RchiOBHm_Chr4g0391831

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000200
Physical Location & Seq
Reverse (-)
7244581 .. 7245355
775 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36462

Sequence Viewer

Length: 723 bp
ATGGGCCTTGGCACTGATGTAGTGGCTCTTCCAACTGCAGAATTTGGTGTTGCAGCATCTATTTACCCACCACAAGATTTATTCATCAAGTCATTGCAAACTTCTGGGGAATATGTTTATGAAGATTGTGCAAAAAGGAGATTTGTTTTTGATGCCTCAAATATTCTACGTCTCAAGTCTAAAGCCGCCAGTGCCATCGTTCCAAATCCAACTCGGGTTGAAGTAGTGTCAGCGCTTATTTGGAAATGTGCAAGGGACGTATCAAGATCAAACTTAGGTGTTACAAGGCCAGCAATGCAAATTTCTAGCAGCAAACATGCGGAAACAAAGACACAAGAACGTGAGGCAACTCTTCAAAACTTGGTTGCTATACTACGGGAAAGTATTGAGAAATTTAAAGTGAAATATGGTAATGGAGTTAGCGGAGATGATATCTACCAACATTTCAAAGAGCATGAAGATTTAATGGGTAAGAATGATATAAATAACTATACATGTAGCAGTTGGTGTAGGTTTGGCTTCTATGAAGCCAATTTTGGATGGGGAAAGCCATCGTGGGTCACTATTCCAGGTTTCCCAATCAAGAATCTTTTTTTTTTTATTGATACAAAAGATGGAGAAGGCATAGAAGCATTCTTGAGTTTAAAAGAAGACGACATGGCTATAATTGAAACCAATAAGGAGTTGCTTGCGTATGCATCTCTCAATCCTATAGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

240

Amino Acids

26.82

Weight (kDa)

5.73

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 32 - 92 2.7e-08 Transferase family
Transferase PF02458 117 - 229 8e-15 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 186, 320, 423
AcsI RAATTY 3 cut(s) 41, 300, 392
AfeI AGCGCT 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 4 cut(s) 221, 356, 448, 671
AjnI CCWGG 1 cut(s) 568
AjuI GAANNNNNNNTTGG 2 cut(s) 519, 551
Alw26I GTCTC 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 213
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 2 cut(s) 4, 287
ApeKI GCWGC 2 cut(s) 53, 309
ApoI RAATTY 3 cut(s) 41, 300, 392
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 4
AvaI CYCGRG 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 1 cut(s) 657
BbvI GCAGC 2 cut(s) 65, 321
BccI CCATC 4 cut(s) 203, 534, 559, 608
BciT130I CCWGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 2 cut(s) 36, 711
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 3 cut(s) 54, 186, 310
BlsI GCNGC 3 cut(s) 55, 187, 311
Bme1390I CCNGG 1 cut(s) 570
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 3 cut(s) 65, 142, 707
BpiI GAAGAC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 158, 658
BsaJI CCNNGG 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 92, 300
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 1 cut(s) 545
BseMI GCAATG 2 cut(s) 92, 300
BseNI ACTGG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 65, 321
BshFI GGCC 2 cut(s) 6, 289
BsiHKCI CYCGRG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 269
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 2 cut(s) 6, 289
BsoBI CYCGRG 1 cut(s) 213
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 3 cut(s) 186, 320, 423
BspANI GGCC 2 cut(s) 6, 289
BspMAI CTGCAG 1 cut(s) 40
BspQI GCTCTTC 1 cut(s) 33
BsrDI GCAATG 2 cut(s) 92, 300
BsrI ACTGG 1 cut(s) 189
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 570
Bst6I CTCTTC 2 cut(s) 33, 357
BstC8I GCNNGC 2 cut(s) 291, 690
BstDEI CTNAG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 545
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 269
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 2 cut(s) 191, 295
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 2 cut(s) 320, 498
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 2 cut(s) 36, 711
BstV1I GCAGC 2 cut(s) 65, 321
BstV2I GAAGAC 1 cut(s) 657
BsuRI GGCC 2 cut(s) 6, 289
BtsCI GGATG 1 cut(s) 545
BtsIMutI CAGTG 2 cut(s) 12, 196
Cac8I GCNNGC 2 cut(s) 291, 690
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 4 cut(s) 317, 455, 495, 658
CviJI RGCY 8 cut(s) 6, 26, 185, 289, 519, 530, 550, 662
CviKI_1 RGCY 8 cut(s) 6, 26, 185, 289, 519, 530, 550, 662
DdeI CTNAG 1 cut(s) 274
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
DraI TTTAAA 2 cut(s) 397, 645
Eam1104I CTCTTC 2 cut(s) 33, 357
EarI CTCTTC 2 cut(s) 33, 357
Eco130I CCWWGG 1 cut(s) 7
Eco32I GATATC 1 cut(s) 433
Eco47III AGCGCT 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 568
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 7
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 4 cut(s) 320, 458, 498, 661
FaqI GGGAC 1 cut(s) 269
FatI CATG 4 cut(s) 316, 454, 494, 657
Fnu4HI GCNGC 3 cut(s) 54, 186, 310
FokI GGATG 1 cut(s) 552
Fsp4HI GCNGC 3 cut(s) 54, 186, 310
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 234
GluI GCNGC 3 cut(s) 54, 186, 310
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 2 cut(s) 6, 289
HhaI GCGC 1 cut(s) 235
Hin1II CATG 4 cut(s) 320, 458, 498, 661
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 1 cut(s) 586
Hpy188III TCNNGA 3 cut(s) 264, 583, 637
HpyAV CCTTC 1 cut(s) 614
HpyCH4IV ACGT 3 cut(s) 169, 258, 340
HpyCH4V TGCA 7 cut(s) 38, 53, 97, 131, 251, 298, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 295
HpyF3I CTNAG 1 cut(s) 274
HpySE526I ACGT 3 cut(s) 169, 258, 340
Hsp92II CATG 4 cut(s) 320, 458, 498, 661
HspAI GCGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 266
LguI GCTCTTC 1 cut(s) 33
LpnPI CCDG 5 cut(s) 90, 202, 303, 555, 582
Lsp1109I GCAGC 2 cut(s) 65, 321
LweI GCATC 3 cut(s) 65, 142, 707
MaeI CTAG 1 cut(s) 306
MaeII ACGT 3 cut(s) 169, 258, 340
MaeIII GTNAC 2 cut(s) 280, 559
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 5 cut(s) 20, 134, 344, 470, 662
MluCI AATT 5 cut(s) 41, 300, 392, 532, 666
MmeI TCCRAC 2 cut(s) 56, 233
MnlI CCTC 2 cut(s) 166, 337
Mph1103I ATGCAT 1 cut(s) 700
MseI TTAA 3 cut(s) 396, 464, 644
MspR9I CCNGG 1 cut(s) 570
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 2 cut(s) 191, 295
NdeII GATC 1 cut(s) 266
NlaIII CATG 4 cut(s) 320, 458, 498, 661
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 700
NspI RCATGY 2 cut(s) 320, 498
PciI ACATGT 1 cut(s) 494
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 1 cut(s) 632
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 3 cut(s) 55, 187, 311
PscI ACATGT 1 cut(s) 494
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspPI GGNCC 1 cut(s) 4
PstI CTGCAG 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 3 cut(s) 396, 464, 644
SatI GCNGC 3 cut(s) 54, 186, 310
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 570
SetI ASST 6 cut(s) 172, 261, 280, 343, 515, 574
SfaNI GCATC 3 cut(s) 65, 142, 707
SfcI CTRYAG 2 cut(s) 36, 711
SmlI CTYRAG 2 cut(s) 173, 637
SmoI CTYRAG 2 cut(s) 173, 637
Sse9I AATT 5 cut(s) 41, 300, 392, 532, 666
SsiI CCGC 3 cut(s) 186, 320, 423
SspI AATATT 1 cut(s) 163
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 7
TaiI ACGT 3 cut(s) 172, 261, 343
TasI AATT 5 cut(s) 41, 300, 392, 532, 666
TauI GCSGC 1 cut(s) 188
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 3 cut(s) 396, 464, 644
Tru9I TTAA 3 cut(s) 396, 464, 644
TscAI CASTG 2 cut(s) 19, 196
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 2 cut(s) 53, 309
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 4 cut(s) 73, 135, 471, 540
TspRI CASTG 2 cut(s) 19, 196
XapI RAATTY 3 cut(s) 41, 300, 392
XceI RCATGY 2 cut(s) 320, 498
XspI CTAG 1 cut(s) 306
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.