pycom11g24430

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000200
Physical Location & Seq
Reverse (-)
27331646 .. 27332931
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g24430.1

Sequence Viewer

Length: 1245 bp
ATGAAGGTTGACGTCGTTCACTCTCCAACTCCTTACCACCTCAGAAATTTGGGGCTATCTGTTTTTAATCAGTTTCAACCTGATATTCATATCCCAATAATTCTCTTCTATCGTTGCAGTCCCGATGAAGTCAATAACAATTGCCATTGCCTGTTTGCTGAAAAGCTCAAGCTTCTAAAGAAATCATTATCAAAAGCCCTCACTCGCTTCTATCCTTTTGTGGGAAAATTTGAATACAATGTTTCGATCAGCTGCAATGATCATGGAATTTTGGACAAACCTCAATTTTCGATCCTAAATCAATTGCTTCCAACTGCTATAGGATCCAATCAATCAGAAGCAGGCTATCTTCTACTAGTTCAGGCTAACTTGTTTGAATGTGGTGGATTGGCAATTGGGGTCAGCATTTTGCATAAGGTCACCGATGCTTCAACATTCAGCGCATTCATAAAGCACTGGACGGAAATTGCCCTCGGCTTAGCCATTACAAGTGATCATGACGTGCTTCCTGCAGATTTTGGCATTGCAGCTTCTCTATTCGCCCCACAAGATTTCTTCAACTCACCAAAACCTACCATGCACCTTCCTAAAGACAAGTGTATAACACAGAGATACATGTTTGATGCCTCGAGTATTGCTGCTCTTAAGACCAAAGCTGCCGGTGCAGCAGTGCCAAATCCAACGCGTGTTGAAGCAGTGTCGGCCCTCATTTGGAAATGCACAATGGAAGCTTCAAGATCGAATTTGGGTTCTATAAAGCCATCAGTTTTGTGTCAAGTGGCGAACATAAGGAAAGGATTATCAGGGCAGGCAGAAAACCTAATGGGGAATCTTGTGTGGTGCTTCACGGCAATGAACTTACAGGGTGAATTAGACTACAAAAACTTGTTTGTGAAACTCCGAAAAGGCATTGAAGTATATAAAGAAGAACGCCCTAATGGAGTTAGTGGTGATGTGGTAATGCAAACCATCAAAGAGTTTGGCAATCTGGGAAGACATGATGTAGAAACCTATGCTTTTAGCAGTTGGTGCCGGCTTCCCTTCTACAAAGCCAATTTCGGGTGGGGAAAGCCAGCATGGGTGAGCATTCGTAGCATCGAATTCAAGAACATGATTGCATTGATGGACACAAATGATGGTGGTGGCATAGAAGTCACCTTGACTTTAAAAGAAGACGACATGGCCATGATCGGAAGTAATAAGGAGTTCCTTGCATATGCATCCCTGAATTCGGCTGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

415

Amino Acids

45.78

Weight (kDa)

7.97

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 403 4.5e-62 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 15
AccB1I GGYRCC 1 cut(s) 1029
AccII CGCG 1 cut(s) 685
AclWI GGATC 3 cut(s) 286, 318, 331
AcoI YGGCCR 1 cut(s) 1182
AcsI RAATTY 6 cut(s) 46, 227, 267, 742, 1100, 1228
AcyI GRCGYC 1 cut(s) 12
AfiI CCNNNNNNNGG 4 cut(s) 221, 711, 1059, 1231
AflII CTTAAG 1 cut(s) 644
AflIII ACRYGT 2 cut(s) 615, 683
AgsI TTSAA 9 cut(s) 77, 233, 377, 432, 559, 692, 735, 914, 1105
AhlI ACTAGT 1 cut(s) 355
AjiI CACGTC 1 cut(s) 502
AluBI AGCT 6 cut(s) 166, 172, 252, 530, 656, 731
AluI AGCT 6 cut(s) 166, 172, 252, 530, 656, 731
AlwI GGATC 3 cut(s) 286, 318, 331
Ama87I CYCGRG 1 cut(s) 628
AoxI GGCC 2 cut(s) 702, 1182
ApeKI GCWGC 5 cut(s) 252, 527, 638, 656, 665
ApoI RAATTY 6 cut(s) 46, 227, 267, 742, 1100, 1228
AspLEI GCGC 1 cut(s) 443
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 6 cut(s) 412, 555, 878, 962, 1093, 1147
AvaI CYCGRG 1 cut(s) 628
BalI TGGCCA 1 cut(s) 1184
BamHI GGATCC 1 cut(s) 323
BanI GGYRCC 1 cut(s) 1029
BbsI GAAGAC 2 cut(s) 1000, 1179
BbvI GCAGC 5 cut(s) 239, 539, 625, 643, 677
BccI CCATC 4 cut(s) 769, 977, 1117, 1130
BceAI ACGGC 1 cut(s) 864
BclI TGATCA 2 cut(s) 259, 493
BcuI ACTAGT 1 cut(s) 355
BfaI CTAG 1 cut(s) 356
BfmI CTRYAG 2 cut(s) 318, 510
BfrI CTTAAG 1 cut(s) 644
BisI GCNGC 5 cut(s) 253, 528, 639, 657, 666
BlpI GCTNAGC 1 cut(s) 478
BlsI GCNGC 5 cut(s) 254, 529, 640, 658, 667
BmeT110I CYCGRG 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 325, 1031
BmsI GCATC 4 cut(s) 415, 613, 1104, 1229
BpiI GAAGAC 2 cut(s) 1000, 1179
Bpu1102I GCTNAGC 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 152
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 472
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 711, 1059, 1231
Bse118I RCCGGY 2 cut(s) 659, 1032
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 4 cut(s) 145, 262, 522, 858
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 1 cut(s) 1220
BseLI CCNNNNNNNGG 4 cut(s) 221, 711, 1059, 1231
BseMI GCAATG 4 cut(s) 145, 262, 522, 858
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 461
BseXI GCAGC 5 cut(s) 239, 539, 625, 643, 677
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 685
BshFI GGCC 2 cut(s) 704, 1184
BshNI GGYRCC 1 cut(s) 1029
BsiHKCI CYCGRG 1 cut(s) 628
BsiSI CCGG 2 cut(s) 660, 1033
BslFI GGGAC 1 cut(s) 105
BslI CCNNNNNNNGG 4 cut(s) 221, 711, 1059, 1231
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 2 cut(s) 443, 1086
BsnI GGCC 2 cut(s) 704, 1184
BsoBI CYCGRG 1 cut(s) 628
Bsp143I GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
Bsp1720I GCTNAGC 1 cut(s) 478
BspANI GGCC 2 cut(s) 704, 1184
BspCNI CTCAG 1 cut(s) 54
BspFNI CGCG 1 cut(s) 685
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 325, 1031
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 3 cut(s) 286, 318, 331
BspT107I GGYRCC 1 cut(s) 1029
BspTI CTTAAG 1 cut(s) 644
BsrDI GCAATG 4 cut(s) 145, 262, 522, 858
BsrFI RCCGGY 2 cut(s) 659, 1032
BsrI ACTGG 1 cut(s) 461
BssAI RCCGGY 2 cut(s) 659, 1032
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
BssNI GRCGYC 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 644
BstAPI GCANNNNNTGC 1 cut(s) 1029
BstC8I GCNNGC 4 cut(s) 343, 810, 1034, 1074
BstDEI CTNAG 2 cut(s) 41, 478
BstEII GGTNACC 1 cut(s) 418
BstF5I GGATG 1 cut(s) 1220
BstFNI CGCG 1 cut(s) 685
BstHHI GCGC 1 cut(s) 443
BstKTI GATC 7 cut(s) 249, 262, 294, 326, 496, 740, 1191
BstMBI GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
BstMWI GCNNNNNNNGC 5 cut(s) 662, 665, 701, 1029, 1092
BstNSI RCATGY 1 cut(s) 619
BstPI GGTNACC 1 cut(s) 418
BstSFI CTRYAG 2 cut(s) 318, 510
BstUI CGCG 1 cut(s) 685
BstV1I GCAGC 5 cut(s) 239, 539, 625, 643, 677
BstV2I GAAGAC 2 cut(s) 1000, 1179
BstX2I RGATCY 1 cut(s) 323
BstYI RGATCY 1 cut(s) 323
BsuRI GGCC 2 cut(s) 704, 1184
BtrI CACGTC 1 cut(s) 502
BtsCI GGATG 1 cut(s) 1220
BtsI GCAGTG 2 cut(s) 675, 702
BtsIMutI CAGTG 3 cut(s) 454, 675, 702
Cac8I GCNNGC 4 cut(s) 343, 810, 1034, 1074
CciI TCATGA 1 cut(s) 496
CfoI GCGC 1 cut(s) 443
Cfr10I RCCGGY 2 cut(s) 659, 1032
Cfr13I GGNCC 1 cut(s) 703
CviAII CATG 9 cut(s) 263, 497, 577, 616, 998, 1077, 1111, 1180, 1186
DdeI CTNAG 2 cut(s) 41, 478
DpnI GATC 7 cut(s) 248, 261, 293, 325, 495, 739, 1190
DpnII GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
DraI TTTAAA 1 cut(s) 1167
EaeI YGGCCR 1 cut(s) 1182
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco88I CYCGRG 1 cut(s) 628
Eco91I GGTNACC 1 cut(s) 418
EcoO65I GGTNACC 1 cut(s) 418
EcoRI GAATTC 2 cut(s) 1100, 1228
EcoT22I ATGCAT 1 cut(s) 1222
FaeI CATG 9 cut(s) 266, 500, 580, 619, 1001, 1080, 1114, 1183, 1189
FaqI GGGAC 1 cut(s) 105
FatI CATG 9 cut(s) 262, 496, 576, 615, 997, 1076, 1110, 1179, 1185
FauNDI CATATG 1 cut(s) 1216
FbaI TGATCA 2 cut(s) 259, 493
Fnu4HI GCNGC 5 cut(s) 253, 528, 639, 657, 666
FokI GGATG 1 cut(s) 1207
Fsp4HI GCNGC 5 cut(s) 253, 528, 639, 657, 666
FspBI CTAG 1 cut(s) 356
GlaI GCGC 1 cut(s) 442
GluI GCNGC 5 cut(s) 253, 528, 639, 657, 666
HaeIII GGCC 2 cut(s) 704, 1184
HapII CCGG 2 cut(s) 660, 1033
HhaI GCGC 1 cut(s) 443
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 9 cut(s) 266, 500, 580, 619, 1001, 1080, 1114, 1183, 1189
Hin6I GCGC 1 cut(s) 441
HinP1I GCGC 1 cut(s) 441
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 2 cut(s) 170, 729
HinfI GANTC 1 cut(s) 829
HpaII CCGG 2 cut(s) 660, 1033
HphI GGTGA 6 cut(s) 412, 555, 878, 962, 1093, 1147
Hpy166II GTNNAC 2 cut(s) 10, 19
Hpy188I TCNGA 4 cut(s) 44, 337, 902, 1193
Hpy188III TCNNGA 4 cut(s) 122, 497, 735, 1105
Hpy8I GTNNAC 2 cut(s) 10, 19
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 593, 1051
HpyCH4IV ACGT 2 cut(s) 12, 501
HpyF10VI GCNNNNNNNGC 5 cut(s) 662, 665, 701, 1029, 1092
HpyF3I CTNAG 2 cut(s) 41, 478
HpySE526I ACGT 2 cut(s) 12, 501
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 9 cut(s) 266, 500, 580, 619, 1001, 1080, 1114, 1183, 1189
HspAI GCGC 1 cut(s) 441
KroI GCCGGC 1 cut(s) 1032
KroNI GCCGGC 1 cut(s) 1034
Ksp22I TGATCA 2 cut(s) 259, 493
Kzo9I GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
Lsp1109I GCAGC 5 cut(s) 239, 539, 625, 643, 677
LweI GCATC 4 cut(s) 415, 613, 1104, 1229
MaeI CTAG 1 cut(s) 356
MaeII ACGT 2 cut(s) 12, 501
MaeIII GTNAC 2 cut(s) 418, 1153
MalI GATC 7 cut(s) 248, 261, 293, 325, 495, 739, 1190
MboI GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
MboII GAAGA 6 cut(s) 97, 341, 547, 938, 1005, 1184
MfeI CAATTG 3 cut(s) 139, 302, 393
MflI RGATCY 1 cut(s) 323
MlsI TGGCCA 1 cut(s) 1184
MluI ACGCGT 1 cut(s) 683
MluNI TGGCCA 1 cut(s) 1184
MmeI TCCRAC 3 cut(s) 50, 335, 704
MnlI CCTC 6 cut(s) 50, 209, 291, 482, 637, 716
Mox20I TGGCCA 1 cut(s) 1184
Mph1103I ATGCAT 1 cut(s) 1222
MroNI GCCGGC 1 cut(s) 1032
MscI TGGCCA 1 cut(s) 1184
MseI TTAA 3 cut(s) 66, 645, 1166
MslI CAYNNNNRTG 2 cut(s) 851, 1184
Msp20I TGGCCA 1 cut(s) 1184
MspA1I CMGCKG 1 cut(s) 252
MspCI CTTAAG 1 cut(s) 644
MspI CCGG 2 cut(s) 660, 1033
MunI CAATTG 3 cut(s) 139, 302, 393
Mva1269I GAATGC 2 cut(s) 443, 1086
MvnI CGCG 1 cut(s) 685
MwoI GCNNNNNNNGC 5 cut(s) 662, 665, 701, 1029, 1092
NaeI GCCGGC 1 cut(s) 1034
NdeI CATATG 1 cut(s) 1216
NdeII GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
NgoMIV GCCGGC 1 cut(s) 1032
NlaIII CATG 9 cut(s) 266, 500, 580, 619, 1001, 1080, 1114, 1183, 1189
NlaIV GGNNCC 2 cut(s) 325, 1031
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 418, 1153
NsiI ATGCAT 1 cut(s) 1222
NspI RCATGY 1 cut(s) 619
PaeR7I CTCGAG 1 cut(s) 628
PagI TCATGA 1 cut(s) 496
PciI ACATGT 1 cut(s) 615
PctI GAATGC 2 cut(s) 443, 1086
PdiI GCCGGC 1 cut(s) 1034
PfeI GAWTC 1 cut(s) 829
PkrI GCNGC 5 cut(s) 254, 529, 640, 658, 667
PscI ACATGT 1 cut(s) 615
PspEI GGTNACC 1 cut(s) 418
PspN4I GGNNCC 2 cut(s) 325, 1031
PspPI GGNCC 1 cut(s) 703
PspXI VCTCGAGB 1 cut(s) 628
PstI CTGCAG 1 cut(s) 514
PsuI RGATCY 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 252
RseI CAYNNNNRTG 2 cut(s) 851, 1184
SaqAI TTAA 3 cut(s) 66, 645, 1166
SatI GCNGC 5 cut(s) 253, 528, 639, 657, 666
Sau3AI GATC 7 cut(s) 246, 259, 291, 323, 493, 737, 1188
Sau96I GGNCC 1 cut(s) 703
SfaNI GCATC 4 cut(s) 415, 613, 1104, 1229
SfcI CTRYAG 2 cut(s) 318, 510
Sfr274I CTCGAG 1 cut(s) 628
SlaI CTCGAG 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 851, 1184
SmlI CTYRAG 3 cut(s) 167, 628, 644
SmoI CTYRAG 3 cut(s) 167, 628, 644
SpeI ACTAGT 1 cut(s) 355
SspMI CTAG 1 cut(s) 356
TaiI ACGT 2 cut(s) 15, 504
TaqI TCGA 5 cut(s) 245, 290, 629, 740, 1098
TfiI GAWTC 1 cut(s) 829
Tru1I TTAA 3 cut(s) 66, 645, 1166
Tru9I TTAA 3 cut(s) 66, 645, 1166
TscAI CASTG 3 cut(s) 461, 675, 702
TseFI GTSAC 2 cut(s) 418, 1153
TseI GCWGC 5 cut(s) 252, 527, 638, 656, 665
Tsp45I GTSAC 2 cut(s) 418, 1153
TspDTI ATGAA 5 cut(s) 17, 77, 141, 436, 869
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 3 cut(s) 461, 675, 702
Vha464I CTTAAG 1 cut(s) 644
XapI RAATTY 6 cut(s) 46, 227, 267, 742, 1100, 1228
XceI RCATGY 1 cut(s) 619
XhoI CTCGAG 1 cut(s) 628
XspI CTAG 1 cut(s) 356
ZraI GACGTC 1 cut(s) 13
Zsp2I ATGCAT 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.