pycom14g01050

BAHD acyltransferase At5g47980-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000200
Physical Location & Seq
Forward (+)
741310 .. 742242
933 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g01050.2

Sequence Viewer

Length: 876 bp
ATGCGTTCCAAACAAGCACAAGTAGGGCATCTTGTACTAGTCCAGGCCAACGTATTCGAATGTGGTGGATTGGCAATTGGTGTCAGCATTTCGCATAAGGTCGCCGATGGCTTAGCGAACAGCAAATTCATCGAAAGCTGGGCTGAAATTGCCCGCTGCACTGCCAGCACTACTGACCATCACGTAGTACTTCCTACAGAATTTGGTGTCGCAGCTACTTTGTTCCCCCCACAAGAATTTTTTAACTCACCGAAGAGCCCCCTCACGCTACCTTTTATTGACAATGTTATCGGACGGAGGCTAGTGTTTGATGCCTCAAAGATTGCTGCTCTCAAGGCCAAAGCTGCCAGTGCCACAGTGCCAAATCCGACGCGAGTTGAAGCAGTTTCCGCGCTCATCTGGAAATCCGCATTGGAAGCATCAACATCGAACTTGGGTTTTGCAAGGCCATCTACATGGCGGTCCTCTGTGAACCTGAGGAAAATATTGATTGAAGAAAATGAAGTATATGATCTTCAAACCTTGGTTGCAAAAATGAGGAAAAGCGTTGAGGAATTTAAGGTAAAATATGCCAATGAAATTAGAGGGGAGGAAGTAGTTCAATTCCTGAAGGAGTATAGTGAGCTCCTTCAAAAGGATGACATGGACAACTATATTTGCACCAGTTTGTGTAGGTTTCCTTTCGGCTCGGCCAATTTTGGATGGGGAAAGGCATCATGCATACGTATCCCTTGGAATGAAGATTTCAAAAACAGAATGTTATTGTTGGATGCAAGTGATGGCATTGGCATCGATGCATACATAACACTGAAAAAAGAAGATATGGTCATGATTGAAACCAACCAGGACCTGCTTGCATATGCTTCTCTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

292

Amino Acids

32.3

Weight (kDa)

6.25

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000200)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24420 AT1G24420
fragaria_vesca FvH4_3g15900 FvH4_3g15901 FvH4_3g15902 FvH4_3g15903 FvH4_3g15910 FvH4_3g16350 FvH4_3g16950 FvH4_3g17000 FvH4_3g17010 FvH4_3g35170 FvH4_4g17550
malus_domestica MD02G1273000.v1.1 MD03G1110800.v1.1 MD05G1218500.v1.1 MD05G1218600.v1.1 MD05G1218800.v1.1 MD05G1218900.v1.1 MD05G1219000.v1.1 MD09G1267700.v1.1 MD10G1199600.v1.1 MD10G1199700.v1.1 MD10G1200000.v1.1 MD10G1200100.v1.1 MD10G1200300.v1.1 MD10G1201000.v1.1 MD11G1116900.v1.1 MD11G1117000.v1.1 MD11G1275900.v1.1 MD13G1109500.v1.1 MD14G1011700.v1.1 MD14G1015400.v1.1 MD14G1015500.v1.1
prunus_persica Prupe.4G140700_v2.0.a1 Prupe.4G140800_v2.0.a1 Prupe.4G141500_v2.0.a1
pyrus_communis pycom02g23390 pycom05g19930 pycom05g19940 pycom05g19970 pycom05g19980 pycom05g19990 pycom05g20000 pycom05g20020 pycom10g17190 pycom10g17200 pycom10g17210 pycom10g17220 pycom10g24650 pycom11g24430 pycom14g01050 pycom14g01330 pycom16g06450
rosa_chinensis RchiOBHm_Chr4g0391831 RchiOBHm_Chr4g0391841 RchiOBHm_Chr4g0407921 RchiOBHm_Chr4g0408021 RchiOBHm_Chr4g0412981 RchiOBHm_Chr4g0415601 RchiOBHm_Chr4g0415621 RchiOBHm_Chr4g0421461 RchiOBHm_Chr4g0431781 RchiOBHm_Chr5g0026651 RchiOBHm_Chr5g0026721 RchiOBHm_Chr5g0026731 RchiOBHm_Chr5g0026741 RchiOBHm_Chr5g0026751 RchiOBHm_Chr5g0026821 RchiOBHm_Chr5g0028341
rosa_laevigata RLG00000006890 RLG00000007680 RLG00000007682 RLG00000008056 RLG00000008057 RLG00000008058 RLG00000008060 RLG00000008681 RLG00000032943 RLG00000032951 RLG00000032955 RLG00000032956 RLG00000032957 RLG00000032958 RLG00000032961 RLG00000033083 RLG00000033084
rosa_multiflora Rmu_co7991326.1_g000001 Rmu_co8439139.1_g000001 Rmu_co8448401.1_g000001 Rmu_sc0001194.1_g000015 Rmu_sc0001962.1_g000015 Rmu_sc0002073.1_g000012 Rmu_sc0004490.1_g000006 Rmu_sc0004599.1_g000009 Rmu_sc0004805.1_g000044 Rmu_sc0008526.1_g000001 Rmu_ssc0000172.1_g000021 Rmu_ssc0000172.1_g000031 Rmu_ssc0000172.1_g000032
rosa_roxburghii Rroxscaffold_1G00051360 Rroxscaffold_1G00051390 Rroxscaffold_1G00052710 Rroxscaffold_1G00052750 Rroxscaffold_1G00052810 Rroxscaffold_1G00052820 Rroxscaffold_4G00321060 Rroxscaffold_4G00321070 Rroxscaffold_5G00352550 Rroxscaffold_5G00359410
rosa_rugosa Rorug01G0079700 Rorug01G0080700 Rorug04G0083200 Rorug04G0083400 Rorug04G0135400 Rorug04G0135500.1 Rorug04G0135900 Rorug04G0171400 Rorug04G0252300 Rorug05G0095200 Rorug05G0095300 Rorug05G0095400 Rorug05G0402400
rosa_samantha Rh1DG103500 Rh4AG176900 Rh4AG196400 Rh4AG232100 Rh4AG308800 Rh4DG141600 Rh4DG194000 Rh4DG194100 Rh4DG194300 Rh4DG230600 Rh5AG177800 Rh5AG188100 Rh5AG188800 Rh5AG188900 Rh5AG199400 Rh5DG187300 Rh5DG187400 Rh5DG188000 Rh5DG199900
rosa_wichuraiana Rw0G018630 Rw1G007730 Rw4G012100 Rw4G016700 Rw4G020190 Rw5G016100 Rw5G017090 Rw5G017100 Rw5G017110 Rw5G018170 Rw5G018180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 858
AccII CGCG 2 cut(s) 373, 392
AciI CCGC 4 cut(s) 154, 390, 408, 460
AcoI YGGCCR 1 cut(s) 690
AcsI RAATTY 4 cut(s) 125, 200, 236, 554
AcuI CTGAAG 1 cut(s) 629
AfaI GTAC 2 cut(s) 36, 189
AfiI CCNNNNNNNGG 1 cut(s) 634
AgsI TTSAA 7 cut(s) 380, 494, 518, 602, 632, 748, 836
AhlI ACTAGT 1 cut(s) 37
AjnI CCWGG 2 cut(s) 42, 843
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 4 cut(s) 138, 215, 344, 625
AluI AGCT 4 cut(s) 138, 215, 344, 625
Alw21I GWGCWC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 850
AoxI GGCC 4 cut(s) 45, 336, 446, 690
ApeKI GCWGC 4 cut(s) 156, 212, 326, 344
ApoI RAATTY 4 cut(s) 125, 200, 236, 554
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 1 cut(s) 394
AspS9I GGNCC 2 cut(s) 462, 847
AsuHPI GGTGA 1 cut(s) 240
AsuII TTCGAA 1 cut(s) 57
AvaII GGWCC 2 cut(s) 462, 847
AxyI CCTNAGG 1 cut(s) 476
BanII GRGCYC 2 cut(s) 260, 627
BarI GAAGNNNNNNTAC 2 cut(s) 498, 530
Bbv12I GWGCWC 1 cut(s) 627
BbvI GCAGC 4 cut(s) 143, 224, 313, 331
BccI CCATC 5 cut(s) 101, 186, 457, 696, 773
BcgI CGANNNNNNTGC 6 cut(s) 112, 146, 408, 442, 772, 806
BciT130I CCWGG 2 cut(s) 44, 845
BciVI GTATCC 1 cut(s) 737
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 2 cut(s) 38, 302
BfmI CTRYAG 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 858
BfuI GTATCC 1 cut(s) 737
BisI GCNGC 4 cut(s) 157, 213, 327, 345
BlpI GCTNAGC 1 cut(s) 112
BlsI GCNGC 4 cut(s) 158, 214, 328, 346
BmcAI AGTACT 1 cut(s) 189
Bme1390I CCNGG 2 cut(s) 44, 845
Bme18I GGWCC 2 cut(s) 462, 847
BmgT120I GGNCC 2 cut(s) 462, 847
BmrFI CCNGG 2 cut(s) 44, 845
BmsI GCATC 7 cut(s) 37, 301, 428, 722, 760, 784, 798
Bpu1102I GCTNAGC 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 792
BsaAI YACGTR 2 cut(s) 184, 725
BsaJI CCNNGG 2 cut(s) 522, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 634
Bse1I ACTGG 2 cut(s) 348, 663
Bse21I CCTNAGG 1 cut(s) 476
BseBI CCWGG 2 cut(s) 44, 845
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 2 cut(s) 522, 731
BseGI GGATG 3 cut(s) 643, 707, 775
BseLI CCNNNNNNNGG 1 cut(s) 634
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 2 cut(s) 348, 663
BseXI GCAGC 4 cut(s) 143, 224, 313, 331
BseYI CCCAGC 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 2 cut(s) 373, 392
BshFI GGCC 4 cut(s) 47, 338, 448, 692
BshVI ATCGAT 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 627
BslI CCNNNNNNNGG 1 cut(s) 634
BsnI GGCC 4 cut(s) 47, 338, 448, 692
Bsp119I TTCGAA 1 cut(s) 57
Bsp1286I GDGCHC 2 cut(s) 260, 627
Bsp143I GATC 1 cut(s) 511
Bsp1720I GCTNAGC 1 cut(s) 112
BspACI CCGC 4 cut(s) 154, 390, 408, 460
BspANI GGCC 4 cut(s) 47, 338, 448, 692
BspCNI CTCAG 1 cut(s) 468
BspDI ATCGAT 1 cut(s) 792
BspFNI CGCG 2 cut(s) 373, 392
BspHI TCATGA 1 cut(s) 828
BspMI ACCTGC 1 cut(s) 858
BspQI GCTCTTC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 57
BsrI ACTGG 2 cut(s) 348, 663
BssECI CCNNGG 2 cut(s) 522, 731
BssMI GATC 1 cut(s) 511
BssT1I CCWWGG 2 cut(s) 522, 731
Bst2UI CCWGG 2 cut(s) 44, 845
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 2 cut(s) 184, 725
BstBI TTCGAA 1 cut(s) 57
BstC8I GCNNGC 3 cut(s) 154, 166, 855
BstDEI CTNAG 2 cut(s) 112, 476
BstENI CCTNNNNNAGG 1 cut(s) 632
BstF5I GGATG 3 cut(s) 643, 707, 775
BstFNI CGCG 2 cut(s) 373, 392
BstHHI GCGC 1 cut(s) 394
BstKTI GATC 1 cut(s) 514
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 7 cut(s) 149, 165, 335, 344, 350, 389, 416
BstNI CCWGG 2 cut(s) 44, 845
BstSCI CCNGG 2 cut(s) 42, 843
BstSFI CTRYAG 1 cut(s) 195
BstSNI TACGTA 1 cut(s) 725
BstUI CGCG 2 cut(s) 373, 392
BstV1I GCAGC 4 cut(s) 143, 224, 313, 331
BstXI CCANNNNNNTGG 1 cut(s) 456
Bsu15I ATCGAT 1 cut(s) 792
Bsu36I CCTNAGG 1 cut(s) 476
BsuI GTATCC 1 cut(s) 737
BsuRI GGCC 4 cut(s) 47, 338, 448, 692
BsuTUI ATCGAT 1 cut(s) 792
BtsCI GGATG 3 cut(s) 643, 707, 775
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 4 cut(s) 159, 355, 363, 806
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 3 cut(s) 154, 166, 855
CaiI CAGNNNCTG 1 cut(s) 850
CciI TCATGA 1 cut(s) 828
CfoI GCGC 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 462, 847
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 1 cut(s) 379
Csp6I GTAC 2 cut(s) 35, 188
CviAII CATG 4 cut(s) 456, 643, 717, 829
CviQI GTAC 2 cut(s) 35, 188
DdeI CTNAG 2 cut(s) 112, 476
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 690
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Ecl136II GAGCTC 1 cut(s) 625
Eco105I TACGTA 1 cut(s) 725
Eco130I CCWWGG 2 cut(s) 522, 731
Eco24I GRGCYC 2 cut(s) 260, 627
Eco47I GGWCC 2 cut(s) 462, 847
Eco53kI GAGCTC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 629
Eco81I CCTNAGG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 625
EcoNI CCTNNNNNAGG 1 cut(s) 632
EcoO109I RGGNCCY 1 cut(s) 847
EcoRII CCWGG 2 cut(s) 42, 843
EcoT14I CCWWGG 2 cut(s) 522, 731
EcoT22I ATGCAT 2 cut(s) 722, 799
EcoT38I GRGCYC 2 cut(s) 260, 627
ErhI CCWWGG 2 cut(s) 522, 731
FaeI CATG 4 cut(s) 459, 646, 720, 832
FatI CATG 4 cut(s) 455, 642, 716, 828
FauI CCCGC 1 cut(s) 161
FauNDI CATATG 1 cut(s) 859
Fnu4HI GCNGC 4 cut(s) 157, 213, 327, 345
FokI GGATG 3 cut(s) 650, 714, 782
FriOI GRGCYC 2 cut(s) 260, 627
Fsp4HI GCNGC 4 cut(s) 157, 213, 327, 345
FspBI CTAG 2 cut(s) 38, 302
GlaI GCGC 1 cut(s) 393
GluI GCNGC 4 cut(s) 157, 213, 327, 345
GsaI CCCAGC 1 cut(s) 142
HaeIII GGCC 4 cut(s) 47, 338, 448, 692
HgaI GACGC 1 cut(s) 379
HhaI GCGC 1 cut(s) 394
Hin1II CATG 4 cut(s) 459, 646, 720, 832
Hin6I GCGC 1 cut(s) 392
HinP1I GCGC 1 cut(s) 392
HphI GGTGA 1 cut(s) 240
Hpy166II GTNNAC 1 cut(s) 472
Hpy188I TCNGA 2 cut(s) 293, 369
Hpy188III TCNNGA 3 cut(s) 400, 607, 829
Hpy8I GTNNAC 1 cut(s) 472
Hpy99I CGWCG 1 cut(s) 373
HpyAV CCTTC 2 cut(s) 604, 638
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 3 cut(s) 51, 183, 724
HpyCH4V TGCA 9 cut(s) 159, 443, 530, 660, 720, 773, 797, 857, 871
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 165, 335, 344, 350, 389, 416
HpyF3I CTNAG 2 cut(s) 112, 476
HpySE526I ACGT 3 cut(s) 51, 183, 724
Hsp92II CATG 4 cut(s) 459, 646, 720, 832
HspAI GCGC 1 cut(s) 392
Kzo9I GATC 1 cut(s) 511
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 630
Lsp1109I GCAGC 4 cut(s) 143, 224, 313, 331
LweI GCATC 7 cut(s) 37, 301, 428, 722, 760, 784, 798
MaeI CTAG 2 cut(s) 38, 302
MaeII ACGT 3 cut(s) 51, 183, 724
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 5 cut(s) 265, 506, 506, 752, 830
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 260, 627
MluCI AATT 9 cut(s) 75, 125, 147, 200, 236, 554, 579, 602, 694
MmeI TCCRAC 2 cut(s) 392, 747
MnlI CCTC 9 cut(s) 272, 291, 325, 471, 475, 531, 544, 578, 583
Mph1103I ATGCAT 2 cut(s) 722, 799
MroXI GAANNNNTTC 1 cut(s) 597
MseI TTAA 2 cut(s) 243, 558
MslI CAYNNNNRTG 1 cut(s) 454
MspA1I CMGCKG 1 cut(s) 156
MspR9I CCNGG 2 cut(s) 44, 845
MunI CAATTG 1 cut(s) 75
MvaI CCWGG 2 cut(s) 44, 845
MvnI CGCG 2 cut(s) 373, 392
MwoI GCNNNNNNNGC 7 cut(s) 149, 165, 335, 344, 350, 389, 416
NdeI CATATG 1 cut(s) 859
NdeII GATC 1 cut(s) 511
NlaIII CATG 4 cut(s) 459, 646, 720, 832
NmeAIII GCCGAG 1 cut(s) 668
NsiI ATGCAT 2 cut(s) 722, 799
NspV TTCGAA 1 cut(s) 57
PagI TCATGA 1 cut(s) 828
PciSI GCTCTTC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 597
PkrI GCNGC 4 cut(s) 158, 214, 328, 346
Ppu21I YACGTR 2 cut(s) 184, 725
PpuMI RGGWCCY 1 cut(s) 847
Psp124BI GAGCTC 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 847
Psp6I CCWGG 2 cut(s) 42, 843
PspFI CCCAGC 1 cut(s) 138
PspGI CCWGG 2 cut(s) 42, 843
PspPI GGNCC 2 cut(s) 462, 847
PspPPI RGGWCCY 1 cut(s) 847
PstNI CAGNNNCTG 1 cut(s) 850
RsaI GTAC 2 cut(s) 36, 189
RsaNI GTAC 2 cut(s) 35, 188
RseI CAYNNNNRTG 1 cut(s) 454
SacI GAGCTC 1 cut(s) 627
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 243, 558
SatI GCNGC 4 cut(s) 157, 213, 327, 345
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 2 cut(s) 462, 847
ScaI AGTACT 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 44, 845
SduI GDGCHC 2 cut(s) 260, 627
SfaNI GCATC 7 cut(s) 37, 301, 428, 722, 760, 784, 798
SfcI CTRYAG 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 57
SinI GGWCC 2 cut(s) 462, 847
SmiMI CAYNNNNRTG 1 cut(s) 454
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SnaBI TACGTA 1 cut(s) 725
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 9 cut(s) 75, 125, 147, 200, 236, 554, 579, 602, 694
SsiI CCGC 4 cut(s) 154, 390, 408, 460
SspI AATATT 1 cut(s) 486
SspMI CTAG 2 cut(s) 38, 302
SstI GAGCTC 1 cut(s) 627
StyD4I CCNGG 2 cut(s) 42, 843
StyI CCWWGG 2 cut(s) 522, 731
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 3 cut(s) 54, 186, 727
TaqI TCGA 4 cut(s) 57, 132, 428, 792
TasI AATT 9 cut(s) 75, 125, 147, 200, 236, 554, 579, 602, 694
TatI WGTACW 2 cut(s) 34, 187
Tru1I TTAA 2 cut(s) 243, 558
Tru9I TTAA 2 cut(s) 243, 558
TscAI CASTG 4 cut(s) 166, 355, 363, 813
TseI GCWGC 4 cut(s) 156, 212, 326, 344
TspDTI ATGAA 4 cut(s) 118, 516, 591, 753
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 4 cut(s) 166, 355, 363, 813
VpaK11BI GGWCC 2 cut(s) 462, 847
XagI CCTNNNNNAGG 1 cut(s) 632
XapI RAATTY 4 cut(s) 125, 200, 236, 554
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 2 cut(s) 38, 302
ZrmI AGTACT 1 cut(s) 189
Zsp2I ATGCAT 2 cut(s) 722, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.