Rmu_co7991326.1_g000001

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co7991326.1
OG0000200
Physical Location & Seq
Forward (+)
26 .. 454
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co7991326.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
atgggaaatcttgtaggagttgtacatatagtaaagacacgagaaagtgatgcaactcttcaaagcttggttgctatactacggcaaaccattgaggaatttaaagtgaaatattgtaatggagttagtggggatgatatctgccaacattttaatgagcacagagatttaatgggtaaggatgatataaatagctatggaattaccagttggtgcaggtttggcttctatgaagccaattttggatggggaaagccatcttgggtcactattccaggtatgccattcaagaatgtaattatattaattgacacaaaagatggtgaaggcatggaagcgatcgtgagttttaaagaaaaagacatggctgtaattgaaaccaataaggagctgcttgcatatgcttctcttaatcccactgttatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

142

Amino Acids

15.92

Weight (kDa)

5.14

Isoelectric Point (pI)

27.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 207
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 3 cut(s) 62, 289, 377
AjnI CCWGG 1 cut(s) 274
AjuI GAANNNNNNNTTGG 6 cut(s) 193, 225, 225, 244, 257, 276
AluBI AGCT 3 cut(s) 66, 195, 391
AluI AGCT 3 cut(s) 66, 195, 391
Alw21I GWGCWC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 391
ApoI RAATTY 1 cut(s) 98
AseI ATTAAT 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 335
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 378
BccI CCATC 3 cut(s) 240, 265, 314
BceAI ACGGC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 3 cut(s) 139, 187, 251
BseNI ACTGG 1 cut(s) 207
BseXI GCAGC 1 cut(s) 378
BsgI GTGCAG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 342
BsiEI CGRYCG 1 cut(s) 342
BsiHKAI GWGCWC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 1 cut(s) 339
BspMI ACCTGC 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 22
BsrI ACTGG 1 cut(s) 207
BssMI GATC 1 cut(s) 339
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 421
Bst6I CTCTTC 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 396
BstF5I GGATG 3 cut(s) 139, 187, 251
BstKTI GATC 1 cut(s) 342
BstMBI GATC 1 cut(s) 339
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 378
BtsCI GGATG 3 cut(s) 139, 187, 251
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 23
CviAII CATG 2 cut(s) 331, 364
CviJI RGCY 7 cut(s) 66, 195, 225, 236, 256, 368, 391
CviKI_1 RGCY 7 cut(s) 66, 195, 225, 236, 256, 368, 391
CviQI GTAC 1 cut(s) 23
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
DraI TTTAAA 2 cut(s) 103, 352
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco32I GATATC 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 139
FaeI CATG 2 cut(s) 334, 367
FatI CATG 2 cut(s) 330, 363
FauNDI CATATG 1 cut(s) 400
Fnu4HI GCNGC 1 cut(s) 392
FokI GGATG 3 cut(s) 146, 194, 258
Fsp4HI GCNGC 1 cut(s) 392
GluI GCNGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 334, 367
HindIII AAGCTT 1 cut(s) 64
HphI GGTGA 1 cut(s) 335
Hpy188III TCNNGA 2 cut(s) 289, 343
HpyAV CCTTC 1 cut(s) 320
HpyCH4III ACNGT 1 cut(s) 421
HpyCH4V TGCA 3 cut(s) 53, 216, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 334, 367
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 4 cut(s) 202, 220, 261, 288
Lsp1109I GCAGC 1 cut(s) 378
LweI GCATC 1 cut(s) 40
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 6 cut(s) 98, 201, 238, 297, 306, 372
MnlI CCTC 1 cut(s) 88
MseI TTAA 6 cut(s) 102, 153, 170, 305, 351, 411
MslI CAYNNNNRTG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeI CATATG 1 cut(s) 400
NdeII GATC 1 cut(s) 339
NlaIII CATG 2 cut(s) 334, 367
NmuCI GTSAC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 393
Ple19I CGATCG 1 cut(s) 342
PshBI ATTAAT 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PvuI CGATCG 1 cut(s) 342
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 6 cut(s) 102, 153, 170, 305, 351, 411
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 162
SetI ASST 5 cut(s) 68, 197, 221, 280, 393
SfaNI GCATC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 6 cut(s) 98, 201, 238, 297, 306, 372
SspI AATATT 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 421
TasI AATT 6 cut(s) 98, 201, 238, 297, 306, 372
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 6 cut(s) 102, 153, 170, 305, 351, 411
Tru9I TTAA 6 cut(s) 102, 153, 170, 305, 351, 411
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 1 cut(s) 424
VspI ATTAAT 1 cut(s) 305
XapI RAATTY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.