MD03G1110800.v1.1

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000200
Physical Location & Seq
Forward (+)
9664852 .. 9665814
963 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1110800.v1.1.491

Sequence Viewer

Length: 963 bp
ATGACCACTTCAGAGATCAAGGTTGAAGTCATCCACAAGGAAACAATTAAACCATCCTCACCAACTCCTCGCCACTTCAAAACCCTCAAACTTTCTGTCTTTGATCAGATTGCTTCCGATCTTTACGTTCCGCTTCTGTTCTTCTATCGACGCCATAATTCTTCAGTCCCTTCTGCTGAAATATCCAATATTCTAAAAACATCATTATCTAAAACTCTAACTCTCTTTTATCCCTGGGCAGGCCAATTCCAATATAATGATTCAATCGGCTGCAATGACCGTGGGGCTGAGTTTCTTGAAGCCCAAGTCAACTGTCCGATATCAAAGATTTTGGACAATCCGGATGCTCATCAAATGCTATTTAAGCAACTTCTTCCAGCTGAGCATATGGGATTAGCAAGAGCTGCAGGATCAGGCAATCTTATACTAGTCCAGGCCAGCTTCTTTGAATGCGGTGGGGTAGCAATCGGGGCCAGTATTTCTCACAAGGTCGCCGATGCCATTACAGGCAGCACATTCATTAATACTTGGGCTGCATTTGCCTTTGGCTCATCAGTCGTCAGTAGTACTACTACTGGTGATCATCAAGAGGTGGTGAAGTTTCCCGCTCCAAAAATATTTGGTGTCCCAGCTTCGCTCTTCCCTCCACTAGATTTCCTAAACACACACCACCCCGTCGTGGAATATGCTAAAGAAAAGTGTATGACAAGGAGATTTCTGTTTGGTGCCTCAGAGATTGCTGCTCTCAAGTCCAAATCTGCAAGCTCCACCGTGCCAAATCCTTCATGCGTTGAAGTTGTGTCCGCTCTCGTTTGGAAATGCGCAATGGAAGCATCAAGATCAAACTCGGGTTTTATGAAGCCCTCCGTATGGTGCCAAGCGGTGAATATGCGTGAAATATTAGCTAAGCCCTTGGCGGACAAAAACTTATTGGGAAGTCTTGTGGGGTTTGTTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

321

Amino Acids

34.87

Weight (kDa)

8.41

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 311 9.9e-63 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 823
AccB1I GGYRCC 2 cut(s) 725, 873
AccBSI CCGCTC 2 cut(s) 608, 806
AccIII TCCGGA 1 cut(s) 340
AciI CCGC 6 cut(s) 131, 453, 606, 804, 881, 917
AclWI GGATC 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 1 cut(s) 568
AfiI CCNNNNNNNGG 3 cut(s) 239, 679, 870
AgsI TTSAA 6 cut(s) 26, 79, 264, 299, 449, 794
AhlI ACTAGT 1 cut(s) 427
AjnI CCWGG 2 cut(s) 233, 432
AluBI AGCT 6 cut(s) 380, 404, 441, 632, 765, 905
AluI AGCT 6 cut(s) 380, 404, 441, 632, 765, 905
AlwI GGATC 1 cut(s) 418
Ama87I CYCGRG 1 cut(s) 847
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 3 cut(s) 241, 435, 471
ApeKI GCWGC 5 cut(s) 270, 404, 510, 533, 740
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AseI ATTAAT 1 cut(s) 522
AspLEI GCGC 1 cut(s) 824
AspS9I GGNCC 1 cut(s) 471
AsuHPI GGTGA 4 cut(s) 51, 590, 607, 895
AvaI CYCGRG 1 cut(s) 847
BanI GGYRCC 2 cut(s) 725, 873
BbvI GCAGC 5 cut(s) 257, 391, 520, 522, 727
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 235, 434
BclI TGATCA 2 cut(s) 103, 580
BcuI ACTAGT 1 cut(s) 427
BfaI CTAG 2 cut(s) 428, 650
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 5 cut(s) 271, 405, 511, 534, 741
BlpI GCTNAGC 2 cut(s) 381, 906
BlsI GCNGC 5 cut(s) 272, 406, 512, 535, 742
BmcAI AGTACT 1 cut(s) 568
Bme1390I CCNGG 2 cut(s) 235, 434
BmeT110I CYCGRG 1 cut(s) 847
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 3 cut(s) 472, 727, 875
BmrFI CCNGG 2 cut(s) 235, 434
BmsI GCATC 3 cut(s) 334, 487, 842
Bpu1102I GCTNAGC 2 cut(s) 381, 906
BpuEI CTTGAG 1 cut(s) 731
BsaBI GATNNNNATC 1 cut(s) 348
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 4 cut(s) 233, 234, 280, 912
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 679, 870
Bse1I ACTGG 2 cut(s) 474, 580
Bse3DI GCAATG 2 cut(s) 280, 831
Bse8I GATNNNNATC 1 cut(s) 348
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 2 cut(s) 235, 434
BseDI CCNNGG 4 cut(s) 233, 234, 280, 912
BseGI GGATG 3 cut(s) 30, 53, 349
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 3 cut(s) 239, 679, 870
BseMI GCAATG 2 cut(s) 280, 831
BseMII CTCAG 3 cut(s) 279, 372, 744
BseNI ACTGG 2 cut(s) 474, 580
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 5 cut(s) 257, 391, 520, 522, 727
BseYI CCCAGC 1 cut(s) 628
BshFI GGCC 3 cut(s) 243, 437, 473
BshNI GGYRCC 2 cut(s) 725, 873
BsiHKCI CYCGRG 1 cut(s) 847
BsiSI CCGG 1 cut(s) 341
BslFI GGGAC 2 cut(s) 152, 611
BslI CCNNNNNNNGG 3 cut(s) 239, 679, 870
BsmFI GGGAC 2 cut(s) 152, 611
BsmI GAATGC 1 cut(s) 455
BsnI GGCC 3 cut(s) 243, 437, 473
BsoBI CYCGRG 1 cut(s) 847
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 6 cut(s) 15, 103, 118, 410, 580, 839
Bsp1720I GCTNAGC 2 cut(s) 381, 906
BspACI CCGC 6 cut(s) 131, 453, 606, 804, 881, 917
BspANI GGCC 3 cut(s) 243, 437, 473
BspCNI CTCAG 3 cut(s) 280, 373, 743
BspEI TCCGGA 1 cut(s) 340
BspLI GGNNCC 3 cut(s) 472, 727, 875
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 644
BspT107I GGYRCC 2 cut(s) 725, 873
BsrBI CCGCTC 2 cut(s) 608, 806
BsrDI GCAATG 2 cut(s) 280, 831
BsrI ACTGG 2 cut(s) 474, 580
BssECI CCNNGG 4 cut(s) 233, 234, 280, 912
BssMI GATC 6 cut(s) 15, 103, 118, 410, 580, 839
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 912
Bst2UI CCWGG 2 cut(s) 235, 434
Bst4CI ACNGT 3 cut(s) 281, 314, 772
Bst6I CTCTTC 1 cut(s) 644
BstACI GRCGYC 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 404
BstC8I GCNNGC 3 cut(s) 241, 439, 763
BstDEI CTNAG 4 cut(s) 288, 381, 730, 906
BstDSI CCRYGG 1 cut(s) 280
BstF5I GGATG 3 cut(s) 30, 53, 349
BstHHI GCGC 1 cut(s) 824
BstKTI GATC 6 cut(s) 18, 106, 121, 413, 583, 842
BstMBI GATC 6 cut(s) 15, 103, 118, 410, 580, 839
BstMWI GCNNNNNNNGC 5 cut(s) 364, 404, 470, 539, 830
BstNI CCWGG 2 cut(s) 235, 434
BstSCI CCNGG 2 cut(s) 233, 432
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 5 cut(s) 257, 391, 520, 522, 727
BsuRI GGCC 3 cut(s) 243, 437, 473
BtgI CCRYGG 1 cut(s) 280
BtsCI GGATG 3 cut(s) 30, 53, 349
Cac8I GCNNGC 3 cut(s) 241, 439, 763
CfoI GCGC 1 cut(s) 824
Cfr13I GGNCC 1 cut(s) 471
CseI GACGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 567
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 1 cut(s) 786
CviQI GTAC 1 cut(s) 567
DdeI CTNAG 4 cut(s) 288, 381, 730, 906
DpnI GATC 6 cut(s) 17, 105, 120, 412, 582, 841
DpnII GATC 6 cut(s) 15, 103, 118, 410, 580, 839
Eam1104I CTCTTC 1 cut(s) 644
EarI CTCTTC 1 cut(s) 644
EciI GGCGGA 1 cut(s) 932
Eco130I CCWWGG 1 cut(s) 912
Eco32I GATATC 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 847
EcoRII CCWGG 2 cut(s) 233, 432
EcoRV GATATC 1 cut(s) 321
EcoT14I CCWWGG 1 cut(s) 912
ErhI CCWWGG 1 cut(s) 912
FaeI CATG 1 cut(s) 789
FaqI GGGAC 2 cut(s) 152, 611
FatI CATG 1 cut(s) 785
FauI CCCGC 1 cut(s) 613
FauNDI CATATG 1 cut(s) 387
FbaI TGATCA 2 cut(s) 103, 580
Fnu4HI GCNGC 5 cut(s) 271, 405, 511, 534, 741
FokI GGATG 3 cut(s) 17, 40, 356
Fsp4HI GCNGC 5 cut(s) 271, 405, 511, 534, 741
FspBI CTAG 2 cut(s) 428, 650
FspI TGCGCA 1 cut(s) 823
GlaI GCGC 1 cut(s) 823
GluI GCNGC 5 cut(s) 271, 405, 511, 534, 741
GsaI CCCAGC 1 cut(s) 632
HaeIII GGCC 3 cut(s) 243, 437, 473
HapII CCGG 1 cut(s) 341
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 824
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 1 cut(s) 789
Hin6I GCGC 1 cut(s) 822
HinP1I GCGC 1 cut(s) 822
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 1 cut(s) 260
HpaII CCGG 1 cut(s) 341
HphI GGTGA 4 cut(s) 51, 590, 607, 895
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 5 cut(s) 13, 108, 118, 318, 733
Hpy188III TCNNGA 4 cut(s) 296, 341, 587, 837
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 2 cut(s) 153, 680
HpyAV CCTTC 2 cut(s) 180, 792
HpyCH4III ACNGT 3 cut(s) 281, 314, 772
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 273, 407, 536, 761
HpyF10VI GCNNNNNNNGC 5 cut(s) 364, 404, 470, 539, 830
HpyF3I CTNAG 4 cut(s) 288, 381, 730, 906
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 1 cut(s) 789
HspAI GCGC 1 cut(s) 822
Kpn2I TCCGGA 1 cut(s) 340
Ksp22I TGATCA 2 cut(s) 103, 580
Kzo9I GATC 6 cut(s) 15, 103, 118, 410, 580, 839
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 2 cut(s) 613, 770
Lsp1109I GCAGC 5 cut(s) 257, 391, 520, 522, 727
LweI GCATC 3 cut(s) 334, 487, 842
MaeI CTAG 2 cut(s) 428, 650
MaeII ACGT 1 cut(s) 126
MalI GATC 6 cut(s) 17, 105, 120, 412, 582, 841
MbiI CCGCTC 2 cut(s) 608, 806
MboI GATC 6 cut(s) 15, 103, 118, 410, 580, 839
MboII GAAGA 4 cut(s) 133, 153, 365, 631
MluCI AATT 3 cut(s) 45, 157, 245
MnlI CCTC 7 cut(s) 67, 78, 95, 583, 654, 739, 874
MroI TCCGGA 1 cut(s) 340
MseI TTAA 3 cut(s) 48, 363, 522
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 2 cut(s) 235, 434
Mva1269I GAATGC 1 cut(s) 455
MvaI CCWGG 2 cut(s) 235, 434
MwoI GCNNNNNNNGC 5 cut(s) 364, 404, 470, 539, 830
NdeI CATATG 1 cut(s) 387
NdeII GATC 6 cut(s) 15, 103, 118, 410, 580, 839
NlaIII CATG 1 cut(s) 789
NlaIV GGNNCC 3 cut(s) 472, 727, 875
NsbI TGCGCA 1 cut(s) 823
PasI CCCWGGG 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 644
PctI GAATGC 1 cut(s) 455
PfeI GAWTC 1 cut(s) 260
PkrI GCNGC 5 cut(s) 272, 406, 512, 535, 742
PshBI ATTAAT 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 233, 432
PspFI CCCAGC 1 cut(s) 628
PspGI CCWGG 2 cut(s) 233, 432
PspN4I GGNNCC 3 cut(s) 472, 727, 875
PspPI GGNCC 1 cut(s) 471
PstI CTGCAG 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 568
RsaNI GTAC 1 cut(s) 567
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 3 cut(s) 48, 363, 522
SatI GCNGC 5 cut(s) 271, 405, 511, 534, 741
Sau3AI GATC 6 cut(s) 15, 103, 118, 410, 580, 839
Sau96I GGNCC 1 cut(s) 471
ScaI AGTACT 1 cut(s) 568
ScrFI CCNGG 2 cut(s) 235, 434
SfaNI GCATC 3 cut(s) 334, 487, 842
SfcI CTRYAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SpeI ACTAGT 1 cut(s) 427
Sse9I AATT 3 cut(s) 45, 157, 245
SsiI CCGC 6 cut(s) 131, 453, 606, 804, 881, 917
SspI AATATT 3 cut(s) 190, 618, 900
SspMI CTAG 2 cut(s) 428, 650
StyD4I CCNGG 2 cut(s) 233, 432
StyI CCWWGG 1 cut(s) 912
TaaI ACNGT 3 cut(s) 281, 314, 772
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 148
TasI AATT 3 cut(s) 45, 157, 245
TatI WGTACW 1 cut(s) 566
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 3 cut(s) 48, 363, 522
Tru9I TTAA 3 cut(s) 48, 363, 522
TseI GCWGC 5 cut(s) 270, 404, 510, 533, 740
TspDTI ATGAA 3 cut(s) 508, 774, 872
TspGWI ACGGA 1 cut(s) 856
VspI ATTAAT 1 cut(s) 522
XspI CTAG 2 cut(s) 428, 650
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.