Rmu_ssc0000172.1_g000032

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000172.1
OG0000200
Physical Location & Seq
Reverse (-)
137379 .. 138724
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000172.1_g000032.1.cds

Sequence Viewer

Length: 1191 bp
atgggttcagaggtgaaggttgaagttgttcacaaagaaacaattagaccatcatctccaactcctcaccaccttcgatttttcagcctctccatttttgatcagctttctcctgaactatatttcccactacttttgttctatcccaacaatagaagaattttaaataatgcttcagtctgttgcaatgaccaaggagttacgtttcttgaagctcaggttacctgttccatatcaagggttttggacaaacctgatcttgagttgcagaaaaaattgattcctttaggagctacaaaaggaggcgcaggctatgatgttctactagtccagatcaacttctttgaacgtggtggaatcacaatcggattcaatgcttcgcataagatcattgatgcccacacacacagcacattcattaatagttgggctgcaatttctcttcgctttagtaccagtgataatattggagtagtggttcatcaacaacaatatattgctgcagcttctcttttcccaccactggattttttcagctcacctccacctattgtggagtttgctacagaaaatctgaagctgtcagtgctgcagtgcaaaatccttacccgagttgaagtcgtgtcagcgttgatttggaaatgcgcaatgcaagcatcaagagaaaactcggattgtagaagagtttcatcagcatggtgtccaattgtgaacatgaggagtatattggcgcagccctctacagaaaacttgatgggcaatcttttagggttctttgtagcaaaatcaactggagctgaaagcgatgatgatcttcaaggcctggttgctaaaatgaggaagcggtttgaggagtttgaggaaaactatggtactaatgatgttagcatggatgatatatgtgagctcctaacagagttagtgaagttgatgcataaaggtgatatagagtgctattaccccactagttggtgcaggtttcctttctatgaagccaattttggatggggaaagccactgataagcattcctgctactgaagaactcaagaatttgattacgttgatggatacgagtgatggagatggcatagaagtgcgcttgattttgaaagaagaagacgtggccatatttgaaaacaatgaggagctgctagcatatgcttctttaaatccctctgtcattagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

396

Amino Acids

44.31

Weight (kDa)

5.04

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 646
Acc36I ACCTGC 1 cut(s) 966
AccB7I CCANNNNNTGG 1 cut(s) 969
AciI CCGC 1 cut(s) 844
AcoI YGGCCR 1 cut(s) 1125
AcsI RAATTY 2 cut(s) 159, 1051
AcuI CTGAAG 3 cut(s) 159, 596, 1059
AfaI GTAC 2 cut(s) 454, 874
AfiI CCNNNNNNNGG 3 cut(s) 237, 523, 969
AgsI TTSAA 8 cut(s) 23, 212, 347, 373, 617, 818, 1111, 1136
AhlI ACTAGT 2 cut(s) 325, 965
AjiI CACGTC 1 cut(s) 1123
AjnI CCWGG 1 cut(s) 822
AjuI GAANNNNNNNTTGG 2 cut(s) 984, 1016
AloI GAACNNNNNNTCC 4 cut(s) 108, 140, 462, 494
AluBI AGCT 9 cut(s) 106, 215, 293, 506, 537, 580, 797, 907, 1150
AluI AGCT 9 cut(s) 106, 215, 293, 506, 537, 580, 797, 907, 1150
Alw21I GWGCWC 1 cut(s) 909
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 2 cut(s) 820, 1125
ApeKI GCWGC 6 cut(s) 431, 500, 503, 589, 733, 1150
ApoI RAATTY 2 cut(s) 159, 1051
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 2 cut(s) 27, 685
AspLEI GCGC 4 cut(s) 308, 647, 733, 1101
AsuHPI GGTGA 4 cut(s) 25, 59, 531, 953
AsuNHI GCTAGC 1 cut(s) 1153
AvaI CYCGRG 1 cut(s) 609
BalI TGGCCA 1 cut(s) 1127
BanII GRGCYC 1 cut(s) 909
BbsI GAAGAC 1 cut(s) 1125
Bbv12I GWGCWC 1 cut(s) 909
BbvI GCAGC 6 cut(s) 418, 487, 515, 576, 745, 1137
BccI CCATC 6 cut(s) 58, 748, 999, 1060, 1073, 1079
BciT130I CCWGG 1 cut(s) 824
BciVI GTATCC 1 cut(s) 1063
BclI TGATCA 1 cut(s) 100
BcuI ACTAGT 2 cut(s) 325, 965
BfaI CTAG 3 cut(s) 326, 966, 1154
BfmI CTRYAG 4 cut(s) 501, 564, 590, 741
BfuAI ACCTGC 1 cut(s) 966
BfuI GTATCC 1 cut(s) 1063
BisI GCNGC 6 cut(s) 432, 501, 504, 590, 734, 1151
BlsI GCNGC 6 cut(s) 433, 502, 505, 591, 735, 1152
Bme1390I CCNGG 1 cut(s) 824
BmeT110I CYCGRG 1 cut(s) 609
BmgBI CACGTC 1 cut(s) 1123
BmrFI CCNGG 1 cut(s) 824
BmsI GCATC 3 cut(s) 385, 665, 921
BmtI GCTAGC 1 cut(s) 1157
BpiI GAAGAC 1 cut(s) 1125
BpmI CTGGAG 1 cut(s) 813
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 281, 1031
BsaBI GATNNNNATC 1 cut(s) 810
BsaJI CCNNGG 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bsc4I CCNNNNNNNGG 3 cut(s) 237, 523, 969
Bse1I ACTGG 3 cut(s) 456, 528, 796
Bse3DI GCAATG 2 cut(s) 193, 654
Bse8I GATNNNNATC 1 cut(s) 810
BseBI CCWGG 1 cut(s) 824
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 898, 1010
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 3 cut(s) 237, 523, 969
BseMI GCAATG 2 cut(s) 193, 654
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 3 cut(s) 456, 528, 796
BseRI GAGGAG 4 cut(s) 54, 733, 866, 1160
BseXI GCAGC 6 cut(s) 418, 487, 515, 576, 745, 1137
BsgI GTGCAG 1 cut(s) 994
BshFI GGCC 2 cut(s) 822, 1127
BsiHKAI GWGCWC 1 cut(s) 909
BsiHKCI CYCGRG 1 cut(s) 609
BslI CCNNNNNNNGG 3 cut(s) 237, 523, 969
BsmI GAATGC 1 cut(s) 1026
BsnI GGCC 2 cut(s) 822, 1127
BsoBI CYCGRG 1 cut(s) 609
Bsp1286I GDGCHC 1 cut(s) 909
Bsp143I GATC 5 cut(s) 100, 256, 333, 387, 811
BspACI CCGC 1 cut(s) 844
BspANI GGCC 2 cut(s) 822, 1127
BspCNI CTCAG 1 cut(s) 229
BspMAI CTGCAG 2 cut(s) 505, 594
BspMI ACCTGC 1 cut(s) 966
BspOI GCTAGC 1 cut(s) 1157
BsrDI GCAATG 2 cut(s) 193, 654
BsrI ACTGG 3 cut(s) 456, 528, 796
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 5 cut(s) 100, 256, 333, 387, 811
BssT1I CCWWGG 1 cut(s) 193
Bst2UI CCWGG 1 cut(s) 824
Bst6I CTCTTC 2 cut(s) 447, 676
BstC8I GCNNGC 3 cut(s) 310, 654, 1155
BstDEI CTNAG 1 cut(s) 216
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 2 cut(s) 898, 1010
BstHHI GCGC 4 cut(s) 308, 647, 733, 1101
BstKTI GATC 5 cut(s) 103, 259, 336, 390, 814
BstMBI GATC 5 cut(s) 100, 256, 333, 387, 811
BstMWI GCNNNNNNNGC 2 cut(s) 586, 653
BstNI CCWGG 1 cut(s) 824
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 822
BstSFI CTRYAG 4 cut(s) 501, 564, 590, 741
BstV1I GCAGC 6 cut(s) 418, 487, 515, 576, 745, 1137
BstV2I GAAGAC 1 cut(s) 1125
BsuI GTATCC 1 cut(s) 1063
BsuRI GGCC 2 cut(s) 822, 1127
BtgZI GCGATG 1 cut(s) 819
BtrI CACGTC 1 cut(s) 1123
BtsCI GGATG 2 cut(s) 898, 1010
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 5 cut(s) 463, 521, 591, 599, 1016
BveI ACCTGC 1 cut(s) 966
Cac8I GCNNGC 3 cut(s) 310, 654, 1155
CfoI GCGC 4 cut(s) 308, 647, 733, 1101
Csp6I GTAC 2 cut(s) 453, 873
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 3 cut(s) 696, 715, 889
CviQI GTAC 2 cut(s) 453, 873
DdeI CTNAG 1 cut(s) 216
DpnI GATC 5 cut(s) 102, 258, 335, 389, 813
DpnII GATC 5 cut(s) 100, 256, 333, 387, 811
DraI TTTAAA 2 cut(s) 165, 1170
EaeI YGGCCR 1 cut(s) 1125
Eam1104I CTCTTC 2 cut(s) 447, 676
EarI CTCTTC 2 cut(s) 447, 676
Ecl136II GAGCTC 1 cut(s) 907
Eco130I CCWWGG 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 822
Eco24I GRGCYC 1 cut(s) 909
Eco53kI GAGCTC 1 cut(s) 907
Eco57I CTGAAG 3 cut(s) 159, 596, 1059
Eco88I CYCGRG 1 cut(s) 609
Eco91I GGTNACC 1 cut(s) 220
EcoICRI GAGCTC 1 cut(s) 907
EcoO65I GGTNACC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 822
EcoT14I CCWWGG 1 cut(s) 193
EcoT22I ATGCAT 1 cut(s) 936
EcoT38I GRGCYC 1 cut(s) 909
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 699, 718, 892
FatI CATG 3 cut(s) 695, 714, 888
FauNDI CATATG 1 cut(s) 1159
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 6 cut(s) 432, 501, 504, 590, 734, 1151
FokI GGATG 2 cut(s) 905, 1017
FriOI GRGCYC 1 cut(s) 909
Fsp4HI GCNGC 6 cut(s) 432, 501, 504, 590, 734, 1151
FspBI CTAG 3 cut(s) 326, 966, 1154
FspI TGCGCA 1 cut(s) 646
GlaI GCGC 4 cut(s) 307, 646, 732, 1100
GluI GCNGC 6 cut(s) 432, 501, 504, 590, 734, 1151
GsuI CTGGAG 1 cut(s) 813
HaeIII GGCC 2 cut(s) 822, 1127
HhaI GCGC 4 cut(s) 308, 647, 733, 1101
Hin1II CATG 3 cut(s) 699, 718, 892
Hin6I GCGC 4 cut(s) 306, 645, 731, 1099
HinP1I GCGC 4 cut(s) 306, 645, 731, 1099
HinfI GANTC 3 cut(s) 280, 357, 369
HphI GGTGA 4 cut(s) 25, 59, 531, 953
Hpy166II GTNNAC 2 cut(s) 31, 712
Hpy188I TCNGA 4 cut(s) 10, 368, 576, 673
Hpy188III TCNNGA 6 cut(s) 113, 209, 260, 331, 660, 1048
Hpy8I GTNNAC 2 cut(s) 31, 712
HpyAV CCTTC 2 cut(s) 10, 83
HpyCH4IV ACGT 4 cut(s) 203, 349, 1061, 1122
HpyCH4V TGCA 9 cut(s) 186, 268, 434, 503, 592, 597, 652, 934, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 586, 653
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 4 cut(s) 203, 349, 1061, 1122
Hsp92II CATG 3 cut(s) 699, 718, 892
HspAI GCGC 4 cut(s) 306, 645, 731, 1099
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 5 cut(s) 100, 256, 333, 387, 811
LmnI GCTCC 4 cut(s) 290, 794, 912, 1147
Lsp1109I GCAGC 6 cut(s) 418, 487, 515, 576, 745, 1137
LweI GCATC 3 cut(s) 385, 665, 921
MaeI CTAG 3 cut(s) 326, 966, 1154
MaeII ACGT 4 cut(s) 203, 349, 1061, 1122
MaeIII GTNAC 2 cut(s) 199, 220
MalI GATC 5 cut(s) 102, 258, 335, 389, 813
MboI GATC 5 cut(s) 100, 256, 333, 387, 811
MboII GAAGA 7 cut(s) 168, 434, 693, 806, 1052, 1127, 1130
MfeI CAATTG 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 909
MlsI TGGCCA 1 cut(s) 1127
MluCI AATT 7 cut(s) 42, 159, 275, 435, 705, 997, 1051
MluNI TGGCCA 1 cut(s) 1127
MmeI TCCRAC 1 cut(s) 83
Mox20I TGGCCA 1 cut(s) 1127
Mph1103I ATGCAT 1 cut(s) 936
MroXI GAANNNNTTC 2 cut(s) 27, 685
MscI TGGCCA 1 cut(s) 1127
MseI TTAA 3 cut(s) 164, 420, 1169
MslI CAYNNNNRTG 3 cut(s) 694, 939, 1094
Msp20I TGGCCA 1 cut(s) 1127
MspR9I CCNGG 1 cut(s) 824
MunI CAATTG 1 cut(s) 705
Mva1269I GAATGC 1 cut(s) 1026
MvaI CCWGG 1 cut(s) 824
MwoI GCNNNNNNNGC 2 cut(s) 586, 653
NdeI CATATG 1 cut(s) 1159
NdeII GATC 5 cut(s) 100, 256, 333, 387, 811
NheI GCTAGC 1 cut(s) 1153
NlaIII CATG 3 cut(s) 699, 718, 892
NsbI TGCGCA 1 cut(s) 646
NsiI ATGCAT 1 cut(s) 936
PceI AGGCCT 1 cut(s) 822
PctI GAATGC 1 cut(s) 1026
PdmI GAANNNNTTC 2 cut(s) 27, 685
PfeI GAWTC 3 cut(s) 280, 357, 369
PflMI CCANNNNNTGG 1 cut(s) 969
PkrI GCNGC 6 cut(s) 433, 502, 505, 591, 735, 1152
PshBI ATTAAT 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 909
Psp6I CCWGG 1 cut(s) 822
PspEI GGTNACC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 822
PstI CTGCAG 2 cut(s) 505, 594
RsaI GTAC 2 cut(s) 454, 874
RsaNI GTAC 2 cut(s) 453, 873
RseI CAYNNNNRTG 3 cut(s) 694, 939, 1094
SacI GAGCTC 1 cut(s) 909
SaqAI TTAA 3 cut(s) 164, 420, 1169
SatI GCNGC 6 cut(s) 432, 501, 504, 590, 734, 1151
Sau3AI GATC 5 cut(s) 100, 256, 333, 387, 811
ScrFI CCNGG 1 cut(s) 824
SduI GDGCHC 1 cut(s) 909
SfaNI GCATC 3 cut(s) 385, 665, 921
SfcI CTRYAG 4 cut(s) 501, 564, 590, 741
SmiMI CAYNNNNRTG 3 cut(s) 694, 939, 1094
SmlI CTYRAG 2 cut(s) 260, 1046
SmoI CTYRAG 2 cut(s) 260, 1046
SpeI ACTAGT 2 cut(s) 325, 965
Sse9I AATT 7 cut(s) 42, 159, 275, 435, 705, 997, 1051
SseBI AGGCCT 1 cut(s) 822
SsiI CCGC 1 cut(s) 844
SspI AATATT 1 cut(s) 466
SspMI CTAG 3 cut(s) 326, 966, 1154
SstI GAGCTC 1 cut(s) 909
StuI AGGCCT 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 822
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 4 cut(s) 206, 352, 1064, 1125
TaqI TCGA 1 cut(s) 76
TasI AATT 7 cut(s) 42, 159, 275, 435, 705, 997, 1051
TfiI GAWTC 3 cut(s) 280, 357, 369
Tru1I TTAA 3 cut(s) 164, 420, 1169
Tru9I TTAA 3 cut(s) 164, 420, 1169
TscAI CASTG 5 cut(s) 463, 528, 591, 599, 1023
TseI GCWGC 6 cut(s) 431, 500, 503, 589, 733, 1150
TspDTI ATGAA 4 cut(s) 406, 470, 678, 1005
TspRI CASTG 5 cut(s) 463, 528, 591, 599, 1023
Van91I CCANNNNNTGG 1 cut(s) 969
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 2 cut(s) 159, 1051
XmnI GAANNNNTTC 2 cut(s) 27, 685
XspI CTAG 3 cut(s) 326, 966, 1154
Zsp2I ATGCAT 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.