3 cut(s) 398, 722, 1202
BsaJI CCNNGG 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 1245, 1275
Bsc4I CCNNNNNNNGG 6 cut(s) 199, 269, 354, 640, 668, 1140
Bse1I ACTGG 4 cut(s) 579, 645, 753, 1137
Bse3DI GCAATG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 2 cut(s) 1117, 1181
BseLI CCNNNNNNNGG 6 cut(s) 199, 269, 354, 640, 668, 1140
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 544
BseNI ACTGG 4 cut(s) 579, 645, 753, 1137
BseRI GAGGAG 3 cut(s) 54, 978, 1331
BseXI GCAGC 7 cut(s) 541, 632, 736, 913, 959, 988, 1308
BsgI GTGCAG 1 cut(s) 1165
Bsh1236I CGCG 2 cut(s) 165, 778
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 1 cut(s) 1298
BshNI GGYRCC 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 169
BslI CCNNNNNNNGG 6 cut(s) 199, 269, 354, 640, 668, 1140
BsnI GGCC 1 cut(s) 1298
Bsp143I GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
Bsp68I TCGCGA 1 cut(s) 165
BspACI CCGC 2 cut(s) 659, 886
BspANI GGCC 1 cut(s) 1298
BspCNI CTCAG 1 cut(s) 543
BspFNI CGCG 2 cut(s) 165, 778
BspHI TCATGA 1 cut(s) 1080
BspLI GGNNCC 2 cut(s) 577, 929
BspMI ACCTGC 1 cut(s) 1137
BspPI GGATC 2 cut(s) 182, 651
BspT107I GGYRCC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 4 cut(s) 579, 645, 753, 1137
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
BssT1I CCWWGG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 6 cut(s) 118, 154, 592, 666, 1210, 1351
Bst6I CTCTTC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 830
BstC8I GCNNGC 2 cut(s) 1270, 1326
BstDEI CTNAG 6 cut(s) 7, 333, 402, 530, 994, 1356
BstF5I GGATG 2 cut(s) 1117, 1181
BstFNI CGCG 2 cut(s) 165, 778
BstHHI GCGC 2 cut(s) 620, 901
BstKTI GATC 9 cut(s) 103, 169, 190, 286, 376, 586, 646, 956, 985
BstMBI GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 3 cut(s) 758, 821, 830
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 1209
BstUI CGCG 2 cut(s) 165, 778
BstV1I GCAGC 7 cut(s) 541, 632, 736, 913, 959, 988, 1308
BstV2I GAAGAC 1 cut(s) 1296
BstX2I RGATCY 1 cut(s) 643
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 1 cut(s) 1298
BtgZI GCGATG 2 cut(s) 1019, 1263
BtsCI GGATG 2 cut(s) 1117, 1181
BtsIMutI CAGTG 6 cut(s) 586, 597, 638, 760, 797, 1347
BtuMI TCGCGA 1 cut(s) 165
BveI ACCTGC 1 cut(s) 1137
Cac8I GCNNGC 2 cut(s) 1270, 1326
CciI TCATGA 1 cut(s) 1080
CfoI GCGC 2 cut(s) 620, 901
Csp6I GTAC 1 cut(s) 1044
CviAII CATG 4 cut(s) 287, 864, 1081, 1294
CviQI GTAC 1 cut(s) 1044
DdeI CTNAG 6 cut(s) 7, 333, 402, 530, 994, 1356
DpnI GATC 9 cut(s) 102, 168, 189, 285, 375, 585, 645, 955, 984
DpnII GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
EaeI YGGCCR 1 cut(s) 1296
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 310
Eco57I CTGAAG 2 cut(s) 765, 971
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 310
FaeI CATG 4 cut(s) 290, 867, 1084, 1297
FalI AAGNNNNNCTT 2 cut(s) 969, 1001
FatI CATG 4 cut(s) 286, 863, 1080, 1293
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 7 cut(s) 555, 621, 750, 902, 948, 1002, 1322
FokI GGATG 2 cut(s) 1124, 1188
Fsp4HI GCNGC 7 cut(s) 555, 621, 750, 902, 948, 1002, 1322
GlaI GCGC 2 cut(s) 619, 900
GluI GCNGC 7 cut(s) 555, 621, 750, 902, 948, 1002, 1322
HaeIII GGCC 1 cut(s) 1298
HhaI GCGC 2 cut(s) 620, 901
Hin1II CATG 4 cut(s) 290, 867, 1084, 1297
Hin6I GCGC 2 cut(s) 618, 899
HinP1I GCGC 2 cut(s) 618, 899
HincII GTYRAC 2 cut(s) 108, 460
HindII GTYRAC 2 cut(s) 108, 460
HindIII AAGCTT 1 cut(s) 218
HpaI GTTAAC 1 cut(s) 108
HphI GGTGA 5 cut(s) 25, 59, 648, 980, 1045
Hpy166II GTNNAC 3 cut(s) 108, 460, 1076
Hpy188I TCNGA 4 cut(s) 225, 241, 745, 841
Hpy188III TCNNGA 5 cut(s) 164, 170, 377, 1081, 1219
Hpy8I GTNNAC 3 cut(s) 108, 460, 1076
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 8 cut(s) 10, 60, 83, 416, 532, 609, 1006, 1102
HpyCH4III ACNGT 6 cut(s) 118, 154, 592, 666, 1210, 1351
HpyCH4IV ACGT 2 cut(s) 498, 612
HpyF10VI GCNNNNNNNGC 3 cut(s) 758, 821, 830
HpyF3I CTNAG 6 cut(s) 7, 333, 402, 530, 994, 1356
HpySE526I ACGT 2 cut(s) 498, 612
Hsp92II CATG 4 cut(s) 290, 867, 1084, 1297
HspAI GCGC 2 cut(s) 618, 899
Ksp22I TGATCA 1 cut(s) 583
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
LmnI GCTCC 3 cut(s) 314, 1096, 1318
Lsp1109I GCAGC 7 cut(s) 541, 632, 736, 913, 959, 988, 1308
LweI GCATC 4 cut(s) 508, 748, 833, 1092
MaeII ACGT 2 cut(s) 498, 612
MaeIII GTNAC 2 cut(s) 654, 1351
MalI GATC 9 cut(s) 102, 168, 189, 285, 375, 585, 645, 955, 984
MboI GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
MflI RGATCY 1 cut(s) 643
MlsI TGGCCA 1 cut(s) 1298
MluCI AATT 7 cut(s) 392, 726, 873, 1025, 1049, 1222, 1301
MluNI TGGCCA 1 cut(s) 1298
MlyI GAGTC 1 cut(s) 789
MmeI TCCRAC 2 cut(s) 83, 387
Mox20I TGGCCA 1 cut(s) 1298
MroXI GAANNNNTTC 2 cut(s) 27, 396
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 3 cut(s) 107, 177, 1029
MslI CAYNNNNRTG 2 cut(s) 285, 862
Msp20I TGGCCA 1 cut(s) 1298
MspR9I CCNGG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 455
MvnI CGCG 2 cut(s) 165, 778
MwoI GCNNNNNNNGC 3 cut(s) 758, 821, 830
NdeII GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
NlaIII CATG 4 cut(s) 290, 867, 1084, 1297
NlaIV GGNNCC 2 cut(s) 577, 929
NmuCI GTSAC 2 cut(s) 654, 1351
NruI TCGCGA 1 cut(s) 165
PagI TCATGA 1 cut(s) 1080
PdmI GAANNNNTTC 2 cut(s) 27, 396
PfeI GAWTC 9 cut(s) 276, 397, 410, 480, 492, 705, 716, 769, 842
PflMI CCANNNNNTGG 3 cut(s) 199, 668, 1140
PkrI GCNGC 7 cut(s) 556, 622, 751, 903, 949, 1003, 1323
Ple19I CGATCG 1 cut(s) 169
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
Psp1406I AACGTT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 577, 929
PsuI RGATCY 1 cut(s) 643
PvuI CGATCG 1 cut(s) 169
RruI TCGCGA 1 cut(s) 165
RsaI GTAC 1 cut(s) 1045
RsaNI GTAC 1 cut(s) 1044
RseI CAYNNNNRTG 2 cut(s) 285, 862
SaqAI TTAA 3 cut(s) 107, 177, 1029
SatI GCNGC 7 cut(s) 555, 621, 750, 902, 948, 1002, 1322
Sau3AI GATC 9 cut(s) 100, 166, 187, 283, 373, 583, 643, 953, 982
SchI GAGTC 1 cut(s) 789
ScrFI CCNGG 1 cut(s) 455
SfaNI GCATC 4 cut(s) 508, 748, 833, 1092
SfcI CTRYAG 1 cut(s) 1209
SmiMI CAYNNNNRTG 2 cut(s) 285, 862
SmlI CTYRAG 3 cut(s) 377, 737, 1217
SmoI CTYRAG 3 cut(s) 377, 737, 1217
Sse9I AATT 7 cut(s) 392, 726, 873, 1025, 1049, 1222, 1301
SsiI CCGC 2 cut(s) 659, 886
SspI AATATT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 1 cut(s) 310
TaaI ACNGT 6 cut(s) 118, 154, 592, 666, 1210, 1351
TaiI ACGT 2 cut(s) 501, 615
TaqI TCGA 5 cut(s) 76, 99, 468, 783, 956
TasI AATT 7 cut(s) 392, 726, 873, 1025, 1049, 1222, 1301
TfiI GAWTC 9 cut(s) 276, 397, 410, 480, 492, 705, 716, 769, 842
Tru1I TTAA 3 cut(s) 107, 177, 1029
Tru9I TTAA 3 cut(s) 107, 177, 1029
TscAI CASTG 6 cut(s) 586, 597, 645, 760, 804, 1354
TseFI GTSAC 2 cut(s) 654, 1351
TseI GCWGC 7 cut(s) 554, 620, 749, 901, 947, 1001, 1321
Tsp45I GTSAC 2 cut(s) 654, 1351
TspDTI ATGAA 3 cut(s) 435, 833, 1097
TspRI CASTG 6 cut(s) 586, 597, 645, 760, 804, 1354
Van91I CCANNNNNTGG 3 cut(s) 199, 668, 1140
XapI RAATTY 4 cut(s) 1025, 1049, 1222, 1301
XcmI CCANNNNNNNNNTGG 1 cut(s) 861
XmnI GAANNNNTTC 2 cut(s) 27, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.